mature miRNA: TGACAGAAGAGAGAGAGCAC species: Populus trichocarpa x Populus deltoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|46841902|gb|CN523533.1|CN523533 GQ015M11.T3_D09 GQ015 Populus trichocarpa x Populus deltoides cDNA clone GQ015M11_D09 5', mRN TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCCATTCAAAGTGCCCAAAGGTCATTGTAGCTGGTTTGGAACGCAGGTTTTGCCAGCAGTGTAGCAGGTTCCATGGTCTGTCAGAGTTTGATGAAAAGAAGAAAAGCTGCCGCAGGCGACTTTCTGATCACAATGCAAGACGCCGCAAACAGCCAGGATCTGTCCATTTGAATCCTTCAAGACTTTCTTCATCATTATATGGTATTGATGAGAGGCAACAGATGAGTCATGTTTGGGACAAGGCGCCACTTGTTCATTCCAGGCCCAATGCAAATTTGACATGGGAAAGCACATCCACCTCCAAGTTCACAATAACAAAAGAGTATATAGCAAAGCCTGCAGAAATAGGTGGTAGTGATAGGAGGCTCCACTTGCCTGGCATTGATCTGACAAATAGCATTGCTATTCAGCACCATCATAAGTCTAATGGCTTCTTACCATCCAAGGCCAAGGGCACTGCAGGATTGGACTACTCTCTCGTTCCTTCCAAAGTGGAAGCAACACCAGAATTTCATCGTGCAACACCAGAATTTCATCGTGCTCTCTCTCTTCTGTCAACCGATTCATGGGGTTCATGTGAGCCACAATCTATTTCATTTGAACAGCCCATGCATGCAAATCACACCAGCATGCCTCAGTCGGTGCTACACACTGTACCCCNAAGCTCACCACTTGCTTCATCAGAGTACTGGAGGACTGAGCAACAGTCAAATGACCCTCAAGTGCATACCTTGAGTTCACGCACTGATGGTAGCNATTACCTTCNNNNNNNNCNGNTGTTNNNNNNGTCAANCNNNNNNGACNNCTATT | |||||||||
gi|73935860|gb|DT519170.1|DT519170 WS02440.B21_I10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02440_I1 TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): ACAAAATATCCGGGAATCAAATACAATGAAATTATCGTGGACAAATTGCTGCATGCAACTTGTCTCGAAGCCTGAGCAATTTGATGTCATGGTGACGCCTAATCTGTATGGCAATCTCGTTGCAAATACAGCTGCAGGTATTACTGGTGGCTCTGGAGTCATGCCAGGAGGCAATGTTGGGGCTGATCATGCTATATTTGAGCAAGGCGCTTCAGCAGGAAATGTAGGAAATGAGAAACTATTGGAACAGAAGACAGCAAACCCAGTTGCGGTGCTTCTCTCTTCTGCCATGATGCTAAGACATCTCCAGTTCCCTTCTTTTGCTGATCGATTAGAAACTGCAGTCAAACAGGTAATCTCAGAGGGCCGTTACCGAACAAAAGATCTAGGAGGATCCAGCACCACCCAAGAGGTTGTTGATGCTGTCATAGGCGCTTTAGACTGACTGGGTCGATACTCATTTAGCTGCTCCTCTCACTAAAACATTTGCTGGTGCTGCTCAGAAGTTTCACCTTCCAGTATTCTTTCTCACGCGTCTACATTTTTGGATTTTATGTCAACCACACTCAAGATTTTATCTTTTATTTCTTACGTTTAATAAATCTCAATCCCATATGATGAATGATGTTGCTATTTGAGTTATATACCTGTAAAGGCGAAAAGATGGTCAGATTCCTGAAGCCTAAAAAGGGTAGAAAAAAAAAAAAAAAAA | |||||||||
gi|28606215|gb|CA822666.1|CA822666 R11F09 two-month-old roots from clone 'Beaupre' Populus trichocarpa x Populus deltoides cDNA TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): TTACGGCCATTCTCGTTTGAACAAGATAAGATGTGATCTCCCCTGGTATTCTCCGAACTTAGACGCCACCGGGCTTATTCCTCAAAGAANGTATTCTCTAGCCCTCTTCTTCTTTCAAACCTGAAAACAGAAAGGACTAGCAGCCTATACTTTTCTATTGATCACGACTCTCGGGTCTTCTTCTTCTTCCTTGCTAGTAGCCGGGCCATCTCTTCAGGCATGATTATAAGCTCTCTCTCTTCTGTTCCGCTCAGCGAAA | |||||||||
gi|73931974|gb|DT515284.1|DT515284 WS02427.B21_C11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02427_C1 TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): TTTTTGTGTTTTTTTTTGCAGAAAATGGAGGGTCTTGTTTGCTCAAACGCTGTCGTTTTGGAGGGCTTCCTCTCTTCTCTCATTGAAGCCGTGGTACTTGAAACAGCCATTGCTGCTTGGAAGGCACTTGCTTTGTCACTTTTCATGATAGGTTCTTTGCCTAACAGATCCAGTGACATCCCAGAAGAGTCAGGCACAAGTCGAGGGTTTCCATTTACTGGGCTTCACGTAAGGAAGAAACCTGATCCTGATAATCAAGATGCCAGTGATACCGAGGATGATGAAGACGATGAGGATGGCCAAGATGATCAGGACGAGGATGATGAAGGCGATGATGAGGATGTGCCTGACAAAGGAGAGGATGGTGAGGATCTGGAGGATGAGCCTGAAGCCAATGGTGATGGTGGCAGTGATGATGATGATGATGAAGAAGACGATGATGATGAGGAAGATGAAGACGACGATGATGACGAGGAGGATGAAGACGAGGATGAAGAGGAGGATGAGGAAGATATTCCCCAGCCACCATCTAAGAAGAGGAAATGAGGCCAAAATCATTTTCCTCTTTTTTTCTTATTTTGTTTTATTTCTCTTGTTAGATTAGGAGTTTGGGTTAACAGGGAGCGTAAGCTGGGAGGATTGAGTGTCTTATCTGCATCCTGGTCGAAAAGATTGTGGCAAGTGTGCGGGCACATATTGGTATTTCTAATGTTTAAGAATTCAGTTGTTTTTACTGTTGCATATAACCCTGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73936828|gb|DT520138.1|DT520138 WS02446.B21.1_L02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02446_ TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): AGAGAGAGAGAGAGAGAGAGAGTTAGGTGTGTGTGTGTGTGAGAGAGAGGGAGAGAGAGAGAGCGCGTGTGTTAGGTGTGAGCTAGGCTGTTTTGCAGGTGAGGAGTGGTAGCGTCGTCGATCGATCATTTCTTTTGGCCTCAGCTCTTCTTCTTCTTCGATCTCAACTGCTTGCTTCAGATCAGATCAGAACCCTTCCAAGCTGCCAATGGAGGTTTTTGGTAAATCCACGATGTCTGCTCCTGCCAATGTTGTTTATCTCTCCACTATCCTTGGCCTTGATTGCCCAATTCCTGTCCACAAATGTGACTGCAAGTGTCAGAATGAACATGTCTTTGGCAACATGTACCGTTGCAGGCTCACTGGTCTCACTCACATCTGTGACAAGAACTGTAACCAGAGAATTTTGTACGACAACCATTCTTCCCTTTGCCGGGCTAGTCGCCAGATTTTCCCCCTTTCCCCAGCTGAGGAGCAGGCTGTCAGAGGAGTTCGCAGGAAGCTCGATGCTGAGAATAGCAGTGCTCCCACTGATAGCTGTTCTTTCAAGCGCAGGCGTGATGCACAGTTTCATCCTTCTCCTTTCGAGAGATCTTTCTCTGCTGTCATTCCAATCTGCAGCCAAGTTGGAGATGGCATGGATATGAGCTAGATATAATATATCGTATACTTGAAATAACCCTTTCTCTTTCTATTCGTAATGTTCCTTTGAAGTTTTTCCTTTATATGTTTCATGAACGGATATGGATGACTTGGAACTTAATGTTGGGTAATTATTACGGTGGACCATAAGAGTCCTCCTCTATGTAGGAACGTTATATTTACTTTTCATGTGTAATGCAATTTAGCGGTTCCAATAGCGTAGCTTGACTTTTGATAGGGGATCTTGAACTCGCTCCATCCACTCTCTTATGAACCTTGAGTTTAATTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73935082|gb|DT518392.1|DT518392 WS02438.B21_A07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02438_A0 TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTTGGAACCTCACCTTTTGAACCCCAAGTTTTCTTTTTTCTTTAATTTTTTTCTTCCAAAAAGAAATGGATGGTAAGGGGAAGCAAATTAGGATGGTGATGGGGAGGGAAGTAATGAAGAAGGATAGTGCTGATGACTCTTCAGATGATGAAGGGTATGAGCAAAACCAGATGGGGTTTATGGAAGATGAATTTTTCGAGAGTAACAAGAAAAAGAAAGTGGTAGTTACTGCTGCTGCTGCTGCTGGTGGAGGAAGGAGGGTGTCAAGTGGTGGTGGAGGAGGGATGAGGTGTTGTCAAGTAGAGAAGTGTACAGCTAATCTGACTGATGCAAAGCAATATCATAGGAGGCATAAGGTTTGTGGACATCATGCTAAGGCTCAGGTTGTGCTTGTAGCTGGAATTAGGCAGAGGTTTTGCCAGCAATGTAGCAGATTCCATGAACTATCAGAATTTGATGAAACCAAAAGAAGCTGTCGCAGGCGGTTGGCCGGACACAATGAGAGGCGAAGGAAGAATGTTATTGAATCTCACGTGGAAGGCTCAAGCCGCAAAGTGAATGGAACTCATGGCACCCAGTTGAAGGATATGGTATGTGGACAGGCTGATGAAAGGGGAAGAATTAAGATAACAATCCAAGAAAATGCCACTTACAAACATTTCCAGATAAGCTAAACCGATTGCTCTCTCTCTTCTGTCATCCTAGGGATGTAGTGATGCTGATACTCTTTCCCTTCTTCTTCTTCTTCTTATTATTATTATTATTATTATTATTATTATTATGTACTTCTCCGGCTAAACAAATGCTAATGTCACATTGTGTGAAAGGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|46840372|gb|CN522003.1|CN522003 GQ0124.B3_L20 GQ012 Populus trichocarpa x Populus deltoides cDNA clone GQ0124_L20 5', mRNA se TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): ATAAATAATCTACTTGATTTTCTTCATCTTGAAACAGAAAAAAAAAACAGAGGATCCCATCTCANNNNATTTCGTTGAGAGAAAAACTGATTGATATTTCAGATTCTACTTCTTACTCTCTCTCTTCTCTCAATTGCCTTAATCCTCTTTTTCCAAGAGGATTTCCATCTCAGTAGATTGATTCTGGTAGTCTATGGCAACTCCTAAGCATGTTAAGTTTTGCACTCACCAGAAGGTGGGAATCCTGTTGATATTCTCTGTTGGCTTTGGCTTTTTCTTGCAGAGTTCATCTTCAAGTGAGGAGACAAGGTGTGAGTCGAGTTCCAATTCCAACAACTCATATTGTGGTTTCAGGAAGTATATTATGGAATCTTATTTTGAAAAATATGATAGCTTGNNNNAANNA | |||||||||
gi|46838138|gb|CN519769.1|CN519769 GQ0106.B3_E02 GQ010 Populus trichocarpa x Populus deltoides cDNA clone GQ0106_E02 5', mRNA se TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): TTCCAACCAAGGTACTAGATATCTACATTTTGGTAGCTCTCAAATATTTTCAACCAGTGTTATGAACGCTGTTTGGACTGGAGCTGCAAAAGCTGAGAGTGATCCAATGCTGAATACTAGTCAATCCTCGATGAACTTCGGTGGCAGAAAAAATCTTTTTCCTGGCTCCTTGTCTTCCAACTATAAAGAAGGAAAGCAGTTCTCTTTCTTACAGGGCACCAGTTCCACAATTCCTGGAGATTCTGTCCATCTAGATGCCAATTCAACGTTAGGAAACAGTGGCAACAGCCAGAAAATGTTCTCTGATGGGCTAAACCGAGTCATAGACTCCAACCGTGCTCTCTCTCTTCTGTCATCTCCACCATCTGAGACTCGGGAGATTGGTTTGAGCGACATGATGCAGCCAGACCTGAACTCTCCTGCTCAGTCCTTGATCCCAAGCTTGAACTATAATGCCCTTGGAATGGAAAGTGAACCAGCAGGATCTGTTTTGGTATCTGATGGCAGCAGCGGCAATGCCAACCTCAATGGTCAGCATATGTTTCAGATCGAACCTGATGGGTCATCTGCAAATGGATCTCACCAGACACTTTCCTTCTCGTGGGAGTAGTACATGCCATTTCTAGTTCTAATCTCCCCCTCTTGATCTAAATCTGATCAATGAAAGAGTTTATTGCCCTTTAATTCTGAAACTTTTAAGATGTTCCATTTTGTTTGCATCACCACTCCAAACAACTCTGGNGNNNNNNNNNNNNCTANNNTATTGTAATATGTACGCATGTANTGNNCTCNNNATA | |||||||||
gi|52535833|gb|CV282858.1|CV282858 WS0185.B21_M17 PTxD-IL-N-A-9 Populus trichocarpa x Populus deltoides cDNA clone WS0185_M17 3' TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GAGTATGTTCTGTGACAGGTTAACACAAATACAAGACTCGGATTGTGCTCTCTCTCTTCTGTCATCAACACAGACGCATGCATCCGGGAACCTCATGGTGCAACATAATTCAGTCCCTTTATCGCATCCTATAGGCCCAACAGTACATGATCATGGTTTAGGGCCAATTGATTCAGTTTTGGTTTTCAATAACAGGGATGCTAATGTCCATTTTCCAGGAACGTTTCAACCGCAGTTTGGTGGTTCCTCTGGCAACAAAGCCCCTCAAACACTTCCATTTAACTGGGAGTAATAATCTCCTGGACTCCCATTTTGATGCACAATAATTTTGGATTCTTGCTGAAATATTCCTCAAGGGATTCTCATCTTTACTAACTAGAATGCTGGATTGTTTAAGTTGTTTTTTTAATGATTGACAGCAAATTGAAAATGTTAGTAGTTCAATTTTTATCCTTCCATTGTTACAAAACCTTGTATCATATCATTCTGTGACTAGGAGATCTTCATCAGCTAGTACTAGCAAATTATGAATTGCATTTGAGAAATTGAAAAAAAAAAAAAAAAA | |||||||||
gi|52507540|gb|CV254565.1|CV254565 WS0241.B21_J05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS0241_J05 TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGACCAGTCCATCGTCTTCAAGGACTGCCTCTTTGACAAAACAAACAACCTCCACCTCCGTCTCTACAAACCCACTTCAATGTCACCGTCATCCCCTGCAAAGAAGTTTTCTGTCATTCTTTTCCTTCATGGAGGTGGCTTTTGTGTAGGCACGCGTGACTGGCCTAACTTTCACAACTGCTGCCTTAAACTAGCTTCTGGGCTCAACGCCCTCGTTGTGGCCCCGGACTATCGTTTGGCCCCAGAACATAGGCTCCCGGCGGCCATGGAGGATGGATATAGTGCCTTGCAGTGGCTCCAAGCTCAGGTTTTGAGCGACAAAGGTGATGCATGGGTCAATGGTGGTGAGGTTGACTATGACCAGGTTTTTATCTTGGGTGACTCGTCTGGTGGCAATATTGCACACCACTTAGCCGTTCAGATCGGGGCTGGTTCGACTGGGTTGGCTCCAGTTCGGGTAAGAGGATATATCCTAATGGCACCATTTTTTGGAGGGGTTGCCAGGACAAAATCAGAGGAAGGGCCTAGTGAACACTTGTTGAACTTGGAAATACTGGATCGGTACGTTAACATACTACTCCAATTAATCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTTTTGTCACAGTTAATTCTAATGGTATACGTACGTAGATCAAACTATTTTGATGTGATGTAGACAACAATTTCTTGTACCTTACATTACATGATATATACTTGATTTATCATATATACAAACATATGATCGATGGATCTTTGGGCTGCAATTCATTTTAATTGTATCGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73935934|gb|DT519244.1|DT519244 WS02440.B21_N06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02440_N0 TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GAGAGAGAGAGAGAGAGTTAGGTGTGTGTGTGTGAGAGAGAGAGCGAGAGAGAGAGAGCGCGTGTGTTAGGTGTGAGCTAGGCTGTTTTGCAGGTGAGGAGTGGTAGCGTCGTCGATCGATCATTTCTTTTGGCCTCAGCTCTTCTTCTTCTTCGATCTCAACTGCTTGCTTCAGATCAGATCAGAACCCTTCCAAGCTGCCAATGGAGGTTTTTGGTAAATCCACGATGTCTGCTCCTGCCAATGTTGTTTATCTCTCCACTATCCTTGGCCTTGATGGCCCAATTCCTGTCCACAAATGTGACTGCAAGTGTCAGAATGAACATGTCTTTGGCAACATGTACCGTTGCAGGCTCACTGGTCTCACTCACATCTGTGACAAGAACTGTAACCAGAGAATTTTGTACGACAACCATTCTTCCCTTTGCCGGGCTAGTCGCCAGATTTTCCCCCTTTCCCCAGCTGAGGAGCAGGCTGTCAGAGGAGTTCGCAGGAAGCTCGATGCTGAGAATAGCAGTGCTCCCACTGATAGCTGTTCTTTCAAGCGCAGGCGTGATGCACAGTTTCATCCTTCTCCTTTCGAGAGATCTTTCTCTGCTGTCAGTCCAATCTGCAGCCAAGTTGGAGATGGCATGGATATGAGCTAGATATAATATATCGTATACTTGAAATAACCCTTTCTCTTTCTATTCGTAATGTTCCTTTGAAGTTTTTCCTTTATATGTTTCATGAACGGATATGGATGACTTGGAACTTAATGTTGGGTAATTATTACGGTGGACCATAAGAGTCCTCCTCTATGAAGGAACGTTATATTTACTTTTCATGTGTAATGCAATTTATAGGGTCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73926106|gb|DT509416.1|DT509416 WS02423.BR_K20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02423_K20 TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GATTTTCTTGCTTTCTTTTAATTTTCGGTCTGCGTATTCTTATTCTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTAGGTGTGTGTGTGTGTGAGAGAGAGGGAGAGAGAGAGAGCGCGTGTGTTAGGTGTGAGCTAGGCTGTTTTGCAGGTGAGGAGTGGTAGCGTCGTCGATCGATCATTTCTTTTGGCCTCAGCTCTTCTTCTTCTTCGATCTCAACTGCTTGCTTCAGATCAGATCAGAACCCTTCCAAGCTGCCAATGGAGGTTTTTGGTAAATCCACGATGTCTGCTCCTGCCAATGTTGTTTATCTCTCCACTATCCTTGGCCTTGATTGCCCAATTCCTGTCCACAAATGTGACTGCAAGTGTCAGAATGAACATGTCTTTGGCAACATGTACCGTTGCAGGCTCACTGGTCTCACTCACATCTGTGACAAGAACTGTAACCAGAGAATTTTGTACGACAACCATTCTTCCCTTTGCCGGGCTAGTCGCCAGATTTTCCCCCTTTCCCCAGCTGAGGAGCAGGCTGTCAGAGGAGTTCGCAGGAAGCTCGATGCTGATAATAGCAGTGCTCCCACTGATAGCTGTTCTTTCAAGCGCAGGCGTGATGCACAGTTTCATCCTTCTCCTTTCGAGAGATCTTTCTCTGCTGTCATTCCAATCTGCAGCCAAG | |||||||||
gi|73937175|gb|DT520485.1|DT520485 WS02447.B21_K24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02447_K2 TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTTCTTTACTGATTGATTAAGCAAACCAGTAACTATACGCTTGGAGAACCGCGTTTTGCAGATTAAGGTGCCGTTTGGTAATGCGGCTGCACCCGAGGTTAAAGGAAGCCGCAGATATGTAGTGTTTGGTTATGCGAAAACCGTGTTTTATTTTGGTGGGACCCATCCATATTCGTGGCTGCACCTGTGGTTGAAGAAAAGTCGGGTCTGAGTGCTTTGCACCAGCAGCAACCTCAATTTTCAGATCCACCGACTACTGCTGAGAGAAAAAAAGTCGTTGGAGAATAAAAAATCACAGCATATACATTGCAATCGTTTCTTCCTTGTAGCTCCCTCCTCTCTCTCACAAAAAAATTTGAAGTTTGACTTGTTCCTGTGATTGGTCTCTCTCCTCTGTCAAAAATAGTTGCAGATTCTTTTTTCGACCCGTGATGCCTTTCCAAGCTCTTGATCTGTAGATCTGCTTAATAAAAAGGAATGGAAGGGCCTGAAATTTTGGATAAAGCTGCTTGGACTAAAGAAATGTTGCATGTCTTTTGCGACCTTTGCATCAAGGCCATCGACATGGGAATGAAACCGAATACGCATTTCGACAAAGCTGGTTGGAAATCTTTGTTGACAGCTTTCAAAGAACAAACAGGTCATGCATTCACCAAGACACAACTGAAAAACAAATGGGATGGTTGCAAAAAGGATTGGAGGATATGGACGAAGCTCATTTCCGAAACTGGTGTGGGATGGAGTAATGAATTAGGAACAATTTCTGCAAGTGATGAGTGGTGGAAAGCAAAAATTCAGGAAATAAGTGGAGCAAAAAAAAAAAAAAAAAA |