| mature miRNA: TGACAGAAGAGAGAGAGCACA species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9851022|gb|BE595949.1|BE595949 PI1_50_D04.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): AAATTTGATGGAGCACCGGATCTTCAGCGTGCTCTCTCTCTTCTGTCAGTTGGCGCTTGTGGATTGCCTGATCCTGTACATCAAACATCCTGCGTTATCCAATTCACTGGTGCCAGCGAGAACAGTGGTGACCTTCATTTATCACATGGGGGGAACTCTGGTCCAGCTTCATGCGCTGATGGACAGCATATAGCTGCTCAGTCTCAGTCTCAGCTGGTTCGTTTTACCATGGATACCAGCAACAATGTCTATGAGCCCAGTTTCTTCGGTGTAAACCAGATAAATTAAGCGTGAAAGATACACGCCAGTTGATCATTTGGATAAATAGCCATGAAGATGGCCTGGGCTTGTGCAGGAAGTTCTTCAACCAACCACCGGACATAAGGATCTCTCAGTTAATGTTATCTGCATATTTATCAGCTTATGTTTAATATGCAGTTCCAACCTGTGATTGACCCATTTTTTCTGTTGTTTTTTTTGCCCCCTGTGATGTGACGACTCTGGAACTTTCTAAGTGTGATACTATGTAGTTTTACACTTTTATTTTAC | |||||||||
gi|12691693|gb|BG158029.1|BG158029 EM1_7_E03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): GTTTTTTGTCTTTTTTCTCTTCTGTTGCTTTTTTCTCCGCCTTGAGGTGCACTTTCTTTTTTTTTTTTAAATCTTTTTTTCGCTCTTTTAAAAAAGAAGAAAAATTAAAGTGTTATCCAAGGCTGTCGTTCTTTTGTTTATACATTTTCTCGCCCAAGTACATACCATCCAGCAGATATATCCGCCGTCGCAAGTGCCCAGCGCTTAACAATTCATATCGCCAGCCGATCTCTCATATCGCTCCCTATTCGACGGACTTAACCTTGCGAGCTGTCTCTTTGATTGCTTGCCTTCGTTCCTTTTTACCTACTTATCGACGTTTATATCTGGAACTTCCCGGGGAAGTTTGATTTCACAGT | |||||||||
gi|14365557|gb|BG947368.1|BG947368 IP1_4_F05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CGCGGCCCCGCCGCCCGAGAGCAGCAGCAGCAACAAGATGTTCTCCGACGGGCTCACCCCCGTGCTCGACTCAGATTGTGCTCTCTCTCTTCTGTCATCCCCCGCCAACTCCTCCAGCGTCGACGTGAGCCGGATGGTCGTCCAGCCCGCGGCGGAGCACATCCCCATGGCGCAGCCCCTCGTCCCCAGCAGCAGCCTCCAGCACCACCACCAGCACCACCAGTTCGGCAGCTCCCCGGGCGGCTGGTTCGCCTGCTCCCAGGCCGGCTCCAGCGCCGTCTCCGGCGCGGGCACCGGCACCGGCGGCTTCGCCTGCCCCGCCAGCGTGGAGAGCGAGCAGCTCAACACCGTCCTGGTGCCCAGCAACGACGCCGGCCACGAGATGAACTACCACGGCATCTTCCACGTCGGCGGCGAGGGATCCTCCGACGGGACGTCCCCTTCGCTCCCGTTCTCGTGGCAGTAGCTTCTTCCGTCCGGTTCAAGCGACCAGTAGTGATCGGTGTTCAGCTGTAGTGATCCTGTTCTTTCTGTGTTTATTTATTATTATTATTCTCCCTGTCATTTGCTCGTTTCTTCGTTTTGCATGCCTGATGCATGCAGCCTGAAAAAACTCGCATAAAATTAGTGCCGAATTTCTCCTGAAACCGTTCTGATATCTTACTGATTC | |||||||||
gi|7553383|gb|AW679616.1|AW679616 WS1_2_B01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): AGTCATGGCAAAGATGAGCCTTGGCCAATGAAAGGTCCGGACATGTCTATAACTGCTTCAAAATTTGATGGAGCACCGGATCTTCAGCGTGCTCTCTCTCTTCTGTCAGTTGGCGCTTGTGGATTGCCTGATCCTGTACATCAAACATCCTGCGTTATCCAATTCACTGGTGCCAGCGAGAACAGTGGTGACCTTCATTTATCACATGGGGGGAACTCTGGTCCAGCTTCATGCGCTGATGGACAGCATATAGCTGCTCAGTCTCAGTCTCAGCTGGTTCGTTTTACCATGGATACCAGCAACAATGTCTATGAGCCCAGTTTCTTCGGTGTAAACCAGATAAATTAAGCGTGAAAGATACACGCCAGTTGATCATTTGGATAAATAGCCATGAAGATGGCCTGGGCTTGTGCAGGAAGTTCTTCAACCAACCACCGGACATAAGGATCTCTCAGTTAATGTTATCTGCATATTTATCAGCTTATGTTTAATATGCAGTTCCAACCTGTGATTGACCCATTTTTTCTGTTGTTTTTTTTGCCCCCTGTGATGTGACGACTCTGGAACTTTCTAAGTGTGATACTATGTAGTTTTACACTTTTATTTTACTGCCCTGATGATGATGATGATGATGATGTCAACGGTTGGATATCTTTAAACTGTCCTTGATGAATCTGGACATGTTTTTTT | |||||||||
gi|45974792|gb|CN139505.1|CN139505 OX1_22_B01.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_22_B0 TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): ACAGGCCCCCTCGGTGACAGCGTGCTGCTCTTTGTCGCCCTCTGCTTCCACTCCGTCTTCGAGGGCATCGCCTTCGGGGTCGCCGGTAAGGCTAAGCCAGACAGAGATAGGGGATATACGGATGCTTTGTTCCCTTCCAACTTGCTTATGATGCCTTGAAATTTCTTTACTTGTATTCCGGGACTATCAGCAGACGTCACCGTCATGTCACGGACTAGTTTAGTCTGACTGAGCAGATGATTAGATGCCCAACTTTAGGTATAAATGAGATGCGACGTATGACACAGATACCTGCAAGGAAGGATGGACTCAATCTGAAGTCTCAACTGAACACCGGTTACGTTACTTCTTAGCCTGATTCTAGTGATAGATGTGATGGTTTTGTTGTGACTAACACCAAGTGGAATGTGTCCTTGCTCTTTTGTCAAATTTGCGCTAGTGTCTCGCTGTTCGGTCAGAGCGAAAGGAGCCTACAGATTCAGCACAGCCAGAGCAATACAGATCGTTCTTCCAAACCAACCGTCTTTGCTGACCTTTCCTGAGACCAAGGCTGACGCATGGAAGGCGCTGTGGACCATCAGCCTGCACAAGATCTTCGCGGCCATCGCCATGGGCATCGCGCTGCTCCGGATGCTCCCCAACCGGCCCCTCCTCTCCTGCTTCGCCTACGCCTTCGCGTTCGCCATCTCCAGCCCCATCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGACTGGATCTTCGCCGTCTCCATGGGCCTCGCCACGGGCGTCTTCGTCTACGTCTCCCTCAGCCACCTCCTC | |||||||||
gi|7660905|gb|AW747167.1|AW747167 WS1_66_F11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CACGGGGTGGAGGCGGGCAACAATCCCGCGGAGCTGGCGGCGGCCGTGGGTGGCGCCTCCAGCAGCTCCTCCCGGGCGGCGGCGAGGAGCAGGGTCGCGGCGGCTGCTGGCGCCTCCGGCTCCTCCCCGGTGGCGGCGGCGAGGAGCAGGGGCGCCGGCGCCGTGGCCGCGGCGGCGGGCGGCGGCGGTGGCGTCGGGCCGAGCTGCCAGGTGGAGCGGTGCAACGCCGACATGGGCGTGGAGAAGCGGTACAACCGGAGGCACAAGGTGTGCGACGCGCACCGCAAGGCGTCCGTCGTCCTCCTCGCCGGCCTCCGCCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCACGAGCTGTCGCACTTCGACGACACCAAGCGGAGCTGCCGCCTGCGCCTGGCGGGGCACAACGAGCGGCGCCGGAGGAACCCGGCGGAGGCGCACGACCAGAACGGCGGCCGGGGCGACCCGGGGAACCACCACCTCCACATCAGATCAGATAAACCTATCTAAGCATGCTCTCTCTCTTCTGTCATGCAGGATGCACCTAGCATCACCGATCGATAATCCGATTTGTGTCTCAGTGCCTACCCTGTCCTGTGTCTGTGTGTTGCGTATGGTACGTGCTGCTGCTACTACGTGCTAACTT | |||||||||
gi|14365556|gb|BG947367.1|BG947367 IP1_4_F04.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CTCACCCCCGTGCTCGACTCAGATTGTGCTCTCTCTCTTCTGTCATCCCCCGCCAACTCCTCCAGCGTCGACGTGAGCCGGATGGTCGTCCAGCCCGCGGCGGAGCACATCCCCATGGCGCAGCCCCTCGTCCCCAGCAGCAGCCTCCAGCACCACCACCAGCACCACCAGTTCGGCAGCTCCCCGGGCGGCTGGTTCGCCTGCTCCCAGGCCGGCTCCAGCGCCGTCTCCGGCGCGGGCACCGGCACCGGCGGCTTCGCCTGCCCCGCCAGCGTGGAGAGCGAGCAGCTCAACACCGTCCTGGTGCCCAGCAACGACGCCGGCCACGAGATGAACTACCACGGCATCTTCCACGTCGGCGGCGAGGGATCCTCCGACGGGACGTCCCCTTCGCTCCCGTTCTCGTGGCAGTAGCTTCTTCCGTCCGGTTCAAGCGACCAGTAGTGATCGGTGTTCAGCTGTAGTGATCCTGTTCTTTCTGTGTTTATTTATTATTATTATTCTCCCTGTCATTTGCTCGTTTCTTCGTTTTGCATGCCTGATGCATGCAGCCTGAAAAAACTCGCATAAAATTAGTGCCGAATTTCTCCTGAAACCGTTCTGATATCTTACTGATTC | |||||||||