| mature miRNA: TGACAGAAGAGAGAGAGCAC species: Helianthus annuus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22385698|gb|BQ968177.1|BQ968177 QHB33B17.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB33B17, mRNA sequenc TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CTGTTAGAATTTGATGGGAAGAAGCGGAGCTGTCGCCAGAGGCTTTCTGACCACAATGCCCGTCGCCGAAAGCCACAAAAAGAAAAAGAAACTGTCCACTTTAACTCAAGAAGTCAGTCTTCATCATTTTATGATGGGCAACATCAAATAAGTTTTGTGTCTAACAATGTTCCTGAACTGGTTCAACCCGAACCTGCTTTGAACTCTATTTGGGAAACCACACGCAATTCCCAGCACACAGCCGGTGTTTTTCATCAAGGTTTGTTTTCCTAATTACTCTATCGACAGTAGTTTTGATAATTTATCGTATGATTAGTTACTTTCGTATGCATGTTCCAACGCAAAAGCATACCGTGCTCTCTCTCTTCTGTCAAACAATTCATGGGGTTCATGTGAGTCGGACTTCAGCGCACTTGACCAACCCATGCATGCAAATGGTACCACTATGGCGCAACATGGGATGCATTCCGCTCACCACAATTTGTCACCTGAGAACTGGCAAGTTGACCCCCACATTCAAGAATCTCATATTCTCAAAGAACCGTATGGATATTATTAATATGTGAATTAAATTG | |||||||||
gi|19525491|gb|AJ437952.1|AJ437952 AJ437952 HaDplR2 Helianthus annuus cDNA clone HaDplR259G06, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): TATCGACTATCTTGCGCCTCATGATAAAGACCGATTTGCTAGTTAATTACAGTATATCACATGTATTGTTACGTACCCGAGCTCCCTTTGTTACAATAACTGTTATCTTTGTTGCAAAACTTGTTTTTTTATTATACGCGTGTTGTGTCTTTTTTGTCAAAATAAGTTTGTAACTAGTTCGGGGAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|90467303|gb|DY929182.1|DY929182 CHAZ4267.b1_E11.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ4267, mRN TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CGGGGATGAGGGAGGGAGGGTATGGACGATAAGTTTATAAATGAGATGATGGAAGAATGGATTGAGGATGATGATCATGATAATGATGATAGGAAAAAGGGTATAATGGGAAAGAAGAGTTCTAGTAGTAGTAGTAGTAGTGGTAGCTTTTGCCAGGTGGAAGACTGCTCAAGTGATATGAGTCGAGCCAAAACATATCATCGGAGACACAAAGTATGTGAGTTTCATGCTAAGGCTCCAATCGTTGTCATTAGTGGACGCCAACAACGTTTTTGCCAGCAATGCAGCAGGTTTCACGACTTAACTGAATTTGATGATGCCAAAAGGAGTTGTCGTAGGCGCTTAGCTGGACACAACGAACGCAGGCGTAAGACCTCCTATGGAGAAACTTCTGGTTAACGATAATGATAACGATAATATTATTATCGCCAAATAAGAAATATATGTCCGGTAGCAGTAGCGGTAGCCACGCTCCCTCTCTTCTGTCAGTCCCTAAATATATTATCTATTTCGATGCATGGCCATACTTGTACTAAATAACGCAATGCTAATAAATTAAAGAAACCTTCCAGTTCCNNANA | |||||||||
gi|90467030|gb|DY928909.1|DY928909 CHAZ3643.b1_F23.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ3643, mRN TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): TATGAGTTGGTGAAATACCGCAGAGTATACATGGTGTGTAAATACCGCGTCAGTTGCCATTCTGTATTTGTGCTGCACAACTGTGCATGTAACACATCCGGGCGATCCTCTATCGTATCACGCTGCTGTTCGAGCTCGAAATGTACTGAGTCATATTATCCGACTCCAAGCTGTATCACTCACAAGCCACTCGGGGTGTCAGTATCTTGCACAGCCTCCAGCAGCTTGCGCTGCTCTAATGCCCACTAGATTTTGTCAGCCAAGATGCCGGTTCACGAGCTATCGGAATTTGATGAAGCGAAAAGAAGTTGTAGGAGGCGTTTAGCGGGGCACTATGAAAGGCGAAGGAAGAACAACTCACTGGAGTTCAAGAAGGAACTTGTTTGTGTGCACAGCCCAAGGTTTATCCTAGACAATCCAACTTAAACTAGATGGAAAACCTAAATAAAGGAATCTATGCTCCCTCTCTTCTGTCACTTATCCTAGTACTTCAAAACTCTTGTAGTTCTAATAATGTTGTTGTGTTTGGGACTGAAGGTAAT | |||||||||
gi|90469686|gb|DY931544.1|DY931544 CHAZ6448.b1_P04.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ6448, mRN TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): AGCATTTCTTTGAGAATAGTGAGTGAGTTGATGGGGTGTGGTGGTGAAGATGGTGTTGGTGGAGGAGGAAGTTGTTTGAATGTGGATGTGAAGAAGAAGAAAGCATGTCACACAGGCGGTGGATCGTCTAGTGTAACGCGGTGCTGCCAGGCGGAGAAATGTACGAGTGATTTAGCCGAGGCCAAGCCGTATCATCGAAGGCACAAGGTGTGTGAGTATCATGCAAAGGCTCAAGCAGTTGTTGTTGCCGGTATGCACCAAAGATTTTGTCAGCAATGTAGCCGGTTTCACGAGCTATCGGAATTTGATGAAGCGAAAAGAAGTTGTAGGAGGCGTTTAGCGGGGCACAATGAAAGGCGAAGGAAGAACAACTCACTGGAGTTCAAGAAGGAACTTGTTTGTGTGCACAGCCAAAGGTTTATCCAAGAGAATCCAACTTAAACTAGATGGAAAACCTAAATAAAGGAATCTATGCTCCCTCTCTTCTGTCACTTCCTATCCTAGTACTTCAAAACTCTTGTAGTTCTAATAATGTTGTTGTGTTTGGTAATGAAGGTAATGTATAATTAATTATTCTTGTTTGACTTTCTAAAGTCATATTCACCGTTGAATATAACCAATAAACAATACATGAAAGAATGACCTCAGATTATAGTTTGACTTTCCTAAAGTCAAAATACTGAAC | |||||||||