| mature miRNA: TGACAGAAGAGAGGGAGCA species: Cichorium endivia database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|125344980|gb|EL359574.1|EL359574 CCEM4360.b1_P09.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEM4360, mRNA sequence TGACAGAAGAGAGGGAGCA EST sequence (targeted fragment marked with yellow): ATGATTTTACGGATCTACACGTCTCTTTCGTCTTTTCAGATCCCTGACGACCTTCGGAGTCTATATCATCGGAAATACATGACCAATAAGCGGGGGCAGATGAATCTTGATGATCGGACAGCTCATGATCTTCAGTCAGTCGGCTGCGTTACAGATGAACGAATCCATTCAAAATCTCTTTGTCCCTGGAACTTCAAAGGGAACCCTAGATTTGATGAATACATTGGGGCTTCGGATTCGGTGTCTACCGGGCTATCAAGAATAGCTTCGAGTTCTGGGAGTGCTCTCTCTCTTCTGTCATCTCAATCTCAGTGTACTTCGTGTCATTCCTCGAGAATTCAAACATCAAACTTGCAATCACACGTCCCGACGTGGTTTCAGGGCAGCCATTGTGGACCAAATCAAGACTCTCCACCGTTGAATCAGCATGATGTGGACTCCATGGCTGGGTTTGAGGGTAGTTCGTTCCAGTTTGCCATTGATGGGATGTTCAAAGGGTCAAAATGCATGAACTCTGACGACCTAGTTTTTGCAGATGAAGGGTGTACTATTGATTTGCTACAGTTATCATCACGTCTTGAGAGAGTTGAGCATCAAAAGCGAAGCTCGCAAATGAACCGTGCATTTGCAAATGGTGTTTCTGATGGTCTTGGTATTTCGTAAGGACAAACAAGAGTCACAAGATATTAGGAGCAGCAACCACTGGGAGTCTTTGGCAGACGGTTTTCTACAAGCATCTCAATGCCACTAAAAGAG | |||||||||
gi|125339528|gb|EL354122.1|EL354122 CCEM10785.b1_A09.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEM10785, mRNA sequence TGACAGAAGAGAGGGAGCA EST sequence (targeted fragment marked with yellow): TGCTGCTTCTCTTCTATCCCTCTCTCTCCCCAAACCAACCATACTCATTCCAAAATCAACCGCTTCCACCATAACTCCTTCTGTTACAGTTACAGAGACTCTTGATCAGAAATTCGGCCGCAAAGGTATCAAATTCTCGGAGTTCGACGGAGCTCAGATCGCAGAACTTACCGTCCGAAATGGCAGTTCGTTGAAGGTTCAATTGAACAATGCTCATGTTACTTCTTACAAGCCTAAAGTTTACTGGAAAGATGATGGATTCGAAGAGGTACTGTATACTACTTCTGCTGCAAAAGGCGGGATCGGTTTGGTGATTAATACCGCTGATGATTCGAAATCCAAAGGTGTTGATTTGTCGGAATGGGTCGTCAAGGATGTTGATTCGGACTCCATTGATGCTGTTCAGGTTGAGTTGAGTTGCACGACTAGCGGAACTCTTGACATAACCTACATCATCTCCTTATACGCACTAAGCATGGCAACTGCAGTTATAGTCAAGAACAATGGTCGCAAACCCGTTGACCTAAAAACCGCGATACTGGGCCATCTCTTGTCTAAAAATAGAGGAGGAACTGCCATTCAGGGCCTCAAGGGTTGCAAATATTGCACACAACCTCCTTTATCTTCTTCTTTTGGGGTTCTCTCTCCACCCGAAGCAGTAAAACCAGAGGATCCAGGCTGGTTTTCCTTCGGGTGGGAACCAGAGAAAAAAGGAGGAGTTTGGAGTGTGCAAGATTTGCCGCTTACAATTTTGAAGCATAAACTTAGTAGAGTTTATGGCGCTCCCTCTGAGGAGAGAT | |||||||||
gi|125339107|gb|EL353701.1|EL353701 CCEM10343.b1_N18.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEM10343, mRNA sequence TGACAGAAGAGAGGGAGCA EST sequence (targeted fragment marked with yellow): GGCCCCCAGGGTATCTGAAGCTACAGGGATTATCCACGCGAGAGATCATTGGGTTGCGTGTTCAAAGCATCATCCTCGTGGCACTTCAGTTAACTGGAGAGAGACGAGTTTGATTCTTTGATCACTGCATCCAATCCGAGTTCCGTGGGTTTCCCCGTGGGCTTCAAAACACTGGAGGAACACGCCCGCTATCCCAGGGCGCCCCCCCCGCGTCCTTCTGGATTATCGAGGAAACCACCACAGGCGCCTGGTAAGAGGCGACCCTTGTCATGTTTAGTGGATGGATGTACAGCGGACCTGAGTAGTTGCAGAGACTATCACCGGCGGCATAGAGTTTGTGAAGCTCATTCCAAGACACCGATTGTTGACATACGTGGCAAAGACCAAAGGTTTTGCCAACAATGCAGTAGATTCCATTCAGTTGGGGAGTTTGACGAAGTAAAGCGGAGTTGCCGGAAGCGGCTTGATGGGCACAACAGACGTAGGAGAAAACCAAGGGGAACAGAATCGACTATGTACTTGAACAATTATGAGAGCTTCTTCACCAATCATCAAGGAAAAATTGTTGCGGCTTGGTGGTTCGCCAGCGTACACCGGTGGTCCGCTGAGGTGGCCCAATAGAGAAAAGGCATCATCATCGAGAGAGAAAAAGTTTCCCTTCCTATTGGGGGCCTACTCTGATGAACCCTCGTTCCTAAACAACACACATGCGTCGTCACATCAGGAAAGATCGACACAAATAGTTGAACCCAAGGCTAACGGCGGTGCTCTCTCTCTTCTGTC | |||||||||
gi|125334365|gb|EL348959.1|EL348959 CCEL5388.b1_G03.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEL5388, mRNA sequence TGACAGAAGAGAGGGAGCA EST sequence (targeted fragment marked with yellow): AAAGATTCGTAACCCATACGATTCCCTTTCGACACTCTCTTTGCCGCTTCCAGCTTCGGCTGACTTCATTTATCATCTTCAGGGAATTTTATAATGACAGAGCCTTCTAAAGTCATTCACGTTCGGAATGTTGGTCATGAGATTTCGGAGCCTGATCTGCTTCAGCTATTCCAACCATTTGGAGTCATCAACAAACTAGTTATGCTTCGTGCAAAAAACCAGGCTCTCCTTCAAATGCAAGATGTTCCTTCAGCTGTCAATGCAATGCAATTCTATGCCAATGTTCAACCAAGCATAAGGGGAAGAAATGTTTATGTTCAGTTTTCATCTCACCAAGAGCTAACCACCATGGAGCAAAATACTCAAGGACGTGGAGACGAGGAGGTTGACATATTTAAAATTCTCTTTTCTCTTTCTCTTTCTTCTTTTCTCTATCTATTCTTCTCTATTCATTCTATTCTCTTCTCTCTCTTCTGTCTATTATGCTGGGCTGCAATCGGATGCTTTGCGGAACACAGCCTAACCGTATACTCCCGGTTACAATTCATCACATGCTTTACCCCATCACCGTTGAAGTCCTGCATCAAGTTTTCTCTCCTCATGGTTATGTGGAGAAAATTGTCACTTTTCAAAAGTCAGCTGGTTTTCAAGCACTTATTCAGTTTCAATCGCGCCAGAGTGCTGTGTCTGCCAGAAATTCCCTTCAGGGGCGGAATATTTATGACGGTTGCTGTCAACTAGATATTCAGTTCTCNAATCTTGAAGAGTTTGCAGTGAAACTACATAATGAGCGGTCTAGGGATTTTACAAACC | |||||||||
gi|125352220|gb|EL366732.1|EL366732 CCES2842.b1_D15.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCES2842, mRNA sequence TGACAGAAGAGAGGGAGCA EST sequence (targeted fragment marked with yellow): CTCGCAGCCTTTTGTTGCTCTTGCTCTTCTCTCGATGCTTCTTCTTGTTCAAGCTAATGAATTGGTGAACGAGTTCGATGGAAATAGTATCACGGCATCAAAGAACAATTGTGGAGCAGCATGTAAGGCCAGGTGTCGGTTATCATCAAGGCCGAACTTGTGCCACAGGGCTTGTGGCACTTGTTGTGCTCGTTGTAGCTGCGTGCCACCGGGAACATCTGGTAACCAAAAGGTTTGCCCTTGTTACTACAACATGACCACCCACGGTGGCAAACGAAAGTGCCCGTGATTCTTCTACTACTTGCGACTTTGTGCAACTTTGATGTGATGCCTTCGTTACATATGTTTGTATTGTATATTTTTCCATGGATTCTTGTCCAGCGAGTGTTCTTTATTCCTATGCATTATCGATGTTTAATAAGGTCAAATTCAGAATAATTGTTTTGTAATAATTATATTTTTGTACGATAAAGTTGTATAATAAATTGGATTTGATGGTTT | |||||||||
gi|125348866|gb|EL363378.1|EL363378 CCEM7861.b1_J21.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEM7861, mRNA sequence TGACAGAAGAGAGGGAGCA EST sequence (targeted fragment marked with yellow): GTACAAAGTTTTCTCCGGAGAAAGTTGAGCATGACAAAGAAAGATTTCGTGAATGATCCTTATGGTCATGTGTTGATGGGCGGCAATGGCGGTGAAGATGGCGGTGATGGTGGTGGTGGCGGTTCTTCGAACATGGAGTTGAAGAAGAAGAAAGTGGCTCAAAATGGTGGTGGTTCGAATAGTGCCACGAGGTGTTGTCAAGCTGAAAAATGTTCAAGTGATTTAGGTGAAGCAAAACAGTATCATCGAAGGCATAGAGTATGTGAGTTTCATGCAAAAGCTCAAGCCGCCATTGTTGGTGGTATACACCAAAGATTCTGTCAGCAATGTAGCCGGTTTCACGAGCTTTCAGAATTCGATGAAGCAAAGAGAAGTTGTAGAAGGCGTTTAGCGGGCCACAACGAAAGACGAAGGAAGAATTCAATGGAGTTCAAAGGCAACGGGAAAGAACTTGTTTGTGTTCAAAGTGATGATAGGAGGTTTCAAATGGTTATTCAAGAAAACCAAACTTATAAACATTTGCAAACCAGATGAAAATCTTAAATAAATCGAGGCAAATAGTAGTAATATGTATGTATGCATGCTCTCTCTCTTCTGTCACTTTCCTAGTACTTAGAGAACTGTTTGTTTTTAATAACCGTGTGTCGAATACTGTTGTCGAATGTTGAAAACTGATTATTATTAACCAATGTTGCATTTGTATGTTCCTAATATAATTGTTGTAATAATAACGTTTTGTTGGATCCAAAAAAAAAAAAAAAAAAAGGCCGCCTCGGCCCAGTCGAC | |||||||||
gi|125331464|gb|EL346058.1|EL346058 CCEL2192.b1_O20.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEL2192, mRNA sequence TGACAGAAGAGAGGGAGCA EST sequence (targeted fragment marked with yellow): CGGGCGAACAATCGATTTGCACCTTCTCTTCTCTCCCTCTCGCGGAATTTTTGCTACGAATCTATTCGCATTCTTATTATCTCTGCACTCACCTGCTTTTTCGTTTTTTTCGTCATCAAGAATCGATCTCACCTGCCACTGCAGCTCCAGTCATCTACAAGGGGATTCCTGATATATTGAGAATCTCAGGATCGAATCTAAGCAGACGGAAAGCTTGAAATATTACTGTTAAGGCAGAGCTGAAGAGGACATCGGATACACATAAATCTGGATATTCGAAGGGACCGAGGAAATGTCCTCCCATAAAGGTGAGCATCAAACGGTCCCGTTATCGGTGTTGTTGAAGCGTGAATTGGCGAATGAAAAGATCGAGAGGCCGGAAATTGTTAGTGGTCAAGCCAACCAATCCAAAAAATAAGAAGATTTCACATTGATCAAGAGCGAATGCCAACGCGTTTTGGGAGACGGTGTTACTACGTACTCCGTCTTTGGGATGCTTGATGGCCATAACGGTACTGCAGCAGCTATATACACCAAAGAGAATCTTTTAAACAATGTTTTGAGTGCTATTCCTCAAGACCTTAACCGAGATGAATGGATTGCAGCATTACCTAGGGCTTTAGTGGCCGGATTTGTAAAAACAGATAAAGATTTTCAAGTAAAAGGGCAATTGTCAGGAACAACTGTCACATTTGTAATTATTGAAGGAATCATAGTAACTGTAGCATCAGTTGGTGATTCCCGCTGT | |||||||||
gi|125332801|gb|EL347395.1|EL347395 CCEL3572.b1_H05.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEL3572, mRNA sequence TGACAGAAGAGAGGGAGCA EST sequence (targeted fragment marked with yellow): ATTGATAAAGACGTCTCTTCCCGATTCGCTCCTCCAATTTCCTCTCTCTCCTCTGTCGGATTATAGAGAGAGAAAATAACCACCGAGCCGCCCCTGCCGACGACGACGATGGATCTTAATCGTGCTGAAAATGAGAAGGGCAGCAACCAGGAGGCCGTTTCAGCTGCCACCTCCTCCGATAACCATATTTCGACTATCGTTATCATCATCGCTATGCAGACGGAAGCACTTCCTCTTGTGGACACTTTTAAGCTGACGGAGGACCTAAATTCTCCGTTCCCAAAAGGAACTCCATGGGTCCGCTATTATGGTTCTTACAAAGATCTGAATGTAAACATCATATGGCCAGGAAAGGATGCTACTTTAGGAGTTGACAGTGTTGGCACTGTATCTGCATCTCTTGTGACTTATGCTGCCATTCAAGCATTAAAACCAGACCTTATTATAAATGCTGGTACTGCTGGTGGCTTTAAAGCGAAAGGAGCATGTATTGGTGATGTGTATGCTGCATCAGCAGTTGCTTTTCATGATAGAAGGATACCAATCCCAGTTTTTGATCTGTATGGAGTTGGTTTGCGACAGGGCTGTTCAACACCAAACCTGTTAAAGGACCTCAATCTTAAGGTTGGCAAACTGTCGACTGGAGATTCTTTGGATATGACCCCAATGGATGAATCTTCCATAATTGCAAATGATGCAACAGTCAAAGACATGGAGGGTACTGCGGTTGCTTATGTGGCAGATCTCTTAAAAGTCCCTGCATTATTTATAAAAGCGGTCACTGATATCGTTGA | |||||||||