miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGAATCTTGATGATGCTCCAC
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|46838444|gb|CN520075.1|CN520075 GQ0108.B3_B14 GQ010 Populus trichocarpa x Populus deltoides cDNA clone GQ0108_B14 5', mRNA se 

TGAATCTTGATGATGCTCCAC
 |||||.|||||||||| ||
CCTTAGGACTACTACGACGTC

EST sequence (targeted fragment marked with yellow):
AGTGTGGAAGATGGGAAGCTCGAATGGGCCAGTTCTTAGGCAAAAAGTATGTTTATTTGGGCTTGTTTGATACTGAGATTGAAGCTGCAAGGGCCTATGACAAAGCTGCAATCAAGTGCAATGGCAAGGAGGCAGTAACCAACTTTGATCCCAGCATTTATGAAAATGAGCTTAGCTCAAATGGCAATGCTGCGGATCATAATCTTGATTTGAGCTTGGGCAATCCAGCTTCGAAGCAAAACAGTATAGAATTTGGTCAGGATAGGCACAATGTTGCAATGGAGCAACATTCAGCAACCATGCCATTTGAACCTAATCGGCAAAATCGGGGGCATAGACCCAAGCAGCTTAACCTTTGTACAAGTGACAATGATGGACATGGAAGAGATGGGTATGGAGAGACTGAAACGACTCAGCTTCTTAGCAAAATCCACATTCAATCTCCAGCATCACTCAAGTCCAGTGAAATGCCAAGATATGAGCAGTTCAGGAGATCACTCGGAGATAATCAGATGCATCCTTTTCTTCCCCCACAGTATAACTCACCAAATTATCAAATTCAGCATCCAAGCAGCAGCAATGGAGGCCGAATTGGAAGTGATCTTTCTCTCTCTCCATCTGAGCTTCATTATAACCATCATTATCAGCAATGGCAAGCAGGTCCTCCCCGGTTTGCAAATGCTGCAGCATCATCAGGATTCCNNNAGCAGNTTANNACTCCNNNNNACTNNNNGCANNNNNNNGGGNNCANNNNTCTCATG


gi|52531832|gb|CV278857.1|CV278857 WS0147.B21_K09 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides cDNA clone WS0147_K09 3', 

TGAATCTTGATGATGCTCCAC
|||||||||||||||||||||
ACTTAGAACTACTACGAGGTG

EST sequence (targeted fragment marked with yellow):
TCAACCAAGCTTGCACTCTTCCTCTCATTCTAGTTTTTTTTTTTAAATAATATTCTTATAAAGGTTTGATGAGCTGATGTAGCTAAAAGAAGTGAAAAAACCAAATGGGTTCTCTTTCTTTTTATGTGATCTTCGCCGGAATCTGACATGAGGTGGTACTTGCTATATGTTAGTCTCACCACACACAACCAGAGGGAGTGTGTTTTTGTCAGAATCTCGCCGGATAAATAAATCTGATCCACTTAACTAAAAATCTTTGATTTACCAAAGTACTGAAACTCGTTAGTTCTTGATTCCATTTATTAGATTTTTTTTTCTTTCTTTCTTCTCATCTGATATAAAAAAATATTATTATATTTTTAATGTTGAAAACGGGTTTTGTCTTGTTATAAAGTTCTGAGTTAAACAAGGTTGTAGGATTCTTTCTCGGGCATCCCCTTCACGTATTCCCTTTTGGCCTTAACCAATGGCAACATGCCACATCAGCTCCTTGCTCGTGGGTTTGTTGGTTTGCATATAGAGGAGGTAAAAAGATGGGGCATGGAATTGAAGGCTAAAGGGGTTCTTGTGCATGGAAATATTGACAATCGTTGTTTGCGGGTGGAGCATCATCAAGATTCACATGCAAATGCACGGCCGGTGATGTTAAGAGTTAAATCTTTCTTTGTTTCTGTTCATCTGCCAAAGTTCTTTGGAAGTGAGAATCTTGATGATGCTGCATCGGCAATAAACGACTATACAACACAAAAGGACTTGCAAAAAAAAA