| mature miRNA: TGACAGAAGAGAGAGAGCACA species: Theobroma cacao database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|38499723|gb|CF973963.1|CF973963 PSU_me9.3B03 Defense-related ESTs from Cacao Leaves Theobroma cacao cDNA, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CCATCACGGGACCCTCAGGCTGTGGCAAGTCCACCCTTCTTGATGCATTGGCAGGAAGACTAAGTTCGAATACACGACAGACTGGGGAGATCTTAATTAATGGTCGAAAGGAACCACTTGCCTTTGGAACTTCGGCTTACGTGACTCAAGATGATACTCTAATGACAACACTCACAGTAAGGGAAGCTATTTACTACTCGGCACAGCTTCAATTACCTGACTCCATGTCAAAATCTGAAAAGAAGGAAAGAGCTGAGATGACAATTAGGGAAATGGGGTTGCAAGATTCCATGGATACAAGAATCGGAGGGTGGAGCACAAAAGGACTTAGCGGTGGACAAAAGAGGAGAGTTAGCATTTGCATTGAGATCTTAACAAGGCCAAAGCTTCTCTTCCTTGATGAGCCTACTAGTGGACTAGACAGTGCAGCATCCTACCATGTCATGAGTCGCATTGTCAAGCTAGCCCGCCGAGATGGAAGGACTGTAATTGCATCGATTCATCAACCTAGCAGTGAAGTTTTTCAGCTCTTCCACGATCTCTGCCTTCTCTCTTCTGGCAAAACTGTCTATTTTGGCCCTATTTCAATGGNAGAGCAGGNTTAATTCCTTTCCAAGGTGC | |||||||||
gi|38499079|gb|CF973319.1|CF973319 PSU_bithreeD03 Defense-related ESTs from Cacao Leaves Theobroma cacao cDNA, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CGCCGCCATAAGGTCTGTGAGTTCCATGCCAAGGCTCCGGTGNNTCGAGTCTCTGGACTCCAGCAACGCTTCTGCCAGCAATGTAGCAGGTTTCATGAATTATCGGAGTTCGATGAAGCAAAAAGGAGCTGTAGAAGGCGTTTAGCTGGACATAACGAACGGCGCAGGAAAAGCTCATCTGAATATCATGGAGAAGGCTCAAACTATTAACTAGAGGCAAGCTTAAAAAGAGTCGAGTTAACTTAACTCTCTTCCAATTATCCCCATATATACAAGGCCCTTTCCAATGCTCAATTTAGATGNAACTATATGATTTCTAAGCATGCTCTCTCTCTTCTGNCAATCTTAANTT | |||||||||
gi|212120534|gb|CU492916.1|CU492916 CU492916 FLOWERS_KZ0AAD Theobroma cacao cDNA clone KZ0AAD11YE24FM1, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CGGGATTCCAGGACACCTCATTAGGAAGTGAAGACATCAATGTTTTTGATGCTGCATCAACCATTCAAGGACTATCTGGGATTTCAGATTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAGAACTCTTCAAGCCATTCATCAGGAATTCCCATGTCCCGTTCCCTTGTCATTCCAGGCAGCCATACCCATTACAACATGAGTCAAGTCTCAGGAAAGCTCATCGGAGTTAGCTCGCAGACTTCAACTACTGGGGTTTCAAATAAGTTCTCTTCATCAGGGATGAATTCAACTGAAGGGAGTCACCTGGGACCCCTACTGATATCTGATGGTAGTGAATCTGCCAACTTTGATATCTCTGGTGGGATTTACCAAGATTCGGAATTCATGAATACCAAGGATCGCCTATCATGCGAAGATGGACCAACAATTGACTTGCTTCAGCTTTCATCACAGCTTCAGCGAGTGGAGCATCAAAGACAATCGATGCAGGTGAAGCAGGAAAATGAGGCTTTCTGCTGCCTCCGAATCACTTAAGTACATGAAAAATAAGGACCAAACACTGTGCTATGGGAGAGGAGTGCAATGTGCTAAAAGGTGTGCAGTTCTGGAGACATCTATACTTGATCTCGGAGTAACATAAAAGCATTAGGGAGAGAAAATGATGAGAAAGTTCAGATGCTAATCTAAACTTCTCAGCAGCTGCTAACAGCTTGATTTTTTTTTTTTTATTTAAT | |||||||||
gi|211990001|gb|CU503920.1|CU503920 CU503920 OVUL1_7M_KZ0ACAK Theobroma cacao cDNA clone KZ0ACAK5YP23FM1, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): ATACGCGGGCCAGGTACCCAGATGTCGCCCTTCTCTAATTTGCAAGTATATCCCTCCACCACTGTGGTGAAACCTACTTGGCCTGGAGTTACCAATTCTGAGACAGATTCTAGGCATCTTAACCAGCAGCAACAGTTACACTCACCAGAGAAACGAAATCTTGTTCTTGGATCCTCTTCGAGCAACTACAGAGGAGGGAAGCAATTCATGTTCTTGCAAGGTGAAAATAACACTCCCCAGAATCAAACACTTCCAGAAGCTTCTGTCTGCCAGCCGCTTCTCAGGGCTACGCCTTTCTCAGAAGGCAGTGGGGGCAGCCACACTATGTTCTGTGACAGGTCAACAACTCCAGTTCAAGATTCAGATTGTGCTCTCTCTCTTCTGTCATCTCCGCAGACACAGACATCTGGGATCAGTTTGAGTAGCATGGTGCAGCCTCGCTCATTTCCCTTGGTGCAGCCCTTAGGTCCAAGCCTACAGAACCACATTATAGAGCCCATGGATTCAGTTGTTGTTGCCAATGGCAGGGACACGGCGGTCCATTGCCCAGGAATGTTTCACATGGGTTCTGGTGGATCCTCTGGCAATGAAGCCCCTCAAACTCTTCCCTTTCATTGGCA | |||||||||
gi|212154486|gb|CU503758.1|CU503758 CU503758 OVUL1_7M_KZ0ACAK Theobroma cacao cDNA clone KZ0ACAK5YG14FM1, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CGGGGATCAAAGAGCCAGAGTTCCAATAGCAATCCCAGGCAATTCATCTTTTAAGCGTTCCCAAAACAGATAAGGAGCTTAATGACCAAAACATCAGCAGCATGCTCCCTCTCTTCTGTCAGCCAATGGTTTATGCATTTCACTATGTACTGGTACTTACTATACTACGTTGGAGGATTCAATAACTATATCAGGCATAGAAATTTAAGTCTAGTATCAGTGCTTCTGAAGCCTGTGTTCTCGTGTCTTGCCTGCCGCGTAATCTAGGCTTTCTGTACTGATAACCCTTTATCTATGGAGTCTTCTATTGTATCAAAAAAAAAAAAAAA | |||||||||
gi|212317066|gb|CU530857.1|CU530857 CU530857 TEGPULI_KZ0AAI_K Theobroma cacao cDNA clone KZ0AAK10YO12FM1, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CGGGGACAGCATTAACTCAGAAGTTCTAGATTTTCAAATCTTCAAAGTTTCTTGTTTTTTGTTTTTTCTCTTCTGTCCCCAAAAGAAAAAATTTTCCCAACTTCAAAGGCCGATCAGAAGAGACCACCCCAAAGAAATGAAGGAGCCAGAAAAGAGCTTGGATCCACAGCTATGGCATGCTTGTGCTGGATCCATGGTTCAAATCCCACCAGTGAACTCCAAAGTCTTCTACTTTCCTCAAGGCCATGCTGAGCACTCTCTCTCCTCGGTGGATTTCTCGTCTTCTCCTCAAATACCGGCTTTTGTTATCTGCCGGGTGGCTTCTGTCAAATTCTTGGCTGATACTGAAACTGATGAAGTTTATGCCAAGATCATGCTTATACCATTGTCAAACAGTGAGCTTGATCTTGAGGAGGATGCCGTTTTAGGTGGTGGCTCTAATGGGTCTGATAATGTCGAAAAGCCTGCTTCTTTTGCTAAGACATTGACTCAGTCTGATGCAAACAATGGGGGTGGTTTTTCTGTTCCAAGATATTGTGCTGAAACCATTTTTCCAAGATTGGATTACACTGCGGATCCTCCTGTTCAAACTGTTATAGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATCTATAGGGGGACTCCTAGGAGACATCTGTTGACTACCGGCTGGAGTACTTTTGTAAACCAGAAAAAACTTGTTGCTGGGGACTCAATTGTGTTCTTGAGAGCCGAAAATGGTGATCTTTGTGTTGGTATTA | |||||||||
gi|213641468|gb|CU625431.1|CU625431 CU625431 LEAVES_KZ0ABE Theobroma cacao cDNA clone KZ0ABE4YP01FM1, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTCTTTTTTCACGTTTCTCAAAATCCCTGTCAATGCTTCATGTTATTATTTTTTTATTTTTAAGTTTAAACAAAGAGGATACCCTCCCTCTAGGGAAAAAGAAATGCCTTCTGCCAGTGATGAGGATGCCGTTGCAGATATAATGGAGCAACATGATCAATTCATTAGTTCCATGCAGTCTCGAATAGCTAAGTTACAGGTTGTTCATCGATACTGGGAAAGGACTGACATAAAGGGGGCAATCAGTGCAATGGAAAAGATGGCTGATTATGCTGTGGTTGCTGATGTGATGACCATTAGCACGGAGAAAATGGACATTGTCACGTTGGACATTTGCACTTGTCTTCTCCCTCTTCTGTCTGGCCTCCTTGGAAGTGACATGGATAGGTAAAAACAGTGTCAAAATCTTG | |||||||||
gi|223631427|gb|ES440539.1|ES440539 EST00757 Theobroma cacao-Moniliophthora perniciosa compatible interaction library Theobroma TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): GAGGACTTGGCAATTATACGCTGCTTGGCTTATATGCTACGGCGTTTCTCTTTATCTCTGTTTCTCTCTTCTGTCAGTTTCTCTTCTCCAGCTAATTTCCTCCCCTCTCTGTTTTTTTTTTTTTTCTAAATCAAAGTTCGTTTCATTAATTAGAACAAAAGAGCAAAAGAGTCTTCCACCTATGGAAAACGCCTTCCAGCATACAAAAGAGATAAGAACGCTGGGACAGAACCCCTCCTCTCTCTGTTTCTTATCTGAATTTGATGTTTTTCTCTGTTTCTTATTGCGATCAGAGTAAGAGCGGGAGAGCCCGATTCTCACACGCAATTGACAATCCAATGGATGCCCAGAATTGCGATCAACAAGGCTGCTTCCAAATTACTTGTAA | |||||||||
gi|211980420|gb|CU539242.1|CU539242 CU539242 CORTINS_KZ0AAV Theobroma cacao cDNA clone KZ0AAV10YG14FM1, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): GGGGATTCTTCTTCTTTGTTGTCTGAAACCTCTCCATCTCATCCATCTTCTCTTTGTTTTCCCAAAACCGAAATGGCAACAAGCAGAGCTGAAGGGAAGAGGAGCCTGAAGGAAATGGCTGAGGATGAGGAAGAGGAGGAGGACGAAGATGCTGGTGCTCTAGGGTTTGTAGATGAAGAAAAGAAGAAGAAAGGAAAGAGAGGATCCAGTACTGGTGGAGGGTCAGCACTGCCTTCTTGTCAGGTTGAGAACTGCACTACTGACATGAACGATGCGAAGAGGTACCACCGCCGCCATAAGGTCTGTGAGTTCCATGCCAAGGCTCCGGTGGTTCGAGTCTCTGGACTCCAGCAACGCTTCTGCCAGCAATGTAGCAGGTTATTGTTTCATGAATTATCGGAGTTCGATGAAGCAAAAAGGAGCTGTCGAAGGCGTTTGGCTGGACATAACGAACGGCGCAGGAAAAGCTCATCTGAATATCATGGAGAAGGCTCAAACTATTAACTAGAGGCAAGCTTAAAAAGAGTCGAGTTAACTTAACTCTTCCAATTATCCCCATATATACAAGGCCCTTTCCAATGCTCAATTTAGATGTAACTATATGATTTCTAAGCATGCTCTCTCTCTTCTGTCAATCTTAATTTACCCTTTAGCTATACACCGTTTCATGCTCTACCTATTGTTATATCTGCAT | |||||||||
gi|212163346|gb|CU521154.1|CU521154 CU521154 SEEDNAB_KZ0ABH Theobroma cacao cDNA clone KZ0ABH2YI15FM1, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CGGGGGAACAAACCATGAAGACCGCTGCTTGAGTTTGAAGCGTTGGTTGCTCCGAACCAAAGTAAAGATGCTTAGAAAACCTATCTCAAATCTCAACTACTCTCTGTCTCAGGCCTAAAACAACAAAGAAAAATCCTTCTTTTCCTTTCTCTCTTCTCTCAGTTTTCGTGTTAAAACCCAAAACCTTTCCCCCCCTAAAAAAAAAAAAACAAA | |||||||||
gi|212158174|gb|CU517202.1|CU517202 CU517202 SEEDNAB_KZ0ABH Theobroma cacao cDNA clone KZ0ABH10YK02FM1, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CGGGGAGGACTTGGCAATTATACGCTGCTTGGCTTATAGGCTACGGCGTTTCTCTTTATCTCTGTTTCTCTCTTCTGTCAGTTTTCTCTTCTCCAGCTAATTTCCTCCTCTCTCTGTTTTTTTTTTTTTCTAAATCAAAGTTCGTTTCATTAATTAGAACAAAAGAGCAAAAGAGTCTTCCACCTATGGAAAACGCCTTCCAGCATACAAAAGAGATAAGAACGCTGGGAAGAACCCCTCCTCTCTCTGTTTCTTATCTGAATTTGATGTTTTTCTCTGTTTCTTATTGCGATCAGAGTAAGAGCGGGAGAGCCCGATTCTCACACGCAATTGACAATCCAATGGATGCCCAGATTGCGATCAACAAGGCTGCTTCCAAATTACTTGTAATCTTTGTTTATCCTCTTGCACT | |||||||||
gi|213638262|gb|CU623651.1|CU623651 CU623651 LEAVES_KZ0ABE Theobroma cacao cDNA clone KZ0ABE11YL15FM1, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CTGAAGGGAAGAGGAGCCTGAAGGAAATGGCTGAGGATGAGGAAGAGGAGGAGGACGAAGATGCTGGTGCTCTAGGGTTTGTAGATGAAGAAAAGAAGAAGAAAGGAAAGAGAGGATCCAGTACTGGTGGAGGGTCAGCACTGCCTTCTTGTCAGGTTGAGAACTGCACTACTGACATGAACGATGCGAAGAGGTACCACCGCCGCCATAAGGTCTGTGAGTTCCATGCCAAGGCTCCGGTGGTTCGAGTCTCTGGACTCCAGCAACGCTTCTGCCAGCAATGTAGCAGGTTTCATGAATTATCGGAGTTCGATGAAGCAAAAAGGAGCTGTCGAAGGCGTTTGGCTGGACATAACGAACGGCGCAGGAAAAGCTCATCTGAATATCATGGAGAAGGCTCAAACTATTAACTAGAGGCAAGCTTAAAAAGAGTCGAGTTAACTTAACTCTTCCAATTATCCCCATATATACAAGGCCCTTTCCAATGCTCAATTTAGATGTAACTATATGATTTCTAAGCATGCTCTCTCTCTTCTGTCAATCTTAATTTACCCTTTAGCTATACACTGTTTCATGCTCTACCTATTGTTATATCTGCATGAACATTAATCGATCTTTATCTACATAGCCTTTACAAAAAAAAAAAAAAA | |||||||||
gi|296178827|gb|FC072121.1|FC072121 EST00129 Theobroma cacao-Moniliophthora perniciosa pods incompatible interaction library The TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): GGGTGTTGCTGGTCTTGAGCAAAGGTTTTGTCAGCAGTGTAGCAGATTTCATCAGCTTCCTGAGTTTGACCAAGGGAAACGGAGTTGCCGTAGACGGCTTGCAGGTCACAACGAGCGACGGAGGGAGCCTCCACCTGGATCATTATTACCCTCTCGTTATGGCAGACTCTCTTCATCGATTGTTGAAAGCAGTAGAGGTGGAAGCTTTATCATGGATTTCACAGCTTACCCAAGGCTTTCTGGAAGGGATGCGTGGCCAACAGCAAGATCATCAGAGCGTGTACCTGGTAATCAAAACACGGCCACAGGGAGGTCACTTCCACATCCATGGCAAAACAACTCAGAGAATCCTCCGCCTGACCTTTTTCTGCAAGGTTCACCGGGTGGGACTGGTTTGTCCAGTGCTGGAATTCCCTCGGGAGAATGCTTCACGGGAGTTGCTGACTCAAGCTGTGCTCTCTCTCTTCAGTCAAATCAACCATGGGGCTCTAGAAATCGGGCTTCAAGTCTAAGGGTAAACGACATGAT | |||||||||