| mature miRNA: TGACAGAAGAGAGAGAGCACA species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270449237|gb|GT829571.1|GT829571 CCYO12200.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): TACATATGAGAGCTTTATCAAGATGCTTACAACATGACTAAGCAGTACCATGAATATTACATTAGAACAACTTGCACCAGCATTGGACTAATTTGGTTTTTAGTATAGCTGATATATACTGTTTCATTGGTAGATAGCAGCCCTGGCATCTGAAGTAGTAATTATTGTTTCTATTTACCAAAAGTTGACACAATAGTGGTCTGAACATCACAAATTTGAAGCTACAATCAATATTGATATTGTGGCTACACAGCTAGGTAACGCGTACAAAGTGTTTTTAGATTTAAATGTTTGTTCCATTTAACAAGATGATGTCAATGCAACACTCAAGATAATGCACAGACGACAGCTTAGGAACTCCCAAATTCACTTTGGGATGTCTAATGTCCAAACTCCTGAATAAAGAATAACAGAGTATTGAGTCTCATGCTCCAACCAATTAATCCCAAAGCTTAAGCTGATGAGGCAAGGTGGGCAATGTACTCATCCTTCAACCTGGAGGCTAGTTACATACTGCGTAAATGCTTGCCAGCAATATCTGCTCAATTGTTCTTGTCATGTATCTCAAATGCATATGAGCCACAAGATTTTTTTGTTCAGCGTTCTAGACATCTCTGCTACCAATATTTGGATGTTCTTGGGTGTCCATACATTGATGAGGGAATCCTTTGATGGACTGATTGATTGATTCTGCAGTCCCGATGCATCTTTAGCTGCTTCAAAATTAGATGGAGCACCGGATCTTCAGCATGCTCTCTCTCTTCTGTCAGCTAGTCTCGT | |||||||||
gi|270454112|gb|GT836523.1|GT836523 CCYO16856.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): GGCTTGATTCAGGTCAGGCAAGCTACAATTTGGCGAAAAGCGACTCCGTTTTCCTTTCAGCTCCCGGGTTGCTCGTGCTTGCTGGTGGGAGGGACGGTGACCTCAGCCTCGCCGGTACGGCAAAGCTCGCCGCCACGCCCCGCGGGCATTCATGGCGATGGAGCCTGGAGGAGAAGAGCTCACCCATCGTGACGTGGACATTCCCTCTGCGTTGATTTGTTTCATGTCATGCTCATGGCGGTGGCGACGGTCGCCAAGCTCTCAAAGTCACTGTCTTCTTCTTCTTCTTTCCTCATGCTCCATGGCATGCTCATGGCAGCACATGTTTCCTCTTTATCTCGGCTAGATCTGCAGGTCAAAAGTGAGCTGATTCGCTGAAGCCACAGCTTGATACTTGAATTCTGTTGAAGAGGTTGCTCATTATGCGCCACCCTGCAATTGTATGAGGGGACATTTAATTTAGACCCTGTAGAGCTCAGCCAGCCCAGTGCTTTTATGAGCAAAGCTGGCAATCCTCCTGTTGTACTACATGCAAGGCCACAGCTGCTCACATTCCATGTGCTTGTGCTCGTCCTCTTCTGCCACTAGTGGCATGTCAGCAATATGACAACTGCTATAGCCATTGAAGATGTCAGAAGAGAAGTGAGGATATTGAGTTCTCTGACAGGCCACAGCAACCTAGTACAGTTCTATGATGCTTTTGAAGATGAAGATAATGTGTATATAGTTATGGAGTTGTGTAAAGGAGGTGAGCTACTTGGATAAGATATTGGCGAGAGGTGGAAAGTATT | |||||||||
gi|270449348|gb|GT831337.1|GT831337 CCYO13579.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CTCCTTCGCACCTGCAAGGCTGCCATCAACGTTGATATTTGATGATAGACGACAAATAAGTTTTGTCTGGAATAAAGGTCCACCTAGCCATGTAAGGCCTTTCGCATGTTCTCCATGGGAAAGCCCATCTGAATTCAAGCTCTCACAAGTGAAGAACACGAGAGGAGTGTCAACCAATGGACAAGTTCATCTGGACAAATCTCATCTATCGAATGCTGTTCCAACACTGAGTCATGACATGGATGAGCTGTTCCCAGTAAAAGGTCCCGATGCATCTTTAGCTGCTTCAAAATTAGATGGAGCACCGGATCTTCAGCATGCTCTCTCTCTTCTGTCAGCTAGTTCTCGTGGATTACCTGATCCTGCACAGCAAGCATCTTGTCTTGTCCAATTCTCCGGTGCCAGCCAAAACAGCCGGGGCCTTCATTCATCACATGGAGTGAGCTCTGCGTCGGCACCCTGTGCTGAAGGACAGCCTATGGCGCCGTCGCCTCACCTCGTCCGTTTTACCGTGGATGGCACCAGCAGTGGCTATGACACCACATTCTTCGGTCTAAACAAGATAAATTAAGGCGTGAAATGTACCGGCCTTTTTGGCTATTTTGGATCAATAGCCAAGAGCTTTTGCAAGAACTGCTTCTCTCGACGTGTAAAATCTCACTGTTAATGTTACCTAGCTACATCAGCATTAATCTGTTTTTGTACAACCCTGCTGTCAACTGTTGGCTCTTCGAAACCATCGGATG | |||||||||
gi|270476031|gb|GT857583.1|GT857583 CCYP12188.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): GTTTGCCTCGTTCTATATGCATATGTCTTCCCCAAATTACCTATCGTGAAGTACTACCGGGCAAAGGCAGCCTCCGAAGGGAGCAAGACTGTTGGCAGTGACCTTGCTGCTGCAGGACTCAAAACTGATCAAGATAGACAAGTTGGGGAGGATCCGCAAAAGCACGAACGTTACAGCACCAAACAGCTGCTGATGCAGAACATAGACTACGCGCTTGATATTTTCCTGATATACATCTTGACCCTATCAATCTTCCCTGGATTCTTATCTGAAGACACTGGAACACACGGTCTGGAGACATGGTACGTGCTTGTGCTGATCGTGATGTACAATGGGTTAGATCTGATTGGTAGGTACGTGCCACTGATCAAGTGCCTGAAGCTCACCAACCGGAAGGGCCTGATGGCTGCGATCCTTGCGCGCTTCCTGTTCATCCCAGCGTTCTACTTCACCGCCAAGTACGGCGACCAAGGTTACATGATCTTCCTGACGTCTTTCCTGGGCCTGACCAACGGCTACCTCACCGTGTGCGTCCTCACCGATGCGCCCAGCGGATACAAGGGACCGGAGCAGAACGCTCTGGGGAACGTGCTTGTCGTCTGCCTCCTTGCCGGCATATTCTCCCGGTGTAGTGCTTGACTGGCTGTGGTTGATTGGCAAGGGCTGGTGATGAGCTTCGCTTTTCTGTTTTCTCCCTCTTCTGTCCTCTGTTTGGGTGTGTGGGAACCGTGCGATGTTGCAGAAACAA | |||||||||
gi|78004614|gb|DV473002.1|DV473002 5443_D02_H03Z_010 Brachypodium distachyon callus EST library Brachypodium distachyon cDNA clo TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGCCCACGCCACCAAGGAGCTGTGCTCTACCACTGCACCGGCCTCCTCCAAAGCCAGACCCCGCCGCGCCGCCAAGGAGCTGTCGCTGCACCGCCCTCTACCAACGCCGGACTCCGCCACGCCGCCAAGGAGCTGCTGCTGTACTGCCCTCCCCCAACGCCGGACTCCGCCGTGCCGCCAAGGAGCTGCCGCGGGTCTTCTCGGGCCTCGACGCTGCTGGATCCGGCCAGCGACTGCCCCGCCGCCGCGGATCCGGTCGGCCGCCGCCCCTTGCCCCGCAGGTTCGTCTCCTTCTCTCGGTTCCCTATCTCCCTCTCCGTTTCTCTCTCTTGCTCTCTCACTCTTGCAGGATGTCGGTGTCAAGGAGTAGGTGCTCTCTCTCTTCTCTCACTCATCTCCACCGGGGGGCGCCTCTCCCCTTCT | |||||||||