| mature miRNA: TGAAGTGTTTGGGGGAACTC species: Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211869804|gb|CO483199.2|CO483199 GQ0198.B3_H24 GQ019: Clean ROOTS systems - P treatments Picea glauca cDNA clone GQ0198_H24 5 TGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GCACCAGGAGACAATCCTTGAGTTCACTACTTCGGGCAGGTCTGACTCCAGACAAAAGCCTCTTAGAGATTCTTCCCATACGACCATAAGATTTGGCGAATCTTTGCAGATGCAGTTCAGCCCTTGCTCGAATTCGAGATTTGGTCGTTCCGTGATGGCGTTAGCTGAAAACAGTGGTAAGCTCACCCTATGCCTGCGCCGTTTATGGCGCATTTCCGGCTGGAATCCGGCCATCGATTGGCATTTTACGCCAGAAATGCGATCTTCTCGGAATATTTGACTGCGTTGCGGTTTTAGCGTCCCCGAATCGATCTCTAAGCTCGCCAGGGTGCGTTTGTTGCTCGACAGATCGGGACGCGGCGGATTTGCTTTGTCCGTTCATGAGAGAGTGCAGTTTGCATTCGACAACGCCGTTCTGTGACGACAAGAGTTCCCCAGACACTTCAGCGATTCCATTCCTTTCGGTGTAATAAAGTATAAACACTCCATGATTTATTCCTTCGAAGGTTTGAATATCTATATTTGTTGGCATTAGGGTTTGAATATCTAAAAAA | |||||||||
gi|211865024|gb|CO483421.2|CO483421 GQ0203.B3_J08 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ0203_J08 5 TGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): CAAGCCGCCGTCTCGTCGGTCCCATGCAAACCCCCTCAAATTTAAAGCTCGCCGAATCCGCTCATATACCCAAGTGCCATTTCAATGTTTGGCTCATATCCCTCAGCCTGAAATTTCTGGATTGTCCAAGTTGCCTATTGCCACGCCCATTCCGAGGAACAATAATTTCATTTGGCACTGCTGACGTGAAGATCTCCGCACAGAAATTCAACGACGGGACACCGACCTGAAGATTTGTGAAGAGATTTAAGAGAAAATTTGAGGGGGTGCGTGTTTATTTCTGCCCAAATTGAAGGCGAATTAGAGGCATTCATTATCTTAAGTACATTTCTTTTGTGAATTACGCTCATTTAGTATAAATGGCATTAGCAGGTGCCGTTGTTGCTAAAGCACCCGCTAAGGGTTGGCCATTTGTTTCTGGGTTTAGGTTGAACGAGCCCATCCAAAACTCCTTGCCGAAAAATTCTGTGCTTTTTAGTTCCAAGAGCAATTTATTTCCAACCCCAATGTCGTCTTCTTCTTCTTCATTTTCCGGTATTGTAACGAGAAAGGGCTTCAGTGTTAGGTCTTCTCTGATTGAGCCAGATGGAGGGAGGCTGGTGGATCTGGTGGTCCCAGAAAGCGATAGGGCTTCAAAGAGGGACGAAGCTGCTTCTTTTCCCCAGATTCCGATAAGTAAGATTGATTTAGAATGGGTTCATGTTCTGAGCGAAGGATGGGCTAATCCTCTCAGCGGCTTCATGAGACAGGCCGAGTTCCTTCAAGCACTTCATTTNCATTTCCTCAGGTTGGAGGATGATTCCATTGTCAATATGTCCATTCCTATTGTCTTGGCCATTGATGATTTGCAGAAGGAGGCCATTGGTAATTCCAAGGATGTTTCTCTTTTGGGTCCAAGTGGCAATCTTGTGG | |||||||||
gi|211889965|gb|DV979449.2|DV979449 GQ0177.B7_P08 GQ017: Immature somatic EMBRYOS Picea glauca cDNA clone GQ0177_P08 3', mRNA se TGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GCTCGCTCTCGCAGACGAGCTCAAAGATGATCCATTGATTGTGTCTATTTTGGATGGGAGTGTCATAAGGCTTTTCCTAGAGGATGAAGATGATTTTGCTATGTTGGCAGAAAATCTGTTCACAGATCTTGATACAGATGATAGTGGCAAGCTTAGCAGAAATGAGTTGCGGTCTGCCCTTGTACAAATGGGAGTCGAGATGGGTGTTCCTCCCTTCTCAGTTACCCCTGAAGGTGATGCTCTGCTGACAAACATTTTAAAGAAGCATGCGGCAGAAGGGACTGAAGAATTAGGGCAGGCTCAGTTTGCTCAAATACTTCAGGGTATCTTGCAAGATCTGGCTGATTCTCTGGCTTTGAAGCCCATTGTTATTATCCAAGATATTAAGGTCATCAATGGCTCACAACTGAGAAAGTTTCTGGCAGATGACAAACTTTTAGAGCAGGTGACAAATCTTATGTTCCGGGAGTTGGATGTGAATAAAAATGGTAAAGTGAGCAAAACAGAACTGCGGCCCTTCTTCGAGATAAAGGGTTCAGAATGGGGTTTGCCTCCTTTAGAAGCCAATGAAACAGTTGGGTTGCTCTACGATCAGATCTTTGCAAGTGTCGATGAGGACCATAGTGGCCAGCTTGAACAGAATGAGTTTCAGTCACTTGTTAAGGGTATACTCGAGACGTTCGCTGAGCAACTTGCTGCAAATCCCATATTTCATGATCTGGAAGCTGCTGATTAGAAATGTTCTTTGATAATGTACTTGTCTTGTTTTGGGATTCTTTTTTCAATGATGAGTCCTGTGTTAAGATTATTTATAGTTGTCTTTACATTAGATTCAACTTAGATGCCATCCGTGGAAAATTAGAAAAAA | |||||||||
gi|225916645|gb|GO371985.1|GO371985 GQ04110.B7P1_L22 GQ041 - Shoot tip - Dormant (Normalized) Picea glauca cDNA clone GQ04110_L2 TGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GAAATCTGTTCCAGATCTTGATACAGATGATAGTGGCAAGCTTAGCAGAAATGAGTTGCGGTCTGCCCTTGTTCAAATGGGAGTCGAGATGGGTGTTCCTCCCTTCTCAGTTACCCCTGAAGGTGATGCTCTGCTGACAAACATTTTAAAGAAGCATGCGACAGAAGGGACTGAAGAATTAGGGCAGGCTCAGTTTGCTCAAATACTTCAGGGTATCTTGCAAGATTTGGCTGATTCTCTGGCTTTGAAGCCCATTGTTATTATCCAAGATATTAAGGTCATCAATGGCTCACAACTGAGAAAGTTTCTGGCAGATGACAAACTTGTAGAGCAGGTGACAAATCTTATGTTCCGGGAGTTGGATGTGAATAAAGATGGTAAAGTGAGCAAAACAGAACTGCGGCCCTTCTTCGAGATAAAGGGTTCAGAATGGGGTCTGCCTCCTTTAGAAGCCAATGAAACAGTTGGGTTGCTCTACGATCAGATCTTTGCAAGTGTCGATGAGGACCATAGTGGCCAGCTTGAACAGAATGAGTTTCAGTCACTTGTTAAGGGTATACTTGAGACGTTCGCTGAGCAACTTGCTGCAAATCCCATATTTCATGATCTGGAAGCTGCTGATTAGAAATGTTCTTTGATAATGTACTTGTCTTGTTTTGGGATTCTTTTTTCAATGATGAGTCCTGTGTTAAGATTATTTATAGTTATCTTTACATTTGATTCAACTTAGATGCCATCCGTGGAAAATTTAGAATTGAACATGTCAACATCACCATACTTGGTCATACCATGAGTAAAATTATTAGAAACATTGTTATATCAGTCACCTTGAATGTTTTGGAAGTTAAAGCCTTTCATCACATAATTTATTTGAAATTAATACTTAGACAAAATGATT | |||||||||
gi|211865614|gb|CO484500.2|CO484500 GQ0203.TB.1_G01 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ0203_G01 TGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): AGACGCAGACAAGTAACAAGCTATCGGATTCAGTCAGAGCAGCTACAGCAGTAGAGCACAGGAAGAGTCGACTCACTTGTTCCGCAGCTACCGGAGGCCGCATCCAGTGTGCTCGCGAACCGTGGAACCGCCAGACCGTGTGTGTTTGCGCTCGTCGTTCGTCCTGCTTACGTCCGTCGCAGTGTGCGTACAAGACAACATCAGACAAATAAGCCAACATTAGTCAGAACTAGACCCCCCAACAGCGGCGCAAGGACACTCCAGATTCACGCAGCGCAGCTGCCACTACGCACCCGCAACCCTTCGTCTTCGCTGCCTGTCGTTTCGGATTCGGTTTTGCAGATTCCCCGCTGGAGTAATTACCTCTTTCCACACTCCACATTCGCGTACACCGAGAGTTAGTCACCGTAGCAAGCAGCGAGCGGCCTCGCCGTAATCCCCCTGTTTCCTTCCTGCCTTCCCTTCCCACTTCAGGCAATGAGCAAGAGCAGATCGACGAAGGTGTTCCTCCAAACTCTTCGTAGGCAGCCAGCATAGCGGTGTGACTGCGAGAAGAAATAGAAGCAGTGCAAGCGTGCAGAGGTTTGGCGACCATCACCAGGGAACGGTATGTGTGCATGCGTGCCTTCTTTCGATTGTGAGCTGTTTGTGCTCTCTCGAAGGAATCCCTTCCCTTCGTTTCTATCGCGAGTGTTCCAAACCAGGAGATCAAAGGACTCGGCGCTAGCACTTCAACACAGCAGACGTCAAGAATGTGGATTCATGCAGAAAGCGTTCGTCGCTCCAGTCCTCGTGGGCCAAGATTGAGCAAGACCCCCCAAAAGAGAA | |||||||||
gi|238892213|gb|GR223626.1|GR223626 GQ0206.T3.r_M13 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ0206_M13 TGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GTCTTTTCGTCATTGGGTTCTGTTTACTTCCTGCAATGTTAAAGTCAGAATGTTTCGGCTTCCACTCTCTCCCAGATTTCAGTTCCCCCAAACGCTTCGATTCGTCCAAACAGGTGCCTGGAGCCGAGCCGGATCTCTCTGAGAAGCAAGACGAAGCGTTAAACAACATGCGAACTGGCTCCAAGAGGAGGAAAACGGTACAGACGCGGGTGATAAGCGTTCCGGCCGGGGAAGCAACCTCAGGTCCGCCTGCAGATTCGTGGGCATGGCGGAAATACGGACAGAAGCCCATCAAGGGATCGCCTTATCCCAGGAGTTACTATCGGTGCAGCAGCTCCAAGGGCTGCACTGCCCGAAAGCAAGTAGAGCGCAGCCGGACTGAACCGTCCATGCTGATGATCACGTACACATCTGAGCACAATCATCCTCCTGCAGTCAATAATAAGAAACTGACTGAAGCTCCATCCCATTGCACTAATATTTCTCGGTCTGATCCACATACGGATACGGATATGAATCCAGCGATAATGGAGTCTCCAGTTATGAGCTTGCTAGGGGAAGCAGTAGGTGGAGAACCAGCTGATTCGTGCATTTCGAGGTCAGAGATTGAAGAAGACGAGGAGGATCTGTTTGCTGGTCTGGGAGAATTGCCAGAGTCGTCTGTCTTTTTTTTCAGTAGAGGCTTCTTTGATGAGAGTTAAGAGGGAGAGGCCGAGTCAGAGAAGAGCTCATCTTCTCGTCCAGTCATATCGCTTGGGTCAGAGTACAGTATTTGGTTTTTGGCTACAGACTTTAATCATAGATGTACAATTACCTG | |||||||||