| mature miRNA: TGAATTGATTTGGCCGGGTGT species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21161731|gb|BJ483280.1|BJ483280 BJ483280 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGAATTGATTTGGCCG-GGTGT EST sequence (targeted fragment marked with yellow): AACTTCCACCTCATGTGTGGGAGCAATGGTCAAAACCATACATCAGACAGATTGTGGCTAAGATTAAGACAGAATGCCCTCACATACCACTCGTACTGTATATAAATGGAAATGGAGGCTTGCTTGAGCGCATGAAGGACATAGGAGTTGATGTTATTGGGCTTGACTGGACAGTGGATATGGCAGATGGAAGGAGGCGCATTGGTGATGGAATTAGTGTACAAGGGAATGTGGACCCAGCATATCTATTTTCACCATTACCAGTATTGACTGATGAAATCCATAGGGTTGTGAAATCAGCTGGCCCGAAAGGTCATATACTTAACTTGGGCCATGGTGTTCTTCAGCAAACACCAGAAGAAGCCGTAGCACATTTCTTTGATGTCACAAGGAGCTTGAGATATGACACCCTTTTCCAGGGTCAACTTACTGAAGAATTGCAACCTGTTGCTTGATGGTGGCCGGCAGCATTGCGATATTTTTTGGCCTTACTGTTCTCAGCTCAACACCTTCTACATATTAGAGTTCATTCCCTTTTGCTGGAGCTGTTCCTTGTAGAGACACCATGGCCAAATCAACTCAATCTTGTTCATTATGCATCTGTGTATTTCAGTCATTCATGTACTGGCAAAGAAAAGGCGTGCCTCCGNCTTTAGAAGGGAGC | |||||||||
gi|161465615|gb|EX579813.1|EX579813 HDP30I12w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP30I12, mRNA sequence TGAATTGATTTGGCCG-GGTGT EST sequence (targeted fragment marked with yellow): GACAGATGGAAGGAGGCGCATTGGTGATGGAATTAGTGTACAAGGGAATGTGGACCCAGCATATCTATTTTCACCATTACCAGTATTGACTGATGAAATCCATAGGGTTGTGAAATCAGCTGGCCCGAAAGGTCATATACTTAACTTGGGCCATGGTGTTCTTCAGCAAACACCAGAAGAAGCCGTAGCACATTTCTTTGATGTCACAAGGAGCTTGAGATATGACACCCTTTTCCAGGGTCAACTTACTGAAGAATTGCAACCTGTTGCTTGATGGTGGCCGGCAGCATTGCGATATTTTTTGGCCTTACTGTTCTCAGCTCAACACCTTCTACATATTAGAGTTCATTCCCTTTTGCTGGAGCTGTTCCTTGTAGAGACACCATGGCCAAATCAACTCAATTTTTTCATTATGCATCTGTGTATTTCAGTCATTCATGTACTTGGCAAAGAAAAGGCGTGCCTCCTGCTTTTAGAAGGGAGCTGGAGTTTATT | |||||||||
gi|166073194|gb|FD524228.1|FD524228 RUS73F07w HF Hordeum vulgare subsp. vulgare cDNA clone HF18H08, mRNA sequence TGAATTGATTTGGCCGGGTGT EST sequence (targeted fragment marked with yellow): CAGCTAACCATCCCGTTATACAAGTACATCGGTACAAGAGTTTACAATTTTTTAACACTTACACACTGAAGCTTGGGACCAAAGCAAATGTGCATCATGTCCCTGATTTACTAGTCCATTTTGTTTTGCAAACTACCATGCTGGCAAAAAAAAATCAGTGCTCAACCTGAGTATCAGTGATGCCATCAACCATGTCATCCCAGATCTTGACCGGTAGTCAGCCGTAACATTTGCATACTGTGCAAGACCTCTCTAACCACAAGTTGCCATCAGATTATCACATACACAAAGTGATGACGCCAGAAGGAAGGAAGCTAGCAGTTTGAATATGATCAAGACTCTTCACATAGAATAGGTTGGTATGTAAATTGTTGAGGAATCGAGACTGATTGAAACAGTGCTATGCACAAACTGGAAACAGGGCCATCATATGTCACCTCATCATACATAAAAGCAGAGCACCTGGTTAAATCAATACACCTCTACACCAAACCTGTCGGCTGAAGACTTGTTGTCGGGTGCTCTGTATTTCCACTGTGATCTTCAGCAGTAGGTACTATAGAAGAAAAGTCCTCAACCTAGCACATTAGGAGAGCCCCTGGAAAACAGATGTCCCCTCTTCAAGAAGAAAAAATCAATGTCCAAGCAATTCTGGGTCCCCAACGTACTCTGCAATCTGATCATATTTC | |||||||||
gi|161477607|gb|EX594670.1|EX594670 HDP32B12w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP32B12, mRNA sequence TGAATTGATTTGGCCG-GGTGT EST sequence (targeted fragment marked with yellow): GAAGGACATAGGAGTTGATGTTATTGGGCTTGACTGGACAGTGGATATGGCAGATGGAAGGAGGCGCATTGGTGATGGAATTAGTGTACAAGGGAATGTGGACCCAGCATATCTATTTTCACCATTACCAGTATTGACTGATGAAATCCATAGGGTTGTGAAATCAGCTGGCCCGAAAGGTCATATACTTAACTTGGGCCATGGTGTTCTTCAGCAAACACCAGAAGAAGCCGTAGCACATTTCTTTGATGTCACAAGGAGCTTGAGATATGACACCCTTTTCCAGGGTCAACTTACTGAAGAATTGCAACCTGTTGCTTGATGGTGGCCGGCAGCATTGCGATATTTTTTGGCCTTACTGTTCTCAGCTCAACACCTTCTACATATTAGAGTTCATTCCCTTTTGCTGGAGCTGTTCCTTGTAGAGACACCATGGCCAAATCAACTCAATTTTGTTCATTATGCATCTGTGTATTTCAGTCATTCATGTACTTGGCAAAGAAAAGGCGTGCCTCCTGCTTTTAGAAGGGAGCTGGAGTTTATTCAAGTGGGTTGTCCAACCCTTTCTGTTTT | |||||||||
gi|21134235|gb|BJ455669.1|BJ455669 BJ455669 K. Sato unpublished cDNA library, cv. Akashinriki vegetative stage leaves Hordeum vu TGAATTGATTTGGCCGGGTGT EST sequence (targeted fragment marked with yellow): ACCTCATGTGTGGGAGCAATGGTCAAAACCATACATCAGACAGATTGTGGCTAAGATTAAGACAGAATGCCCTCACATACCACTCGTACTGTATATAAATGGAAATGGAGGCTTGCTTGAGCGCATGAAGGACATAGGAGTTGATGTTATTGGGCTTGACTGGACAGTGGATATGGCAGATGGAAGGAGGCGCATTGGTGATGGAATTAGTGTACAAGGGAATGTGGACCCAGCATATCTATTTTCACCATTACCAGTATTGACTGATGAAATCCATAGGGTTGTGAAATCAGCTGGCCCGAAAGGTCATATACTTAACTTGGGCCATGGTGTTCTTCAGCAAACACCAGAAGAAGCCGTAGCACATTTCTTTGATGTCACAAGGAGCTTGAGATATGACACCCTTTTCCAGGGTCAACTTACTGAAGAATTGCAACCTGTTGCTTGATGGTGGCCGGCAGCATTGCGATATTTTTTGGCCTTACTGTTCTCAGCTCAACACCTTCTACATATTAGAGTTCATTCCCTTTTGCTGGAGCTGTTNCCTTGTAGAGACACCAGGCCAAATCAACTCAATT | |||||||||
gi|21145141|gb|BJ466635.1|BJ466635 BJ466635 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare TGAATTGATTTGGCCG-GGTGT EST sequence (targeted fragment marked with yellow): CAAAACCATACATCANACAGATTGTGGNTAAGATTAAGACAGAATGCCCTCACATACCACTCGTACTGTATATAAATGGAAATGGAGGCTTGCTTGAGCGCATGAAGGACATAGGAGTTGATGTTATTGGGCTTGACTGGACAGTGGATATGGCAGATGGAAGGAGGCGCATTGGTGATGGAATTAGTGTACAAGGGAATGTGGACCCAGCATATCTATTTTCACCATTACCAGTATTGACTGATGAAATCCATAGGGTTGTGAAATCAGCTGGCCCGAAAGGTCATATACTTAACTTGGGCCATGGTGTTCTTCAGCAAACACCAGAAGAAGCCGTAGCACATTTCTTTGATGTCACAAGGAGCTTGAGATATGACACCCTTTTCCAGGGTCAACTTACTGAAGAATTGCAACCTGTTGCTTGATGGTGGCCGGCAGCATTGCGATATTTTTTGGCCTTACTGTTCTCAGCTCAACACCTTCTACATATTAGAGTTCATTCCCTTTTGCTGGAGCTGTTCCTTGTAGAGACACCATGGCCAAATCAACTCAATTTTGTTCATTATGCATACTGTGTATTTCAGTCATTCATGTACTTGGCAAAGNAAAAGGCGTG | |||||||||