| mature miRNA: TGACAACGAGAGAGAGCACGC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88237825|gb|CI237674.1|CI237674 CI237674 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat TGACAACGAGAGAGAGCACGC EST sequence (targeted fragment marked with yellow): TTTTTTTTTCTTGCAAAGGCACAGTCTTCACAATTGCATTTCCACCACGACTGCCCAGCATACACGACGCAAGAAAGTAGGAAAAGATTCAGAGAAGAAAGGAGTGTGAATAGCATCAAGGCTGAATCTTCGAAACCGATGAACACGATTTACACACGAATCTGCAGAGCCTTGAAGGCCAGAGAATGTAGCAGCGGGTTAGATCCGTGGCTCGCGATCAGACGATGGTGCAGGAGTAGCCTGGGTGGTCGTCGACGGCGACGTAGTAGGGCCGGCACGCCCTGCAGCACTGCTGCAGCTCGGCGCACTGCTTGAGCTTCTCGGCGCACTCCTTCTTCTTCTTCTCTTCCTCCTCCTTCTCCTTCTCCTTCTTCTTCTTCTCCTCCTCGTCCTTCTTCTTCTTCTCCTCGGCCTCCTTCTTCTCGTCGCTCACCGCCATCACCTCCACCATGTACCCCTCCCTCTTCTCCTTCCCCTTCTTCGGGTGCCGGAGCTTGTCCACGATCACCACCACGTCCACCTCCCCGATCACCGTCAGCGTGCTCTTCTCGTCGTCGAAC | |||||||||
gi|86598099|gb|CI278489.1|CI278489 CI278489 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa TGACAACGAGAGAGAGCACGC EST sequence (targeted fragment marked with yellow): ACTGAAAATGTCTTGTCAAACATGGTTAATATAACAGCATTCTAACAGTGCAGAATAGTAGGGTTTTTCCTGTGGCTGGCATCGTGGAACAAGAAAACCAGGATCCAGCCATCATTTATCAACTGAACAAAAGCGTGACCCAGAACTACTTAAGTAATTTAAGAACATCATCGTCTCCTCCGCGATGGTGCGACGACAGTTCGTGTACTAGAAGATAGCTACTGAAAGCCGAAGACATCAATGTCCATTGCCCCAACAACAACAGATGGTGCATCAGACTGGCGTCCGAATTCATCTCACTGATCCCCAGGCTCTTTTGGAGCTGCGGCTTCCTTGATTTCGTCACCACCATCATCATTGGCATCTGAAGTCCACAGAGTCAAGTTGTCACGCAGGAGCTGCATGATCAAAGTGCTGTCCTTGTAGGATTCTTCACCAAGGCTGTCCAGTTCTGATATGGCCTCATCAAACGCCTGCTTCGCGAGGTTGCAGGCACGGTCAAGGGAGTTCAAGATCTCATAGTAGAACACTGAAAAGTTGAGTGCAAGCCCAAGCCTTATGGGGTGGGTCGGAGCCAAATCTGCGAGAGCAATGTCCTGAGCAGCCTTGTATGCATTCATGGTGCTCTCCGCAGCCTGCTTCCTCTCGTTGCCAGACTTAAACTCCGCAAGGTACCTGTGGTAGTCGCCCTTCATCTTGA | |||||||||
gi|117221542|gb|CT859070.1|CT859070 CT859070 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TGACAACGAGAGAGAGCACGC EST sequence (targeted fragment marked with yellow): ATATTGTTGAAGTATACCTCGAAGCTTCCTGTCTTCAATCTTCTGATCGATCCAACCTCGCTCGTCTATGGCGCGAGGATCTACTCTTCTTCTACCTCAGGTTCAGGTTGATTTCTTGCCCGGCCAGCCGACGAAGATTTGGTTGGTTAGTTTGCTCGCCGGCCGGCGGTGACAACGAGAGAGAGCACGCCGGTGCGGCGGTCACGGTGAGCCGGCCCGCGGCGGCGTACCTGCGTGCTTTCTCCCGTTGTCACTGCCATACACACATATATGCTCTCGCTCGCATGCACAAGCTCAGCTTCTCCTCTCAGTCTCACTGGTGAGTATACTTACTCAACTCAATCACCAATTCACCATACTTAGCTATATATAGTTATATGTACCCCCATCCCCTAAATGTTCTCTTATTGTTTATGCTGTTGTGACTAATCAATTTCAACCGCATATGCATGCATATGGTTTTGTTTCCTTCATCTTTAGTGAGCCTTTTCGCATGAAAATTCTTTGAAGACGTCTCCACACGATTTGTTTTTCTCTGTTGACCTTTCCACATCAGTAATCGTTTTTTCTTTGAGAAAGGTTGCTTATGTGCATATACTATTTATTAGTTCGTTTGGAGCAAAATGGAGCTTATAAATCATGTCCATCACCTTAGTTTTACAGATTCATAAGATAAATATTTCGCTATTTTTTGTTAAGAACTTGATGGCATAATTTCCCCTAATTACTTTCATGCGAACTTTGTTCAGTATTTTATCTACTGAACTCATCGTTTACATTATATTGTTGCATGCATTAGTACTAGTACTAGTATTAGGCAAGTGCAGGACCACATGAATTTTAAGGTTATGATCAGACTCCTAGGCACTCTCTGCTAACTCAACTAAACTTGCAGAGTATTAATGCAGTACTGCTCCATCATTAGTGGCTCAGTGCTGGTTATCTGGGACTATATGAATTTAGTACTCCATCCGTTTCTAAATATAGGTCATTTTGGGAGTTATTTACCCTTCCTTTAGAATATAAGAAAAATTAAGGACTTTTTGATTCCTGCCCTTTGTACCCCATTTTTTCCCCCCTTACCCTTTGGCTAATTGGAAAAACACTAACCCCCTCTGGAAAGTATAAAAAAAAAAGGGGGGGTATTATTTTTTTTTTTTTCCCAAGGGGAAAAAAAAACTGCGGCGGGGGGAAAAACAAAGAATTTTTTATTTTTTTAACCACCCACAATTTTTTCTTCTTTATTTTTTTCTTTTGTTGGGGGTGGTGTTGGCCCACCCACAAACACTCTTAT | |||||||||
gi|66915304|gb|CX102152.1|CX102152 RECm3131 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TGACAACGAGAGAGAGCACGC EST sequence (targeted fragment marked with yellow): CGCTCTTTTTCTTTCTTTCTTTTCTCTTGTTTCTTCGTCTCCTCTCTCTCTTTTTTTTGTGTGTCTTGTTTTCTCTTGTTCTTTTTTTTTTTTTCTTTTTGTGTTCTCTCCTGTTTGTTCTCTCTTGTTGTCTTCTTCTTTTCTGGGGGGCGGCAGGACGAGAGACGAGAAAGAAGAGGCACCTTCTATTCCTGTATTCTGTGTCTCTTTGCTCTTGTGTTTTTTCACCCCATTTGTTGCTGTGTCTTGTGATATGTTTATAGGTCTTTTTTACCAAGGTAAATCCTTTTAACATTAACGGGGACTTAGCTTAAACGCTTTAACCAAATAGCTGGGTACCCACGGTAATTTTCGTGATACCCCCACCTCAACGCTACAGTAATTACCGACATTTATGCACACCTCGCCGTCGCCGGAGCCGGAGAAGACGAGACAGCTAGACCTCGACGCGGCAGTAGGTGGCGGTCTGGAACTTGAGGCCATTGGCGCCGGGGTAGCCGTTGCCGCCGGAGGCGATGAAGAAGGCCGGGCAGGTGACGAAGAGGTGGTAGTGGCCGGAGATCCAGCTGCCGACCTTCCACCGGACGCGGCCGTCGATCTTGACCTGGAGGATGAGGTACTCCGCCGCGACGTCCTTGGCGAGGGCGTCGCCGAGGTAGGGCGCGAAGGGGACGTCCGGGCCGGAGAGCACCGGCGACCAGACGTCGACGTCGCCGTGGCCCTGGTACACCGGCGGGAGCGAGGCGGCGAGCGTGATCTGCTGGTACTTGTAGGAGGCGTAGACGTCGAGGCGGTCGTAGTAGACGCCGACGCGGTCATTGGGGTTGCGGGAGGCGACGGTGACCTGGAGGGCGGTGGAGAGGACGCCGGAGGTGGAGGAATTGGAGAGGTCGAGCTGGCGGAGCGTGGCGTCCTGGAGGAAGAAGCGAGGGTGGGTGGGGCGGAGCACGAGGTAGACGATGAGCGCGATGATGGCCACGATCAGGGCGCCCACGCGTCCGCCCACGCGTCCGC | |||||||||
gi|117219445|gb|CT858635.1|CT858635 CT858635 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TGACAACGAGAGAGAGCACGC EST sequence (targeted fragment marked with yellow): GCCCACCCAAAGCTCGCCTCGCCTAGCGACGATCGCGAGCACTCCTCCTCCTCCTCCTCCTCCGACTCCGATCAAATCACACCGGAGAAACCTCGCCGTCCGGCCACACCGGCGGCGCGCGCTCTCTCGTTGTCGGGGGGGTTGGCGGTGGCGCAGCCGCGGGGCGAGAAAAATCTGGTCTCGGACGCCCGGCTTTGTTGACTAAAACCGGGCGGGCGGCGGGCGGCGGCGACGACTTCGCACGCGATCCGCGCCTTCCTTCCTCTTCTTCCCTTGTTTGGTGCCTCGCCTCGTCTCTCCTCTATTTCTTTTCGCTTGGTTTAGTTGGATTTTTGCGTTCTTGGTGGTGGTGGTGGTAGTGGTCGTCGTCGTCGGCAACGCGGGAGACTTAGCGTTCTTGGTGGTGTTCGCGATCTTTGCGGCGTCCAGTGGCAGTGGATTGCGGTGGTGGGATTGGCGCGGATTCTGTTTTGCTCGTTTGGTTGTCGATCGCCGGCGGTGGATTCCGGTGGTGGAGGTGTTTGGGTTGTGAGCTCGTCGGCGGCGGCGGCGGCGCATTGGGTGTTGGGGGCCGAGATGGGCGGCGTGTGCTCGGCGGGGATCCCGGGGGACAGGTCGCCGGCGGAGTTGTCGTTCCGGGCGATGGGGCTCGTGGTGGAGCAGGAGCTCAAGGCGTTCCCGGCCGTCGCCGGCAAGGTGCAGGGGAAGCACAAGACGGCGCCGGTGGAGGTGGCGCCGGAGCCCGATCCGCCGCGCCGCCTCTCCCCCGAGAAGGCCCCCCGGCTGTCCACCGGCGGCGGCGGCGGCAAGGGCTCGCCGGTCCGGTCTCCAAGGAGCCCGAACTTGGGGCGCTCCCTCGCCGGAAAAAACTCCAGGCCGGGGAGGTCCAGGGACAAGCACCCTCCGGGGAAGGGTTTCAAAAAAAAGGGCTCGGGGGTTTTGGGGGAAGCCCCGCCCCTTCCGGGGGGATTTGGGGAAAAACCAGTGGGAAGGGTTTTTGGGGACCCCCCCTGGAAACAACCCCCCACTTTAGCACAAAATTTTTTGAAGCCCCCCGGGGGAGGGGGGGGGGGGTTTTTGGGGGGGGGGGGGGGGGCGGCGCCAAAAAAAATGAAAAAAAGGGGGGAGGAGCCGCCACCCCCCACAAAAACAAAAAAAAATATCCTCTGTGGGGGGGCGGGTCTTTTGGGAGGGGGGTGGTTGTGTGGCCGCCCCAAAAAACAACCAACACAAAAAAATTATATAAGAGTAGTGAAAAAGAAG | |||||||||
gi|88986716|gb|CI033859.1|CI033859 CI033859 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TGACAACGAGAGAGAGCACGC EST sequence (targeted fragment marked with yellow): TTTAAGAGAGAAAGGAGTGTGAATAGCATCAAGGCTGAATCTTCGAAACCGATGAACACGATTTACACACGAATCTGCAGAGCCTTGAAGGCCAGAGAATGTAGCAGCGGGTTAGATCCGTGGCTCGCGATCAGACGATGGTGCAGGAGTAGCCTGGGTGGTCGTCGACGGCGACGTAGTAGGGCCGGCACGCCCTGCAGCACTGCTGCAGCTCGGCGCACTGCTTGAGCTTCTCGGCGCACTCCTTCTTCTTCTTCTCTTCCTCCTCCTTCTCCTTCTCCTTCTTCTTCTTCTCCTCCTCGTCCTTCTTCTTCTTCTCCTCGGCCTCCTTCTTCTCGTCGCTCACCGCCATCACCTCCACCATGTACCCCTCCCTCTTCTCCTTCCCCTTCTTCGGGTGCCGGAGCTTGTCCACGATCACCACCACGTCCACCTCCCCGATCACCGTCAGCGTGCTCTTCTCGTCGTCGAACGTCAGCGACTTGACCCCTTTGTTCCTTGAGACGATCTGCAGGATGCAGGATTTGCACTTCTTGCAGGTGATCGGCACCTTGAGCACTATCTTC | |||||||||
gi|58678728|gb|CK067415.1|CK067415 76714rsicem_26489.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G TGACAACGAGAGAGAGCACGC EST sequence (targeted fragment marked with yellow): CTGCAGGAATTCGGCACGAGGGGAAGGCAGGAGGAGAAGCACGCACATACCAGCAGGAGGTGCAGGACTGCGTGCTCCTTCTCGTTGTTCCTTACTCACCTTTTGCCTCTCGCTGCCTTGCCCCACAGCGACCGGTCTCGTAGCTTAGGTAGTAGTAGCCCAGCCTCTCGCATCACTTCACACTCGCTGCCCACCCTGCCTCCTCTGGTGTCGCCGCTCGACCTCGCTCGCCTCTCGTCTCCAACTCCCCAGCAGCGAGCAGCATCTTCATCACAGCTCTCAGCTCCCTGCAGAGAGGAGGGCACAAGATGGACAGGCTGAACGCGAAGCTGTACCTGCAGAACTGCTACATCATGAAGGAGAACGAGCGGCTGCGCAAGAAGGCGCTGCTGCTGAACCAGGAGAACCAGGCCTTGCTCACCGAGCTCAAGCAGCGGCTCGCCAAGACGAAGGCGGCGGCGGCGGCGGCGGCCGCGACCAAGGCTAACGGCAACGGCAACATGCCCGCCGGCGGCGGCCGCGCGTCCCTCCCCGACCTCAACTCGGCTCCGCCGGCGCACGGCCATGACAAGGCCGTGCCCAAGTCCAAGAAGACGGGCGCCAAGTAATGCAGCTTCGTGGCTGTCATGAACTCATGATCTATGT | |||||||||
gi|58598386|gb|CK008914.1|CK008914 32138rsicef_14268.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica TGACAACGAGAGAGAGCACGC EST sequence (targeted fragment marked with yellow): CTGCAGGAATTCGGCACGAGGCACACCAATAACCACCTGTGCAGCTAGCTAAGCTGTGCTGCTGTGCTCTCTCTCGCTGTCACACACACAGGCAATCTTAGCTAAGCTATAGCTGCAGCTGAAGCAAAGCAAAGGGAAGAAGAGAGGAAGGAGATGGAGCTGGATGAGCAGGCGTTCTTGGAGGAGCTCTTCTCGCTGAGGAGGGACGCGTGGGAGTACAATGCCGTGGGGGACTTCTTCTCGCCGGCGTGCGCCGCCATGGACGGCTTCCAAGAACGGCACCAGTCCACCACCACGGTCAGCGTCCTCCCCACCTTCACGGCCTCCTACGAGCAGCCGCCGCCGGCGCCGGCGGCCGGGTTCGACTGCCTCAGCGAGGTC | |||||||||
gi|66926669|gb|CX113517.1|CX113517 EI082H17 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TGACAACGAGAGAGAGCACGC EST sequence (targeted fragment marked with yellow): CAGCTATAGTCTGCTCTCCTGTGTGCTTTTGTGTGTCGTATGTAGCTTAGTCTAGGTAGCGGCTCTCGCTTACGAGCAGTAGTCGAGATGTCCAATNTCGCATGTACACGATGTGAGCGCGATGTGTCGTGTCTTGTCGTGTCTCATGACGNCTCAGGCTCTAGAGGTGATGCGTTCAGTGGTTAGGTATAACTGATGATGTGTCAGCGGTCTATCGTGCTTTGCTTGTTCGTATGTATTTNTTCACGTGAGTACTGTATGCCATCGTCGTGACATAGGTTCTTATCTGATATTTACTTACTTTCGTGTGTGATATGTGAGTGTATGCATTGTAGCTCGTGCAGTGTCAGTCTGTGGTAGGCTCTTACACGAGAGTCGAGCTCATGGATCGTGTTTGTGATGTTAGAACAGTTGTATAGTAGAGATCAGTCAAAAGGGTAGTGTAGTAGAGATGTATCGCTACTATAGCGTATGCGCGTCATGAGGTGTAGTCGATGTATATTGATACTGATGCATAGTGTGATACGTTGTGCAAGAATACGAGCGCCGTCAACAGTAGATTAATCCTGACCGACGAGTTGTTGAGGGTTGGTGCATGAGCTAGTAGCTGTCGTAGCGCTATGAGTTCACTGTTAGATAGCGTGGAACGTAGCTACATTACAAGTGGATCGAGGATGAGCTGCTGGTCAGGAGTGATCATTGCGTACGCCGAGTAGTAGACGAGGACGAGGATGAGTCGCATCGACGCATGACTCTGGTCGGTGAATACGTTGTCGAGGAGTACATGAACGGATTGATGATTCGGATTACGTAGTTGTAGACGAGAGCTACGTGCGTCCATCGTTGCATGCTCGCTCTAGTTGTCACACGGCATAGGCTGCAGTATCTCTGGCTGCGGCAGTCTGCGCTCCTGTCTGTGAGCGTGTATGTTGTGAAATGCGTCATAGTAGATGGTGCTGACTGTACTCTAGCACTAGCTGCTGCTGCTNGTCAGTA | |||||||||
gi|30227931|gb|CB965823.1|CB965823 NL27_E03 Drought stress (leaf) Oryza sativa Indica Group cDNA clone NL27_E03 3', mRNA sequenc TGACAACGAGAGAGAGCACGC EST sequence (targeted fragment marked with yellow): GCACATACCAGCAGGAGGGTGCAGGACTGCGTGCTCCTTCTCGTTGTTCCTTATGCACCTTTTGCCTCTGCGCTGCCTTGCCCCACAGCGACCGGTCTGCGTAGCTTAGGTGAGTAGTAGCCCAGCCTGCTCGCATCACTTCACACTCGCTGCCCACCCTGCCTCCTCTGGTGTCGCCGCTGCGACCTGCTGCTGCGCCTGCTGCGTCTGCCAACTGCCCCAGCAGCGAGCAGCATCTGTGCATCACAGCTCTCAGCTCCCTGCAGAGAGGAGGGCACAAGATGGACAGGCTGAACGCGAAGCTGTACCTGCAGAACTGCTACATCATGAAGGAGAACGAGCGGCTGCGCAAGAAGGCGCTGCTGCTGAACCAGGAGAACCAGGCCTTGCTCACCGAGCTCAAGCAGCGGCTCGCCAAGACGAAGGCGGCGGCGGCGGCGGCGGCCGCGACCAAGGCTAACGGCAACGGCAACATGCCCGCCGGCGGC | |||||||||