miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGAAGCTGCCAGCATGATCTT
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73890048|gb|DT492786.1|DT492786 WS02552.C21_F10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02552_F10 3', mRNA sequence 

TGAAGCTGCCAGCATGATCTT
  ||||||||||| ||||||.
TGTTCGACGGTCGGACTAGAG

EST sequence (targeted fragment marked with yellow):
CTAATTACATGAGTATTGCAGGCACCAATTTCTCTCTTAATCCAGCAATGGCACCTTCAAGTTGCATTGATGAATCAGGTTTCCTCCAGTCCATGGAAAATGTGGGCCAAGGAAATCCACCATCTAGAACCTTTGTTAAGGTTTACAAGTCAGGGTCCTTTGGTAGGTCACTGGATATAACCAAATTCAGCAACTACAATGAGTTGCGAAGTGAGCTTGCATTCATGTTTGGCCTTGAAGGCCAACTGGAGGACCCCCTGAGATCAGGCTGGCAGCTTGTATTCATCGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGGCCCCTGGCCGGAATTTGTAAACAGCGTGTGGTGCATCAAAATACTCTCACCGCAAGAAGTACAACAAATGGGCAAACGAGGTTTAGAGCTTCTGAACAGTGTCCCAATTCAGAGGCTTTCCAATGGCAGCTGTGATGACTATGTAAACCGGCAGGATTCACAAAATTTGAGCAATGCTATAACTTCTGTGGGGTCTTTGGACTGCCGAGAAATTTAAGCAGTTAAGATACCACAATCTCTTCTGTAATATTAGCATTCCTTCCAAATCTTTCAGTTTCAGAAGTGAAAGGGGCAAAGCCTAATCTAGCTTAAGTTTTAATGTAAGCTATTGTTGTAATGTGATTAGAAGATACTGCTCCTAGTTTCTAAAGCTATTATTGTAACTAGAAGATAATGTTCCTCGTTTCTAAGCTATTATTGTAACTAGAAGATAATGTTCCTCGTTAGTAAGCTATTGAAATTTGAATGCCAACAGTTGCTTATAAGGGACCAAAAAAAAAAAAAAAAAA


gi|73886226|gb|DT488964.1|DT488964 WS02537.B21_O21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_O21 3', mRNA sequence 

TGAAGCTGCCAGCATGATCTT
  ||||||||||| ||||||.
TGTTCGACGGTCGGACTAGAG

EST sequence (targeted fragment marked with yellow):
TCAGACATGACAGCTTCAAGTTGTGTAGATGAATCAGGTTTCTTACAGTCCTCTGAAAATGTGGATCAGTAAAACCATCAACAAGAACCTTTGTGAAGGTTCACAAGTCAGGGTCCTACGGGCGATCACTAGATATTTCCAAGTTCAGCAGCTATGATGAGCTTCGCAGTGAGCTTGCTCGCTTGTTTTGCCTAGAAGGCCTATTAGAGGACCCACAGAGATCAGGCTGGCAGCTTGTATTTGGTGACCGGGAGAACGATGTGCTTCTCCTTGGTGATGATCCTTGGCAGGAATTTGTGAACAATGTCTGGTATATCAAGATCCTATCTCCTCTTGAAGTGCAACAAATGGGCAAAGAAGGTCTCAGTCCTGCAGCTTCTGTCCCAAGCCAAAAGCTTTCTAATAGCAACAGCGATGGGCACATGAATACGCAGGGTTTTAGAAACTCAAGCAATGGGATTGCATCTATGGGGTCTCTTGACTACTAAGGCAGATGCACATAAAAAACCTGAAATCACATGACAATTAACTGAAAAGCAAGTAACTATATTATGGTACCTGTTATATCCACCGAACGTTAATGTTACTTGAACCTTTTTCTGGTGGGTAAAGTGTCGTGCATGGTCAGGTTATCTAGCATGTTACTGTAAATTGTAATTTACTATAGGAGACTGTTTCTCTTATCACTATACTAGTAACGTCATGGAAGTGTTAGGAGAATGCAGCATGGTAGTGGTTTGTTTGTTACCAGATAAAGTTTTGAGAAAGTAAATCTCTATTCTCTTATTATTATCTGAGGCCAGAGAGTAAACTATATATATATACAACCAGTCACAACCAGTCTGTAATGACAGTTGGTATAACTGTAAAGCAGTTAGAGCTAGACAGTTATAACAATATAACAGAATCCAAAAAATATCGAGGTGGGTAATTTCAC


gi|73879405|gb|DT482143.1|DT482143 WS02519.B21_A07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_A07 3', mRNA sequence 

TGAAGCTGCCAGCATGATCTT
  ||||||||||| ||||||.
TGTTCGACGGTCGGACTAGAG

EST sequence (targeted fragment marked with yellow):
GGATCACTAGATATTTCCAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAGCTTGCTCGTTTGTTTTGCCTAGAAGGCCAATTAGAGGACCGACAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTGCTTCTCCTTGGTGATGATCCTTGGCAGGAATTTGTGAACAATGTCTGGTATATCAAGATCCTATCTCCCCTTGAAGTGCAACAAATGGGTAAAGAAGGTCTCACTTCTGCAGCTTCTGTGCCAAGCCAAAAGCTTTCTAATAGCACCAGCGACGGCTACATGAATAGACAGGAGTTTAGAAACTCAAGCAATCCCGATGGCTACTTGAATAGACAGGATTTTAGAAACTCGAGCAATGGGATTGCATCCATGGGGTCTCTTGACTACCAAGGCAGATGCTCGTAAAACCAGAAATCAAATGAAAATTAATTGTGATGTGAGTAACTATTTTATGGTGACTGTTATACATCCACTGAGCAGTAATGCTCTTACTTTTTTCCGGTGGGTAAAGTGTCGTGCATGGTCAAGTTTATCCTGCATATTACTGTAAATTGTAATTTAATATAGGAGACCTTCTCTTATCACTATACTATGAACGTCATGAAAGCGTTAGGAGAATGGCAGCATAGTGGTTTGTTTGTTACCCTTCCCGTGACTTGTGAGATGATCCTGATAAATAAAATAAAAAAAAAAAAAAAAA


gi|73886391|gb|DT489129.1|DT489129 WS02538.B21_F24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_F24 3', mRNA sequence 

TGAAGCTGCCAGCATGATCTT
||||.||||||| ||  ||||
ACTTTGACGGTCCTAAAAGAA

EST sequence (targeted fragment marked with yellow):
GGCTGTGTTAGATGTGATGAGCTAGCAAGCTGGGAGGCAGTACCTGAAGGGGTGAGACTAGAAGGACAAACAGATTTTTGCTGGCTTTGTGAACAGCCAAAGAAATTGCTAGTTCCTTTTGAGATGCGAGGCTATCAGCGTGTTTATAACTTGGAAAAGAAGATATATGAGGCTGCTGTTAGAGGTCTTGTCAGTGTTGAAGGTCCAATGCCAGTAAAATTTCCCCTTCCAGATCCTCAAGATCCCTTTTCCTTAAAACCAGGCTCTATTTCTGAAGAGTTCTCTGAAAATGAAGCATCCGGAGTGGAGAAGTCAGAGAGTCTCAGTGCAGCAATTGCTGGTGCACGAGCAGCAGCTACACAGTTCAACAAGAAAGATTAAAACCTTCTAACTATTACCATGAAAAATTGCTATTGCAACTCCACAAGCATGGTCAACCTGACAGCAAATCATTGGAAGAAGATAAAATGCCACAGAGCTACTCATGTGGACGTTCTGATGAGGAATCCTAAGTTCTGAGCCACACAGAGCAACACAATCCCATTCAGTACTACGAAAGCAGTAGTCGCAGTCAAACCTGTGAAGATTTGAAATAGATCCCTGGAGCTTCAACTAAGGGTTTTTGTTGTCTTATCAGTGGTGATATTTTTTTAATTCTGTTCTGTTGTTGCCTGCTTTAGTAATTTTCCAGATTCAATCATGTATGAGAGGGATATGCCTTGGCAAGTTCATGCTCTTAATGCAATTTAATATAGTAAGAAAATCCTGGCAGTTTCAAGTCCAAAAAAAAAAAAAAAAAA