miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGACAGAAGAGAGAGAGCAGA
species: Arachis duranensis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|296570322|gb|GW956056.1|GW956056 Dur25.seed.ADAA-aac02g04.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAGA
 || ||||||||.|||| |||
TCTCTCTTCTCTTTCTCCTCT

EST sequence (targeted fragment marked with yellow):
AGTGATATTTAGTATCAGCAATCAATTTTTCGGATAATTGTTTCTTTTTTTCTTCGGTTTTTCTGATTGGCAATCAATTTCAAACCTATAGCAGAGAAAAAGCATCAAAGGAATAGAGACTCATTTGATTCTTTTTGGGGAGATGGAAGCTGATGTATCTATTTTTTTTGCTGTGTTTCCAAAACCCTAAATAGAAAAAGAAAATCCCCAAATTTCTTCCATCGCTTTCTGATTTGCATGATTTTCAACCAAAAGCTTTGCCCTTTTGTTCTTTTTAAATCTTTTGTACTGATGGGTACCTCGAATCTTCTCCTCTTTCTCTTCTCTCTGCTGGGTTTGTGTGCTTTGTCAGCTACCAAAGTGGTGCTGATTGGGAACAACATCACTCTCTCCTTCGATGATATCGAAGCTAATTTCGCTCCGACGATCAAAGGGTCTGGAGAGTGTGGGGTCTTATATT


gi|296574573|gb|GW948470.1|GW948470 Dur25.seed.ADAA-aab12a10.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAGA
|| |||||||||.|||.||.
ACGGTCTTCTCTTTCTTGTTC

EST sequence (targeted fragment marked with yellow):
CTTGAATTCTTGACTCACACAACAACAAGAAGGTTGGATTTCTCCTTCAATGGCTGATTTGGGTGTCATCAATAACAAGAAGCAGATGAAGAAGAAGAAGAAGCAGCAAGTAGGTCAGGATCATGTGTTCCCTTCTTCTTGTTCTTTCTCTTCTGGCATAAAATTCCTTCCGAATGAGTTGTTGGTGGAGATTTTCGGGAAGGTGGCATCACAATCCATTGTTGATCTGTGCAAGGTGAAACTGAGTTGCAAGGAATTTCTGAAGGCGGCGGAGAACGATCACGTGTATCAGCGTGCATCCATGGAGAACTTTTCCCTGGTGCCACTTCCATGGTTCACCGAGCAGAAAGAATGTTGGTTCTTGAAGCGGTGTAGAGAAAGTGGGAATTTGGAGATTGCATATCGTGAAGGAATGGTGGAATATTTCAGTTCCGGCGACGTTGATCGGGGTCTCGAGAAATTGAAGAAGGCTGCAATGAACGGCCACGATGAAGGGAAGTATGTTTATTCAATGATTCTGATGTGCAGCGATAAAGAGAGAAAACAGGGACTTGAACTGTTTCTTACGTTGAATGCGTCAACGTGCATAAGAAGGTGTAGAAAGAGGGTTAAGTATTTTGTTA


gi|296559907|gb|GW939428.1|GW939428 Dur25.seed.ADAA-aaa01g06.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAGA
|||||.||||||||.|| |||
ACTGTTTTCTCTCTTTCATCT

EST sequence (targeted fragment marked with yellow):
TATATGATTTTGTGCTTAAATGTTTCTTTTCTATAAAAAACCCCAGCCCCTTCTGCAATCTGCATACTGATATCAATTTCAAGGAAGAGATTTAACCTCAATCTCTCATATTACTCTCATCCACTTTCTACTTTCTCTCTTTTGTCA


gi|296552467|gb|GW934667.1|GW934667 Dur25.root.ADAA-aaf50c10.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAGA
||||||||||||||||||| |
ACTGTCTTCTCTCTCTCGTGT

EST sequence (targeted fragment marked with yellow):
TCATATAATGAGAAGCAATTTCCCTTTCTTCATGAAAATAATGATGCTACATCTGCTGGGGGTAGCATCTTCTGTGAAAATAATAGCTCATATCCACCTGCCATAGGAGGGCCGAACTCGGGGTCACAATCATTATTCCAGGACACGTCCATAGGAGGTGAGGACTTCAATGTTTTCGATACAGAATCGGCTGTTCAAGGACTATCGGGAATTTCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAACTCTTCAAGCCAGTCATCTGGAATTCCCATGGCTCGCTCAATGGTCATTCGGAGCAGCCATAGCAGTAGCCATTATGCCATGAGCCAGGTCTCTGAAAAGATGATAGGAATAACTTCGCAAGCTTCGAGTGGAGTCTCCGATAGGTTTCCATCTGAGTTGAATCCTGCAGATGGAAGTCCTCTTAGCTCTGTGCTGATATCTGACACCAATGACATTGTCAACTTTGAAATGGCAGATGGAATATTCCATGGTTCAGATTTTGTGAATGTGAAAGATCGTCTCTCATGTGATGATGTCCCGACTATCGACTTGCTCCAACTGTCTTCGCAGCTTCAGCGAGTTGAGAGTGAGAGACAATCCTTGCAGGTAAAGCAAGAAAATGATTCATCAGTCTCTCTCCGGATTACT


gi|296563857|gb|GW944713.1|GW944713 Dur25.seed.ADAA-aaa67g11.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAGA
|| |||||||||.|||.||.
ACGGTCTTCTCTTTCTTGTTC

EST sequence (targeted fragment marked with yellow):
ACTCACACCACAACATAGAAGGTTGGATTTCTCCTTCAATGGCTGATTTGGGTGTCATCGATAACAAGACGCAGATGATGAACAAGAATAAGCAGCAAGTAGGTCAGGATCATGTGTTCCCTTCTTCTTGTTCTTTCTCTTCTGGCATACAATTCCTTCCGAATGAGTTGTTGGTGGAGATTTTCGGGAAGGTGGCATCACAATCCATTGTTGATCTGT


gi|296552509|gb|GW934709.1|GW934709 Dur25.root.ADAA-aaf50h10.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAGA
||||||||.||||||||||
ACTGTCTTTTCTCTCTCGTAG

EST sequence (targeted fragment marked with yellow):
ATTCATATTTCCCTGTGGTTCTTTGCTTGGTGCTTCTGCGACTAAGCTCGCTCCCCTTTTGGGAAATAATAATAATAAGAAGAATAATTAGGGTTTCGTGGTTCTCAGCTCGCGCACCCAGTCATGGGAGGAGGCAATGGGCAAAAGGCAAAGATGGCTCGTGAGAAGAACCTCGAGAAGCAGAAGGCCGCAAAAGGAAGCCAGCTGGATTCAAACAAGAAAACTATGTCGATCCAGTGCAAGGTATGCATGCAGACATTTATGTGCACCACATCAGAAGTGAAGTGCAGGGAGCATGCCGAAGCCAAACACCCTAAATCTGATGTTTATGTTTGTTTTCCTCACCTTAAAAACTAAAAAGTGAACATATTGGGGAGCACAAGTGGAGAGAACTTAATATCATCATGGCCTCTTTCCATTAATCCATTCACAGAGATCCTCCTCATATATATGTTGGCTGTGTCTGTGTGTTGTGTGGAGAGACAAGAAGGGGAGGGAGAACATTTAATATGATTTTCCCAAATTTTGGGAAAGAAACTTGTGATGCTCTCTCTTTTCTGTCACTGCAATGTTTAACGATAATTATTGTTAATATTAAGTGTCTCTTGCAG


gi|296562958|gb|GW947374.1|GW947374 Dur25.seed.ADAA-aaa99b02.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAGA
||| ||||||||| ||| |.|
ACTCTCTTCTCTCACTCTTTT

EST sequence (targeted fragment marked with yellow):
GCGACCTACTTCATCACACTTTTCTCACTCTCTTCTCTCACTCGCTAACACTCATATTATGGCGGAGGACAAGCACAGCACCAACTCCAACGCTAATGGCGTCTACGTTGAGGTCACCGGAGAAGAAGAATCTAATAATAATAAACGAGAAAGCGAGAGCACCATCGCCTTATACCAAGTTCTTAACCGCCTCGCTTACGCTATTCTCTTCCCGGAGCCTTCTACCAGCGCCTCCCTGCTTAAACGGATCAAGATCTCCCTCGCCGAAAACGCTCCGCTCCTTCCAGAAGCTTCTAGAAAATCCGCCCTCGACCTTCTCCTCTGGACTCGCCAAGGCAACCCCTTCCGCGCCATCTTAGTCATCACCGTTGGGACAATTACTTCTGTTGCGCTCACAGGACTGCTTGTCTTCTTACTTTTCTTTCTTGCTGCCACCATAAACGCTGTTGTCATATCACTTCTTGTGTCTTTGGCAGCAGCTGGAGGATTCTTGGCTATTTTCTTTGCCTGTGTTGCAGCTGTATATGTTGGGGCACTATTAGTAGCTGCG


gi|296570293|gb|GW956027.1|GW956027 Dur25.seed.ADAA-aac02d08.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAGA
||||||||.||||||||||
ACTGTCTTTTCTCTCTCGTAG

EST sequence (targeted fragment marked with yellow):
TCGCCATTCATATTTCCCTGTGGTTCTTTGCTTGGTGCTTCCGCGACTAAGCTCGCTCCCCTTTTGGGAAATAATAATAATAAGAAGAATAATTAGGGTTTCGTGGTTCTCAGCTCGCGCACCCAGTCATGGGAGGAGGCAATGGGCAAAAGGCAAAGATGGCTCGTGAGAAGAACCTCGAGAAGCAGAAGGCCGCAAAAGGAAGCCAGCTGGATTCAAACAAGAAAGCTATGTCGATCCAGTGCAAGGTATGCATGCAGACATTTATGTGCACCACATCAGAAGTGAAGTGCAGGGAGCATGCCGAAGCCAAACACCCTAAATCTGATGTTTATGTTTGTTTTCCTCACCTTAAAAACTAAAAAGTGAACATATTGGGGAGCACAAGTGGAGAGAACTTAATATCATCATGGCCTCTTTCCATTAATCCATTCACAGAGATCCTCCTCATATATATGTTGGCTGTGTCTGTGTGTTGTGTGGAGAGACAAGAAGGGGAGGGAGAACATTTAATATGATTTTCCCAAATTTTGGGAAAGAAACTTGTGATGCTCTCTCTTTTCTGTCACTGTAATGTTTAACGATAATTATTGTTAATATTAAGTGTCTCTTGCAG


gi|296564136|gb|GW941477.1|GW941477 Dur25.seed.ADAA-aaa29a07.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAGA
 || ||||||||||||. |||
TCTCTCTTCTCTCTCTTCTCT

EST sequence (targeted fragment marked with yellow):
AAATATTGGTTCACCATGAACAAAAGCTTTCACAAATATTTTCTATCAAAAAAGAAATCATCATAGAATAAGTGAGCCTATATCCATGACAAGCCTAATAGGTGGTCCATAACCCAAATTCACTCTCCTAAATTTGATTTTCATTTCATTTGAATTCATTTCATTCGAACACTATCATCCACCGAATTAAAATTCTCTCTTCTCTCTCTTCTCTCTCTTCTCATTCTTTCAAACCACATCACTCTAAAATAAGAGAGAAAGACTAAAAAATTCTGGAGTTAGAACACTGTAAAGAACAAAAAATTAGTTTTCATTCTCATGTAAGAAGAGAAAGAAAA


gi|296546080|gb|GW928676.1|GW928676 Dur25.root.ADAA-aae51g12.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAGA
||| ||||||||||||| |||
ACTCTCTTCTCTCTCTC-TCT

EST sequence (targeted fragment marked with yellow):
GATGAGACTTGGTCATATATTCATATATAAATATAATAACTCTCTTCCTCAATTCTATATGCTTGTGCATATTAAGTAGGAACAGAGCCACATTACTGTGCTTAATTCTCTCTCTCTCTCTCTCTCTCTTCTCTCATCATTCATTCATTGATGATGGCGAAGAAGAAAACCCTCATCATCAAGAATAATGATAGTAATAGTAGTTCTTCTTCTTCTGCTCCCACACCATCAAAGAAAGTTGTGAAAAAAAGAACCCGCAAAACCATTCCAAGAGATTCACCTCCTCAACGAAGCTCTGTCTACCGTGGTGTCACTAGACATCGATGGACGGGTCGTTACGAAGCTCATTTGTGGGACAAGAATTGTTGGAATGAATCACAGACGAAGAGAGGAAGACAAGTATATCTAGGAGCATATGATGATGAAGAAGCGGCTGCACGTGCTTATGACTTGG


gi|296566502|gb|GW951613.1|GW951613 Dur25.seed.ADAA-aab49f05.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAGA
||| ||||||||||||| |||
ACTCTCTTCTCTCTCTC-TCT

EST sequence (targeted fragment marked with yellow):
ATAGTACTCCATACTTCCTTCTATCGTTTTTTTCATTCTCTCTCTCTCTCTCTCTCTCTTCTCTCATCTTCTATTATATATCCAAAGTATTCTATGGAGTAACAACAAATTACTAATTTAAAAGATGCGGAGAAATTGCATCTTGGAACTTGGGCTCTTTCCTCCCTATGATTCCGGGAGCCCAAAGCGAGAAGAAAGGCAAAGCCAGCCTCGGCAAATTACAATTTTCTATGACAGAAAGATTTGAGTTTCTGATGTCACCGAGCTTCAGGCCAAATCAATCTTACTGCTCGCATATAATGTAGCCAATATTATTAGGACACCACCAACGGGATCATCATCATCATCGGAGCCAGCTTCATCAGCGTCACCGCCGCCACCACCACCGTTATTGAATAATAAGAATCAACAAGTGCATAACACTATTGCTGGTGCTGGACTTTCCATGAAAAGATCGCTGCGTAGGTTCCTACAGAATAGAATGACTCGAATCCGAGAAGCTTCCCCTTACCACCATCACTAGCTAGCGGCTGTTA


gi|296576368|gb|GW958604.1|GW958604 Dur25.seed.ADAA-aad78b12.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAGA
|| |||||||||||||| |||
ACCGTCTTCTCTCTCTC-TCT

EST sequence (targeted fragment marked with yellow):
AGCCACACCACAATACAGCACAATTACACAAGAGACATAATATCTCTCCATTTACACTCTCACCAGTCACCACCTTGTTTCTGTTTTCTCCCAAAATTCTTTTAATTCCCTTTTCCCTCTCTCTCTCTCTCTCTTCTGCCACCTTATCTAAACTTTTCCGGTTTCAGGTTTGAACTTTGAACTATAGCTCTAACTTCTCAGCTGCATCAAACTGTTCTACTCATGTTATAGCTACCCTGCTTCCAAAGTTGAAGGAGCACTTTGGTAAGGTAAGAAATAATCAGTGAGTTCAGATGACTTTGTGAGACGATCAGAGATAAGAATGGTGAGCTTGAGAAGGCGCAGACTTTTGGGATTATGCTCAGGAAGCAGTTCCTTTGTTGCACCCCTCCCTCTATATTGTGAGA