| mature miRNA: TGAATCTTGATGATGCTGCAC species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|37705608|gb|CF756527.1|CF756527 DSAF1_6_C12.b1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_6_C12_A TGAATCTTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): CTCCAGGCTCCTGCGCAGCTCCAAATACCGAGTTACGACGGTGGACAGCGGCAAGAGAGCCTTGGAGGTTCTCAGCCTGGATGACAGCGTGCACATGATCATCACGGATTACTGCATGCCGGAGATGAGCGGGTACGAGCTCCTGAAGCGGGTCAAGGAGTCAGCTGAGCTGCGGGAGATCCCCGTGGTGCTCATGTCGTCGGAGAACTCGCCGACGAGGATCCGGCGGTGCCTGGAGGAGGGTGCCGAGGAGTTCCTCATCAAGCCGGTGAGGGCCTCCGACGTGTCGCGCCTCTGCAGCCGCCTCGTCAGCACCTGCAGGCGCTAGCAGCTTGCTTCTTCGATTCACTTCTTCCTTGAGCTGGATGGAATAGAATTATTGATGGCTCCTAGCTAGCTCGCCAGCAAGCCTACTAATAATATATCCCATCCCATGCATGTATACTGACCGACCAATGCAACAACCAAACAACCAGCAGATGCAGATCATCAGGATTCAGGGTTAGTTTATTTAT | |||||||||
gi|9856076|gb|BE601003.1|BE601003 PI1_95_G03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGAATCTTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGATATCTTGGGCTATTCGACAGCGAAGTAGAGGCTGCAAGGGCTTACGATAAGGCCGCAATCAAATGCAATGGTAGAGAGGCCGTGACGAATTTCGAGCCAAGCACATATGATGGGGAGCTGCTGACTGAAGTTAGCACTGAAGTTGCTGAAGTTGATCTGAACTTGAGCATATCTCAACCGGCATCTCAGAGCCCCAAAAGAGATAAGAGCTGCCTAGGCCTGCAGCTCCACCATGGATCATTTGAGGGCTCCGAATCGAAAAAAACAAAGATTGATACTCCCTCTGAGCTGTCGGGCCACCCTCATCGGTTCCCTCTTATGACTGAGCATCCACCGGCCTGGCCTGCTCAATCTCACCCCTTCTTCACAAATCATGAGAGTACATCATCGAGAGACCTTAACAGGAGGCCTGAGGGGGGTGCTCCTAGCTGGGCATGGAAGGTGACAGCAGCTCCTCCTCACACCCTGCCATTGCCGCTGTTCTCTTCGTCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGG | |||||||||
gi|160713056|gb|EH411223.1|EH411223 RTHAIR1_65_H02.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_6 TGAATCTTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): CTTCGTCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGCCACGACAGCTGCCCCATCGGCCTCCCTCCGGTTCGATGCACCGCCATCGTCGTCATCGAGCCATCATCATCGCCGCTGAGAATCAAGAAGCCACACTGTAAATCTGCTGGGAAGCTGGCATTTTTCCCCCCTCTGGGCGTTGCAACTTTTTCGGTTTTGCGCCGGCTGGGGTGGTTTCTTGTAGTGGATCGATTGGATTCTTCATAACTGTATTTGCACACTGTCATACTGCCCAAGTGAAAATGCTCCTCTCTTTACACTACACAGTACACACACTGCTGCTCTTGGAGCTACTGTTGCTGCTAGAGATTGACTAACTTAAGCATCTGAGATACTTTGATTGATCTATATATACATTGTGTAGAGAATATATCATTGCTGAAACTATTGACAGAAGTATATACAGGTTTGTTCCAGGTCACTCACCACTAGCTTGGTAATTTGTAATCTCTGCTACAAGGGTTCTTTTATAGCTACGTCATGTAATTCTCTTAATCTTAATGAAACA | |||||||||
gi|160712604|gb|EH411646.1|EH411646 RTHAIR1_70_H12.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_7 TGAATCTTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): GTTCCCTCTTATGACTGAGCATCCACCGGCCTGGCCTGCTCAATCTCACCCCTTCTTCACAAATCATGAGAGTACATCATCGAGAGACCTTAACAGGAGGCCTGAGGGGGGTGCTCCTAGCTGGGCATGGAAGGTGACAGCAGCTCCTCCTCACACCCTGCCATTGCCGCTGTTCTCTTCGTCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGCCACGACAGCTGCCCCATCGGCCTCCCTCCGGTTCGATGCACCGCCATCGTCGTCATCGAGCCATCATCATCGCCGCTGAGAATCAAGAAGCCACACTGTAAATCTGCTGGGAAGCTGGCATTTTTCCCCCCTCTGGGCGTTGCAACTTTTTCGGTTTTGCGCCGGCTGGGGTGGTTTCTTGTAGTGGATCGATTGGATTCTTCATAACTGTATTTGCACACTGTCATACTGCCCAAGTGAAAATGCTCCTCTCTTTACACTACACAGTACACACACTGCTGCTCTTGGAGCTACTGTTGCTGCTAGAGATTGACTAACTTAAGCATCTGAGATACTTTGATTGATCTATATATACATTGTGTAGAGAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|57804207|gb|CX606564.1|CX606564 ANR1_3_F03.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_3_F03_A002 5', mRNA sequen TGAATCTTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): CAGGCAGGCATGTCGACACGACGGTGACGCCGGAGCCGCCGCACGTCCTGGCCGTGGACGATAGCATCGTCGATCGTGCTGTCATCTCCAGGCTCCTGCGCAGCTCCAAATACCGAGTTACGACGGTGGACAGCGGCAAGAGAGCCTTGGAGGTTCTCAGCCTGGATGACAGCGTGCACATGATCATCACGGATTACTGCATGCCGGAGATGAGCGGGTACGAGCTCCTGAAGCGGGTCAAGGAGTCAGCTGAGCTGCGGGAGATCCCCGTGGTGCTCATGTCGTCGGAGAACTCGCCGACGAGGATCCGGCGGTGCCTGGAGGAGGGTGCCGAGGAGTTCCTCATCAAGCCGGTGAGGGCCTCCGACGTGTCGCGCCTCTGCAGCCGCCTCGTCAGCACCTGCAGGCGCTAGCAGCTTGCTTCTTCGATTCACTTCTTCCTTGAGCTGGATGGAATAGAATTATTGATGGCTCCTAGCTAGCTCGCCAGCAAGCCTACTAATAATATATCCCATCCCATGCATGTATACTGACCGACCAATGCAACAACCAAACAACCAGCAGATGCAGATCATCAGGATTCAGGGTTAGTTTATTTATAGGATGGGGTTGTTCGTGGATGAGATAGATAGAGGGCTGAATTTGACCCTCCCTTGAAATTAGTATACTTGACGCAGGAGGAACGCAATTCTGTACATTTTGTAATACTAATAATGACATTAGCATTTTACCCGATTGAGGCAGTT | |||||||||
gi|160710010|gb|EH410468.1|EH410468 RTHAIR1_54_A03.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_5 TGAATCTTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): GGGGGGTGCTCCTAGCTGGGCATGGAAGGGGACAGCAGCTCCTCCTCACACCCTGCCATTGGCGCTGTTCTCTTCGGCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGCCACGACAGCTGCCCCATCGGGCTCCCTCCG | |||||||||
gi|9850245|gb|BE595172.1|BE595172 PI1_46_G11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGAATCTTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGATATCTTGGGCTATTCGACAGCGAAGTAGAGGCTGCAAGGGCTTACGATAAGGCCGCAATCAAATGCAATGGTAGAGAGGCCGTGACGAATTTCGAGCCAAGCACATATGATGGGGAGCTGCTGACTGAAGTTAGCACTGAAGTTGCTGAAGTTGATCTGAACTTGAGCATATCTCAACCGGCATCTCAGAGCCCCAAAAGAGATAAGAGCTGCCTAAGCCTGCAGCTCCACCATGGATCATTTGAGGGCTCCGAATCGAAAAAAACAAAGATTGATACTCCCTCTGAGCTGTCGGGCCACCCTCATCGGTTCCCTCTTATGACTGAGCATCCACCGGCCTGGCCTGCTCAATCTCACCCCTTCTTCACAAATCATGAGAGTACATCATCGAGAGACCTTAACAGGAGGCCTGAGGGGGGTGCTCCTAGCTGGGCATGGAACGTGACAGCAGCTCCTCCTCACACCCTGCCATTGCCGCTGTTCTCTTCGTCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGCCACGACAGCTGCCCCATCGG | |||||||||
gi|6674747|gb|AW284903.1|AW284903 LG1_295_F07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence TGAATCTTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): GATAAGGAAGAAAGAGAATGGCATTATCAAGATTCAAGGGAGGAAGGAGGGGAGGAATGGTGTCCTTCAGTTTGACACTGAGATCTTTGAGATTACAGCATCCTACCATCTCATTGAGATGAAACAAACAAGTGGTGATTCAGTTGAGTACCAGAAACTGTTGGAAGAGGACATCCGGCCAGGGCTGAAGGACATTGTCTGGTCCTGGCATGGAGATGATCTGCAGCAAAAGCAGGAGTAGCTTCGGATGTCTCACATAGATTTTGTTCTGAAAATTCGTTGGATTTTCAGCTCAGAGTGATTCTGTTCTACATTTGATGTCTTATTTTTTTAGCAGCTATATTCTTTTTATGTATTGGAGGAGCATGGTGTTGATGTGAACCATTAGGCTATATATATTTTGTTGAGTTGTTGTGTTACATTCCGAAGATTGTTCCAGTTTTGTAATGGCTGTAAATATCAATAATGAAATTAAATGTTGTTGATCCTT | |||||||||
gi|45984041|gb|CN145115.1|CN145115 WOUND1_26_H04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_26_H04_A002 5', mRNA s TGAATCTTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): TGACTGCTGTGCTACTGTCCGCCGCCGCAGGCATCCTTTTTCTTCTCTTATCCTAGGTTCAGGTTCAGCTCTCGAGTTTTCAGGATGAAGGTAATAGCTGCCTACCTGCTTGCTGTTCTGGGTGGAAACACTTCTCCGACTGCTGATGATGTTAAGAACATTCTGGAATCAGTTGGTGCTGAAGCTGATGAAGAGGAACTGGAGTTCCTGCTCACAGAACTCAAAGACAAGGACATAACAGAAGTGATTGCAGCCGGAAGGGAAAGGTTATCCTCTGTGACTTCAGGTGGTGGTGCAATTGCCATGGGAGCTCCGGCTGCTGCAGCTGGTGGTGCGGCACCTGCTGAAGAGCCAAAGAAGGAGGAGAAAGTCGAAGAGAAGGAAGAGTCTGATGAACATATGGGTTTCAGCTTGTTCGATTAAAGCACCACTGCCCGTTTCCAGTTTCTCTCGCGAATGGTCCCATAATATTGGCCGGTGTCCACGAAATAACAGTGTCAATAGCTACTACATACTTATGCTATTTTGCGTGTGATATACGAGTGTGCATCTTCTTCAGGAATCTTTAAGTCGAATGGTCCCATAATAATATTGGTAACAATGTATAATTGTATATGTCTAGTACGTACCTTGGTATCATGATATCTCAGTGTGCATCATCAAGAATCACAAGTTGAATGTTATCTACATATATT | |||||||||