| mature miRNA: TGACAGAAGAGAGCGAGCAC species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9851022|gb|BE595949.1|BE595949 PI1_50_D04.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGCGAGCAC EST sequence (targeted fragment marked with yellow): AAATTTGATGGAGCACCGGATCTTCAGCGTGCTCTCTCTCTTCTGTCAGTTGGCGCTTGTGGATTGCCTGATCCTGTACATCAAACATCCTGCGTTATCCAATTCACTGGTGCCAGCGAGAACAGTGGTGACCTTCATTTATCACATGGGGGGAACTCTGGTCCAGCTTCATGCGCTGATGGACAGCATATAGCTGCTCAGTCTCAGTCTCAGCTGGTTCGTTTTACCATGGATACCAGCAACAATGTCTATGAGCCCAGTTTCTTCGGTGTAAACCAGATAAATTAAGCGTGAAAGATACACGCCAGTTGATCATTTGGATAAATAGCCATGAAGATGGCCTGGGCTTGTGCAGGAAGTTCTTCAACCAACCACCGGACATAAGGATCTCTCAGTTAATGTTATCTGCATATTTATCAGCTTATGTTTAATATGCAGTTCCAACCTGTGATTGACCCATTTTTTCTGTTGTTTTTTTTGCCCCCTGTGATGTGACGACTCTGGAACTTTCTAAGTGTGATACTATGTAGTTTTACACTTTTATTTTAC | |||||||||
gi|45979579|gb|CN142340.1|CN142340 WOUND1_9_H04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_9_H04_A002 3', mRNA seq TGACAGAAGAGAGCGAGCAC EST sequence (targeted fragment marked with yellow): GCACGATTTTTTTAACATAGTCTGCAATCGTCTTTACAAAAAGGCCAAATGACATACCATGTGAATCACAAGGCTTGTATAAGAAAAACGTATGGCTTTACAAGAGGAGGAAATATACACATTATATGACCCGTATATTGCATGTCTGAGTCTGGTAGCACATCAATCAGGTATTCTTCTCTAAAACAGAGAGTGCTGGTGTAAGGTAGTTGTTAGCCTTGTCTGGGAGATGAGCCACAAGCTCACACAGCTCGTTCCCTTGGTCAGCGACGTACTCGTAGCATACATCAAAACTTTTGTTTCTTGCAGTGGAATCATGCAATGCTTTGACACAAATATCTGCCACATCAGCACAGCTGATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAATGCACGCTGGCCACCAGGTTCTTCCTGCAAAGGACCCGGGCGCACGATTGTATATCCAAGGCCTGACCTCCGCAGTGCATCTTCTCCAGCCTTCTTGGCTTTGAGAACTTGTTCTCTTCTGTTAGATTCAATTCCAGAACCTGAACATGACACCAATATGAAGTCTGTTTCTTGACCAGTAGGTAAAGCTTTGATGTATTCCAATTTTAGCTCAAAGTTTCGAGGATCGCTAGCATTTTGAGATCCATCACCAGGTCTCTGCCTTTTTGGTTCAAACCTAATGGTTAGTGTATGCACAAGAAAAGG | |||||||||
gi|14365556|gb|BG947367.1|BG947367 IP1_4_F04.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGCGAGCAC EST sequence (targeted fragment marked with yellow): CTCACCCCCGTGCTCGACTCAGATTGTGCTCTCTCTCTTCTGTCATCCCCCGCCAACTCCTCCAGCGTCGACGTGAGCCGGATGGTCGTCCAGCCCGCGGCGGAGCACATCCCCATGGCGCAGCCCCTCGTCCCCAGCAGCAGCCTCCAGCACCACCACCAGCACCACCAGTTCGGCAGCTCCCCGGGCGGCTGGTTCGCCTGCTCCCAGGCCGGCTCCAGCGCCGTCTCCGGCGCGGGCACCGGCACCGGCGGCTTCGCCTGCCCCGCCAGCGTGGAGAGCGAGCAGCTCAACACCGTCCTGGTGCCCAGCAACGACGCCGGCCACGAGATGAACTACCACGGCATCTTCCACGTCGGCGGCGAGGGATCCTCCGACGGGACGTCCCCTTCGCTCCCGTTCTCGTGGCAGTAGCTTCTTCCGTCCGGTTCAAGCGACCAGTAGTGATCGGTGTTCAGCTGTAGTGATCCTGTTCTTTCTGTGTTTATTTATTATTATTATTCTCCCTGTCATTTGCTCGTTTCTTCGTTTTGCATGCCTGATGCATGCAGCCTGAAAAAACTCGCATAAAATTAGTGCCGAATTTCTCCTGAAACCGTTCTGATATCTTACTGATTC | |||||||||
gi|34515180|gb|CF486311.1|CF486311 POL1_37_B02.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_37_B02_A002 3', mRNA sequence TGACAGAAGAGAGCGAGCAC EST sequence (targeted fragment marked with yellow): AAGGGGAAATACTGTGATTCCATTGCACGTAGCATTAACATCCACAACACAAATGTTCCAAATAAGAAAAAAAAAACAGAACACCTACAACCATCTTTGCATATCTTGGCGTACATCTATCTGACTATCTGTGCATATATATCTGGGAGTACCATGATGCCTTGCTAAATCTATACAAAAAAAAACCCCACAGGCTAGCTAGCTGCAGGATGCAGCTGCAAGCCTGTAATGCCGATCGTGCACGTGCTCTTCTTTCATTACTGAAAGCCTGTTCAACAACACTGCACCGCCACTGTTTTCTACACACGATCTTATCGGAGCCATGTGCAAACGCTTCGTGCTTCGATCATGCACAAAGTCCACCAGCGGCAATCTTGCAGGGGGTGGCTGCTAGGTAGCCAGTAGCCCTCACCAAATGTTTATTGGAACTGAAAAATCTTGAAAAGAACGCAAATTCTGATACACATCGTGTTTCAGGTTACAAACCGAAAACGGCACCACAATCTTTTCTC | |||||||||
gi|37705209|gb|CF756128.1|CF756128 DSAF1_3_E08.g1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_3_E08_A TGACAGAAGAGAGCGAGCAC EST sequence (targeted fragment marked with yellow): GAAATGAATCGCGATTAAATTGAACGTTAACCAGCGCCAGGCTAAACCAACAAAAGAATAGAGTTAGCCATAGTGTAGCAGCTACGCCTGTTTACAGGAAATTACAAAAGAAAAAAAAAAGGAAAGGCCGTAGGCAAAGTGAGAGAGATATACAGCTAAGCTAGCTACATGCTCTAAACACTTGCAGATAAATCAAAGTAGCGAGGTTCTCTTTAATTTTCTGCCACTGACAGCCAGGCATCAAAGAGCCACCGGCAGTGACACGGAACCTCCAGCAACAAGAATATTGTCACGTGTGTGTCTTCTAAGCGTGCCCCCAGAGGCCTCAAATTGGAGGCCCTGCTGCACAAAAGAATCGATTAGCCAGCCACTTCCTTTGCTGCCAATTCTAAAGTCAGTCTGCTGCCCCTGTGCTAATCAAATCAGCTTTGCCCACAATCACCACCTGATCCCTCTCTTCTGTCACCTCGTTTTGTAGTTAACAATGCAACTAAACAAAGAATTCGTCTGCTCAGTAGAGGTTAGCACCTGTGATTCCCTAAAATGTACGTGGAAAACCAAGCGACAACTTGTCCTCCCTTGCAAATCTCTGCCCC | |||||||||
gi|7660875|gb|AW747137.1|AW747137 WS1_66_A09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGCGAGCAC EST sequence (targeted fragment marked with yellow): TTCGGCACGAGGATGTGGACATGCAAAAGATACCAGTTCGATTTGCTATCACAAATGCTGGTCTGGTGGGATCTGAGGGCCCAACTAACTCAGGACCATTTGATATTACATTCATGTCATGCTTGCCAAACATGATTGTCATGTCACCATCTAATGAGGATGAACTTATTGACATGGTGGCAACAGCTGCAATGATTGAGGACAAACCTATTTGCTTCCGCTATCCTAGGGGTGCCATTGTTGGGACTAGTGGAACTTTAACATATGGGAATCCGCTTGAGATTGGTAAAGGAGAGATTCTTGTCGAGGGAAAAGAGATAGCTTTTCTTGGCTATGGCGAGGTGGTCCAGAGATGCTTGATTGCTCGATCTCTTTTGTCTAACTTTGGCATTCAGGCGACAGTTGCAAATGCGAGATTTTGCAAGCCACTTGACATCGATCTAATCAGAACGCTATGTCAGCAGCACAGTTTTCTTATCACAGTTGAAGAAAGAACAGTTGGTGGCTTTGGATCACATGTCTCTCAGT | |||||||||
gi|160713647|gb|EH409271.1|EH409271 RTHAIR1_35_F11.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_3 TGACAGAAGAGAGCGAGCAC EST sequence (targeted fragment marked with yellow): GTAGAATTCCCCTCGCGTATCTCCAGCTTTCAGACGTCAAAGACGATGCTGCCGCTGAGGTCCGCCGCGGCCGCGCCGTGCTTGGTTGCAGGATTGCTGCTCCACCGATTCTCATCCTGCTCGTCCTCTTCTGTCTATTCGGTCCGCCACCACGCCTCGTATGCTGTCTCCTCCCAGCCCTCCACCTGCCCCACCACTACCTGGTTCCCTTTCCCCCATTCCAGCAGCCCTAGGATCCGGGGATTTGCCGCCTGGGCATCGGCGCCGGGGCAGGCGGGGTCTGCGGATTCCCCCGCTACAAAGGCGCTAGAGGCTAAGATCAAGGAGCAGCTGCAGGCGGACACAGTCACGGTTGTGGATACCTCTGGGGATGGCCGCCATGTCTGCATAGATGTGGTTTCCAAGGTATTTGAGGGAAAATCAGCTGTAAATAGGCAGAGAATGGTTTACAAGGCTATATGGGAGGAGCTTCAGAGCACTGTGCATGCTGTGGACCAAATGACTACAAAAACGCCTGATGAAGCTGGTGCCAAGTAATCGATAGCTGCATAATACCGGGGAGACAGATTATCTGTGCTTTTAAGATCAGGCCATTGTGTCGACAAAAAATTCTCTTGTGTAGTATTAATTTGCGTGTCAACTGAATGATCAATAATTTGGAGTATGATTAGCGTGGCTTCAAAAACAATATATACATGTTTCTTCTCTGAGCAAAAAAAAAAAAAAA | |||||||||
gi|45961778|gb|CN132042.1|CN132042 OX1_3_F05.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_3_F05_ TGACAGAAGAGAGCGAGCAC EST sequence (targeted fragment marked with yellow): CTGGACCTACCTGCGCGTTGAGTTCCCGCCGTCGTTCTCTTCTGTCACCATGGATTTCGCTGCTGACATAGACCTTCATAGGGAGCACTTGAAAGGCATTCCAAGAAGCGAGCTTGCTATTATCTGTTTGATGAATTCCAACCCTCCAATTCCTGATATATCTGATTCTTATCTGGACAATTTATTATCAAACTCTCTCCCAGCTGGACCTTTTGGCAACAGCAATATAATTAATCAGCCAAATCTGGTGCAATGCATACCATTTCAGAAAAACACAACGGTAGTGCTAACAAATGACCAGATATCTCCTGGGGTATGGTACATTGGGTACTTTCATGGCCTTGGTCCTGCTCGCACGCAATCAAAGATGATTAGCCGAGGAAAAGCACGCGTGGTGAGCACTCGCATTACTGTAAGAGGATGCCCCACTTCAGCATTTTGGGGACCATACTGCAACCAGACAGTTGACATGATTGGTTGTTCTCAACCTTCATCAATAGATAATAACTCAAGAAATCTTCTAGATCTGAATGTTGAGAGGAGGAACAGTTTGTATACTAGAAAGCACAATAGGCGTAATAATATCTTATCACAGCCGAACCATTTAATAGAACAAGAAGTTGCATCTAACGCCACGGCCTTGGTGAGAATGGAAAACTCGATCAGTTGTTCCATTTCTAATGACTCCTTATGCATCAGACAAGGCGACATGAAGTTCTACTTCTTGGATGTAG | |||||||||
gi|7660905|gb|AW747167.1|AW747167 WS1_66_F11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGCGAGCAC EST sequence (targeted fragment marked with yellow): CACGGGGTGGAGGCGGGCAACAATCCCGCGGAGCTGGCGGCGGCCGTGGGTGGCGCCTCCAGCAGCTCCTCCCGGGCGGCGGCGAGGAGCAGGGTCGCGGCGGCTGCTGGCGCCTCCGGCTCCTCCCCGGTGGCGGCGGCGAGGAGCAGGGGCGCCGGCGCCGTGGCCGCGGCGGCGGGCGGCGGCGGTGGCGTCGGGCCGAGCTGCCAGGTGGAGCGGTGCAACGCCGACATGGGCGTGGAGAAGCGGTACAACCGGAGGCACAAGGTGTGCGACGCGCACCGCAAGGCGTCCGTCGTCCTCCTCGCCGGCCTCCGCCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCACGAGCTGTCGCACTTCGACGACACCAAGCGGAGCTGCCGCCTGCGCCTGGCGGGGCACAACGAGCGGCGCCGGAGGAACCCGGCGGAGGCGCACGACCAGAACGGCGGCCGGGGCGACCCGGGGAACCACCACCTCCACATCAGATCAGATAAACCTATCTAAGCATGCTCTCTCTCTTCTGTCATGCAGGATGCACCTAGCATCACCGATCGATAATCCGATTTGTGTCTCAGTGCCTACCCTGTCCTGTGTCTGTGTGTTGCGTATGGTACGTGCTGCTGCTACTACGTGCTAACTT | |||||||||
gi|14365557|gb|BG947368.1|BG947368 IP1_4_F05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGCGAGCAC EST sequence (targeted fragment marked with yellow): CGCGGCCCCGCCGCCCGAGAGCAGCAGCAGCAACAAGATGTTCTCCGACGGGCTCACCCCCGTGCTCGACTCAGATTGTGCTCTCTCTCTTCTGTCATCCCCCGCCAACTCCTCCAGCGTCGACGTGAGCCGGATGGTCGTCCAGCCCGCGGCGGAGCACATCCCCATGGCGCAGCCCCTCGTCCCCAGCAGCAGCCTCCAGCACCACCACCAGCACCACCAGTTCGGCAGCTCCCCGGGCGGCTGGTTCGCCTGCTCCCAGGCCGGCTCCAGCGCCGTCTCCGGCGCGGGCACCGGCACCGGCGGCTTCGCCTGCCCCGCCAGCGTGGAGAGCGAGCAGCTCAACACCGTCCTGGTGCCCAGCAACGACGCCGGCCACGAGATGAACTACCACGGCATCTTCCACGTCGGCGGCGAGGGATCCTCCGACGGGACGTCCCCTTCGCTCCCGTTCTCGTGGCAGTAGCTTCTTCCGTCCGGTTCAAGCGACCAGTAGTGATCGGTGTTCAGCTGTAGTGATCCTGTTCTTTCTGTGTTTATTTATTATTATTATTCTCCCTGTCATTTGCTCGTTTCTTCGTTTTGCATGCCTGATGCATGCAGCCTGAAAAAACTCGCATAAAATTAGTGCCGAATTTCTCCTGAAACCGTTCTGATATCTTACTGATTC | |||||||||
gi|7553383|gb|AW679616.1|AW679616 WS1_2_B01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGCGAGCAC EST sequence (targeted fragment marked with yellow): AGTCATGGCAAAGATGAGCCTTGGCCAATGAAAGGTCCGGACATGTCTATAACTGCTTCAAAATTTGATGGAGCACCGGATCTTCAGCGTGCTCTCTCTCTTCTGTCAGTTGGCGCTTGTGGATTGCCTGATCCTGTACATCAAACATCCTGCGTTATCCAATTCACTGGTGCCAGCGAGAACAGTGGTGACCTTCATTTATCACATGGGGGGAACTCTGGTCCAGCTTCATGCGCTGATGGACAGCATATAGCTGCTCAGTCTCAGTCTCAGCTGGTTCGTTTTACCATGGATACCAGCAACAATGTCTATGAGCCCAGTTTCTTCGGTGTAAACCAGATAAATTAAGCGTGAAAGATACACGCCAGTTGATCATTTGGATAAATAGCCATGAAGATGGCCTGGGCTTGTGCAGGAAGTTCTTCAACCAACCACCGGACATAAGGATCTCTCAGTTAATGTTATCTGCATATTTATCAGCTTATGTTTAATATGCAGTTCCAACCTGTGATTGACCCATTTTTTCTGTTGTTTTTTTTGCCCCCTGTGATGTGACGACTCTGGAACTTTCTAAGTGTGATACTATGTAGTTTTACACTTTTATTTTACTGCCCTGATGATGATGATGATGATGATGTCAACGGTTGGATATCTTTAAACTGTCCTTGATGAATCTGGACATGTTTTTTT | |||||||||
gi|34515892|gb|CF487023.1|CF487023 POL1_41_G01.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_41_G01_A002 3', mRNA sequence TGACAGAAGAGAGCGAGCAC EST sequence (targeted fragment marked with yellow): AATTGAACGTTAACCAGCGCCAGGCTAAACCAACAAAAGAATAGAGTTAGCCATAGTGTAGCAGCTACGCCTGTTTACAGGAAATTACAAAAGAAAAAAAAAAAGGAAAGGCCGTAGGCAAAGTGAGAGAGATATACAGCTAAGCTAGCTACATGCTCTAAACACTTGCAGATAAATCAAAGTAGCGAGGTTCTCTTTAATTTTCTGCCACTGACAGCCAGGCATCAAAGAGCCACCGGCAGTGACACGGAACCTCCAGCAACAAGAATATTGTTACGTGTGTGTCTTCTAAGCGTGCCCCCAGAGGCCTCAAATTGGAGGCCCTGCTGCACAAAAGAATCGATTAGCCAGCCACTTCCTTTGCTGCCAATTCTAAAGTCAGTCTGCTGCCCCTGTGCTAATCAAATCAGCTTTGCCCACAATCACCACCTGATCCCTCTCTTCTGTCACCTCGTTTTGTAATTAACAATGCAACTAAACAAAGAATTCGTCTGCTCAGTAGAGGTTAGCACCTGTGATTCCCTAAAATGTACGTGGAAAACCAAGCGACAACTTGTCCTCCCTTGCAAATCTCTGCCCCGAACTGCCCTGCTGCTCAATCTGCCTACTGGCACT | |||||||||
gi|57816609|gb|CX617822.1|CX617822 GABR1_36_B04.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_3 TGACAGAAGAGAGCGAGCAC EST sequence (targeted fragment marked with yellow): AAAAGGCCAAATGACATACCATGTGAATCACAAGGCTTGTATAACAAAAACGTATGGCTTTACAAGAGGAGGAAATATACACATTATATGACCCGTATATTGCATGTCTGAGTCTGGTAACACATCAATCAGGTATTCTTCTCTAAAACAAAAAATGCTGGTGTAAGGTAGTTGTTAACCTTGTCTGGGAGATGAGCCACAAGCTCATACAGCTCGTTCCCTTGGTCAGCGACGTACTCTTAGCATACATCAAAACTTTTGTTTCTTGCTGTGGAATCATGCAATGCTTTGACACAGATATCTGCCACATCATCACAGCTGAAACCCTGAAAGATTCTGTTCCCTTGATCAAAGATCAATGCACGCTGGCCACCAGGTTCTTCCTGCAAAGGACCCGGGCGCACGATTGTATATCCAAGGCCTGACCTCCGCAGTGCATCTTCTCCAGCCTTCTTGGCTTTGAGAACTTGTTCTCTTCTGTTAGATTCAATTCC | |||||||||
gi|9849638|gb|BE594565.1|BE594565 PI1_34_G09.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGCGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGCTCGTGTTATGGGAACTTTTGGGTATGTTGCTCCTGAATATGCAATGACTGGCCATCTTCTAGTAAAGAGTGATGTTTACAGCTACGGTGTTGTTCTTCTTGAGCTCCTTACTGGGAGGAAACCGGTAGATATGTTAAGACCTGCTGGACAGGAAAACTTAGTCGCATGGGCTGGTTCTCTTCTGACAAGCAGGGATGGTCTGGAATCAATCATAGATCCTTCACTTGGGAGCAGCATTCCATTTGACAGCATCGCAAAAGTAGCAGCCATTGCTTCAATGTGTGTTCAGCCTGAGGTGGATCAGCGCCCATTCATGGGTGAAGTTGTTCAAGCTCTAAAGTTGGTATGCAACGAAGGCAGCGAGTTCAATGAAACCACAAGCTTTAGCCAAGATTTGCATATCCAAGATGTTGAGGCTATGAGTAGAGCAAGTATGGACATAGACGTTGACCCAACACTATCAGCGGAGCTGTTCACTTCATCAGCGCGTTATGATGCTATGGATGCCTCTGGTTCTTTCCGAAGATAC | |||||||||