| mature miRNA: TGACAGAAGAGAGGGATCAGG species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|7660905|gb|AW747167.1|AW747167 WS1_66_F11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): CACGGGGTGGAGGCGGGCAACAATCCCGCGGAGCTGGCGGCGGCCGTGGGTGGCGCCTCCAGCAGCTCCTCCCGGGCGGCGGCGAGGAGCAGGGTCGCGGCGGCTGCTGGCGCCTCCGGCTCCTCCCCGGTGGCGGCGGCGAGGAGCAGGGGCGCCGGCGCCGTGGCCGCGGCGGCGGGCGGCGGCGGTGGCGTCGGGCCGAGCTGCCAGGTGGAGCGGTGCAACGCCGACATGGGCGTGGAGAAGCGGTACAACCGGAGGCACAAGGTGTGCGACGCGCACCGCAAGGCGTCCGTCGTCCTCCTCGCCGGCCTCCGCCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCACGAGCTGTCGCACTTCGACGACACCAAGCGGAGCTGCCGCCTGCGCCTGGCGGGGCACAACGAGCGGCGCCGGAGGAACCCGGCGGAGGCGCACGACCAGAACGGCGGCCGGGGCGACCCGGGGAACCACCACCTCCACATCAGATCAGATAAACCTATCTAAGCATGCTCTCTCTCTTCTGTCATGCAGGATGCACCTAGCATCACCGATCGATAATCCGATTTGTGTCTCAGTGCCTACCCTGTCCTGTGTCTGTGTGTTGCGTATGGTACGTGCTGCTGCTACTACGTGCTAACTT | |||||||||
gi|13586103|gb|BG557105.1|BG557105 EM1_42_F11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): GTAACATTATGTGATGCATTGTACAAAGGGGCTATCAAAAAGGGCTCGGCATACCCAACTGAAATCCACAAGAAAGACTTGGGTTCAACATTTTTAAACCGCATGCAAGTTCACCACAAAGTATCAAGAGGGACTCAGGAGGTCATACGCAAGGGTGCCATAAGAACTATTCAGATCATGACAGAAAGAAGACAGGGTAACAAGAAGATGACTCGGCTTTCCGGGCTCGAGTGTTTTCTGATGGATCCTGATTCATTGGCTTCTGAACTCCAGAAAAAATTTGCCTGCAGCACCACCACAGCAGAGCTTCCAGGTAAGAAAGGGCAGTGCGAGGTCTTGGTACAAGGTGGAGTGATTGATGACCTTGCGAAACACCTTGTCGACCACTACGGTGTTCCGAAAAGATACATCGAGGTTTATGACAAAACAAAGAGGTAGGAAGGGGGAGCTGATCAACTGGAGTGCCTTTCAGGTGTTGCCGTGTTGGTGCGCTTTGATGGTCGCTGGTCCGAGGATCATCAGCTTTGTGCAAAATACGAAATGGTCCCAGGATTGTTTCATGATACTTCTTTTTTGTCATGAGATGTCTAGGCATTATTACGACAGTGTTGAATTATGTGAGTTATATATTTGTTTCTC | |||||||||
gi|14593685|gb|BI141242.1|BI141242 IP1_53_B02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): TCGGTTCCTATCTGATCGTTCTCTTCTGTTTTCCTAGTAATCACTACACGGGGTGTTGATGATCTCATTAACATATTCCGGCGGCCTCCATCACGCAAGCTCAAGGGGGCGTAGGCTATAGGTTATGTTTTGTGTATTAGCGCCAAGAGACGCGTGCCTAGTTATTAGAAGAAGAGATAGACATGAGGATGACAGGCAAGCTAGCTTCCCACAGCACATAGACATGTACTTTCAAAATTTTACTGTTCCCCCGCACTCCGGCCAAATGTGAGTGGCTTCAAGTTCACAGAGCACANAAAAACAATTTCTTCCTTTTTTGTGTGAGGAAATTGCGANCTGTAATTTAGTCTGTATGTTGGTT | |||||||||
gi|30949567|gb|CD212461.1|CD212461 HS1_5_H05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_5_H05_A012 5', mRNA s TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): AATGCTCTCCACCTATCTCTCCCACCTCTCTCCATCCCTCTCCTCTGTCATTTTTCTTACCCTTTCTCCCAACGCTCTGCTCTCTCTCTAGAGGCTCATGAACTGAAAAATTTCGTGTTGTTTGTGTTGAGATTTGAGATGGGAAAGAAGGCCCGAATCCTTCTCGTGCCCTCTGGGATTCATGGCAAATATATGTGATTTTGTCTTCACTGTGTTCTCGTGATTTTTCTTTTTTGTTCTTGTCCATGATTTGATTTTCCAGGAGTTTGGATTGATTGCAAGTGATGATCTTTGGGGGATAGTTTTGTGCCTAGATGAATTTCATCTTACCAAATTTTGGGTTCGATTCATGGAGCTTTGGCTAAGTTCTCGTTGATTTTGTGGCCGTCGGGTTATTTTGTTCTTCCCCTCTGTGTTCTGCTCGTGATCCTTCTCTGCGTGCTGATGGGGAGTGGCAGTAGTGCTATCAGCGCCGGTGCTCTGGCACCTCGCGTGCTCAGTTGAGCGGCATCTACACCTGAGCCTCGGTGCCCGTGTCTCTAGCAGAGTCCAGACCGTCAGTTTCTGTGTCGTGTTTTTCTTCAGTTTTGTTTTTCTGTTCTTCCTTTATTTCTTCTCTGCGTCTAGCTAAGTTGAGCTCCAGGTTCCGAGCACTGTCTCTTTTGGGTGCCGTCGT | |||||||||
gi|14365557|gb|BG947368.1|BG947368 IP1_4_F05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): CGCGGCCCCGCCGCCCGAGAGCAGCAGCAGCAACAAGATGTTCTCCGACGGGCTCACCCCCGTGCTCGACTCAGATTGTGCTCTCTCTCTTCTGTCATCCCCCGCCAACTCCTCCAGCGTCGACGTGAGCCGGATGGTCGTCCAGCCCGCGGCGGAGCACATCCCCATGGCGCAGCCCCTCGTCCCCAGCAGCAGCCTCCAGCACCACCACCAGCACCACCAGTTCGGCAGCTCCCCGGGCGGCTGGTTCGCCTGCTCCCAGGCCGGCTCCAGCGCCGTCTCCGGCGCGGGCACCGGCACCGGCGGCTTCGCCTGCCCCGCCAGCGTGGAGAGCGAGCAGCTCAACACCGTCCTGGTGCCCAGCAACGACGCCGGCCACGAGATGAACTACCACGGCATCTTCCACGTCGGCGGCGAGGGATCCTCCGACGGGACGTCCCCTTCGCTCCCGTTCTCGTGGCAGTAGCTTCTTCCGTCCGGTTCAAGCGACCAGTAGTGATCGGTGTTCAGCTGTAGTGATCCTGTTCTTTCTGTGTTTATTTATTATTATTATTCTCCCTGTCATTTGCTCGTTTCTTCGTTTTGCATGCCTGATGCATGCAGCCTGAAAAAACTCGCATAAAATTAGTGCCGAATTTCTCCTGAAACCGTTCTGATATCTTACTGATTC | |||||||||
gi|30934753|gb|CD205065.1|CD205065 HS1_11_F06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_11_F06_A012 5', mRNA TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): AATGCTCTCCACCTATCTCTCCCACCTCTCTCCATCCCTCTCCTCTGTCATTTTTCTTACCCTTTCTCCCAACGCTCTGCTCTCTCTCTAGAGGCTCATGAACTGAAAAATTTCGTGTTGTTTGTGTTGAGATTTGAGATGGGAAAGAAGGCCCGAATCCTTCTCGTGCCCTCTGGGATTCATGGCAAATATATGTGATTTTGTCTTCACTGTGTGCTCGTGATTTTTCTTTTTTGTTCTTGTCCATGATTTGATTTTCCAGGAGTTTGGATTGATTGCAAGTGATGATCTTTGGGGGATAGTTTTGTGCCTAGATGAATTTCATCTTACCAAATTTTGGGTTCGATTCATGGAGCTTTGGCTAAGTTCTCGTTGATTTTGTGGCCGTCGGGTTATTTTGTTCTTCCCCTCTGTGTTCTGCTCGTGATCCTTCTCTGCGTGCTGATGGGGAGTGGCAGTAGTGCTATCAGCGCCGGTGCTCTGGCACCTCGCGTGCTCAGTTGAGCGGCATCTACACCTGAGCCTCGGTGCCCGTGTCTCTAGCAGAGTCCAGACCGTCAGTTTCTGTGTCGTGTTTTTCTTCAGTTTTGTTCTTCTGTTCTTCCTTTATTTCTTCTCTGCGGCTAGCTAAGTTGAGCTCCAGTTTCCGAGCACTGTCTCTTTTGGTTGCCGTCGTGTGGGTGAGC | |||||||||
gi|14365556|gb|BG947367.1|BG947367 IP1_4_F04.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): CTCACCCCCGTGCTCGACTCAGATTGTGCTCTCTCTCTTCTGTCATCCCCCGCCAACTCCTCCAGCGTCGACGTGAGCCGGATGGTCGTCCAGCCCGCGGCGGAGCACATCCCCATGGCGCAGCCCCTCGTCCCCAGCAGCAGCCTCCAGCACCACCACCAGCACCACCAGTTCGGCAGCTCCCCGGGCGGCTGGTTCGCCTGCTCCCAGGCCGGCTCCAGCGCCGTCTCCGGCGCGGGCACCGGCACCGGCGGCTTCGCCTGCCCCGCCAGCGTGGAGAGCGAGCAGCTCAACACCGTCCTGGTGCCCAGCAACGACGCCGGCCACGAGATGAACTACCACGGCATCTTCCACGTCGGCGGCGAGGGATCCTCCGACGGGACGTCCCCTTCGCTCCCGTTCTCGTGGCAGTAGCTTCTTCCGTCCGGTTCAAGCGACCAGTAGTGATCGGTGTTCAGCTGTAGTGATCCTGTTCTTTCTGTGTTTATTTATTATTATTATTCTCCCTGTCATTTGCTCGTTTCTTCGTTTTGCATGCCTGATGCATGCAGCCTGAAAAAACTCGCATAAAATTAGTGCCGAATTTCTCCTGAAACCGTTCTGATATCTTACTGATTC | |||||||||
gi|37705209|gb|CF756128.1|CF756128 DSAF1_3_E08.g1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_3_E08_A TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): GAAATGAATCGCGATTAAATTGAACGTTAACCAGCGCCAGGCTAAACCAACAAAAGAATAGAGTTAGCCATAGTGTAGCAGCTACGCCTGTTTACAGGAAATTACAAAAGAAAAAAAAAAGGAAAGGCCGTAGGCAAAGTGAGAGAGATATACAGCTAAGCTAGCTACATGCTCTAAACACTTGCAGATAAATCAAAGTAGCGAGGTTCTCTTTAATTTTCTGCCACTGACAGCCAGGCATCAAAGAGCCACCGGCAGTGACACGGAACCTCCAGCAACAAGAATATTGTCACGTGTGTGTCTTCTAAGCGTGCCCCCAGAGGCCTCAAATTGGAGGCCCTGCTGCACAAAAGAATCGATTAGCCAGCCACTTCCTTTGCTGCCAATTCTAAAGTCAGTCTGCTGCCCCTGTGCTAATCAAATCAGCTTTGCCCACAATCACCACCTGATCCCTCTCTTCTGTCACCTCGTTTTGTAGTTAACAATGCAACTAAACAAAGAATTCGTCTGCTCAGTAGAGGTTAGCACCTGTGATTCCCTAAAATGTACGTGGAAAACCAAGCGACAACTTGTCCTCCCTTGCAAATCTCTGCCCC | |||||||||
gi|14593686|gb|BI141243.1|BI141243 IP1_53_B03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): GCAGAAAAATGATCCCTTCATATCAGCACTGAAAAAGGAACTGTCTGAACACACTACTGATGTGCATATTCAAAGTGATGCGCTTGATGGCATGTTCACTTTCTATGATGCAACGAAAGCAACTCTAAATGTGTACCAGGTTGCAAGTGTGACCTTTGATCTGCTGTTCCTTCTGGTGCTCGGTTCCTATCTGATCGTTCTCTTCTGTTTCCTAGTAATCACTACACGGGGTGTTGATGATCTCATTAACATATTCCGGCGGCCTCCATCACGCAAGCTCAAGGGGGCGTAGGCTATAGGTTATGTTTTGTGTATTAGCGCCAAGAGACGCGTGCCTAGTTATTAGAAGAAGAGATAGACATGAGGATGACAGGCAAGCTAGCTTCCCACAGCACATAGACATGTACTTTCAAAATTTTACTGTTCCCCCGCACTCCGGCCAATGTGAGTGGCTTCAAGTTCCAGAGCACAAAAAACAATTTCTTCCTTTTTTGTGTGAGGAATTGCGACTGTAATTTAGCTGTATGTTGGTT | |||||||||
gi|34515892|gb|CF487023.1|CF487023 POL1_41_G01.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_41_G01_A002 3', mRNA sequence TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): AATTGAACGTTAACCAGCGCCAGGCTAAACCAACAAAAGAATAGAGTTAGCCATAGTGTAGCAGCTACGCCTGTTTACAGGAAATTACAAAAGAAAAAAAAAAAGGAAAGGCCGTAGGCAAAGTGAGAGAGATATACAGCTAAGCTAGCTACATGCTCTAAACACTTGCAGATAAATCAAAGTAGCGAGGTTCTCTTTAATTTTCTGCCACTGACAGCCAGGCATCAAAGAGCCACCGGCAGTGACACGGAACCTCCAGCAACAAGAATATTGTTACGTGTGTGTCTTCTAAGCGTGCCCCCAGAGGCCTCAAATTGGAGGCCCTGCTGCACAAAAGAATCGATTAGCCAGCCACTTCCTTTGCTGCCAATTCTAAAGTCAGTCTGCTGCCCCTGTGCTAATCAAATCAGCTTTGCCCACAATCACCACCTGATCCCTCTCTTCTGTCACCTCGTTTTGTAATTAACAATGCAACTAAACAAAGAATTCGTCTGCTCAGTAGAGGTTAGCACCTGTGATTCCCTAAAATGTACGTGGAAAACCAAGCGACAACTTGTCCTCCCTTGCAAATCTCTGCCCCGAACTGCCCTGCTGCTCAATCTGCCTACTGGCACT | |||||||||
gi|7553383|gb|AW679616.1|AW679616 WS1_2_B01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): AGTCATGGCAAAGATGAGCCTTGGCCAATGAAAGGTCCGGACATGTCTATAACTGCTTCAAAATTTGATGGAGCACCGGATCTTCAGCGTGCTCTCTCTCTTCTGTCAGTTGGCGCTTGTGGATTGCCTGATCCTGTACATCAAACATCCTGCGTTATCCAATTCACTGGTGCCAGCGAGAACAGTGGTGACCTTCATTTATCACATGGGGGGAACTCTGGTCCAGCTTCATGCGCTGATGGACAGCATATAGCTGCTCAGTCTCAGTCTCAGCTGGTTCGTTTTACCATGGATACCAGCAACAATGTCTATGAGCCCAGTTTCTTCGGTGTAAACCAGATAAATTAAGCGTGAAAGATACACGCCAGTTGATCATTTGGATAAATAGCCATGAAGATGGCCTGGGCTTGTGCAGGAAGTTCTTCAACCAACCACCGGACATAAGGATCTCTCAGTTAATGTTATCTGCATATTTATCAGCTTATGTTTAATATGCAGTTCCAACCTGTGATTGACCCATTTTTTCTGTTGTTTTTTTTGCCCCCTGTGATGTGACGACTCTGGAACTTTCTAAGTGTGATACTATGTAGTTTTACACTTTTATTTTACTGCCCTGATGATGATGATGATGATGATGTCAACGGTTGGATATCTTTAAACTGTCCTTGATGAATCTGGACATGTTTTTTT | |||||||||
gi|14593578|gb|BI141135.1|BI141135 IP1_43_E12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): ATTTATGTTTGGATGTCAGCTAACATTTATCTATAACAGCAGCCTACGACCTGTTCCCTCTCTTTTGTTTATAGCGTTCTTAGTGCTACTCGTACTTGGTAAACTAGATAACTGTGGTAAGATGCCTGGGTAAGTAGATTTACGTGTATATAATACCAGATTGTAATTAATACAATAATCTTCTGAACATAGTATAATGGGGAGATAGGATTTCAAGTTACTATTAGTAGCCTCAGCTCAATAGCTGTAAGATAGCTCTGAATCTCATCATCCAGGTGCAAGAGCAACACACGGTGAGCACGGATTTCTCTCTCTTTATTTTTTCCCAAAGGAGATCTAGCAAGTTGATCATCATCTCTAGCAGCTTCTGTGGACACCTCTTTTAAATTCTGAAGAAGTGAAGAGGTTCTTATCATGTCATTGTCTCATTGATCAATAATTAGGAACTCTAAAGGGAAATTGTTCGAAAGAAGAGACTAAAGTGAAACAAATTAAAATTATGACAACAGAATATAACATTTCAAGTGACGTAGCA | |||||||||
gi|45961738|gb|CN132014.1|CN132014 OX1_3_C09.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_3_C09_ TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): GCTTCCTTCATCTCGAGCATCCTCTATCTCCGTCGTCGTCGCTCCTCAACTCGCCATGGGCAAAATTAAGATCGGAATCAACGGTTTCGGAAGGATCGGCAGGCTCGTGGCCAGGGTCGCGCTTCATAGCGAGGATGTCGAGCTGGTCGCCGTCAACGACCCCTTCATCACCACGGACTACATGACCTACATGTTCAAGTATGACACGGTGCACGGGCACTGGAAGCACAGTGACATCACCCTCAAGGACTCCAAGACCCTTCTCTTCTGTCAGAAGCCGGTCACCGTCTTTGGCATCAAGAACCCTGAGGAGATCCCGTGGGGCGAGGCTGGTGCTGACTATGTCGTGGAGTCCACTGGTGTCTTCACTGACAAGAGATAAGGCTGCGGCTCACTTGAAAGGTGGTGCCAAGAAAGTTGTTATCTCTGCCCCAAGCAAAGATGCGCCCAT | |||||||||
gi|45981534|gb|CN143545.1|CN143545 WOUND1_17_A03.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_17_A03_A002 3', mRNA s TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): AGAAGTTAAAGAAAAAAAAAAACCATTGGAATGAGGCAAAAACAAAAAATAAGTGCCAACTGCAAGCCCCCCGCGCTTGGCGATAGTATCAAAATGTCTTTGCTATCAATTACTTTATTATTGGTTCCCGATCCCACCTCTTTGTCCCAATCCATTTGTGCAAGGGGTGGGGATTTCTAGTTCCCTGGGGGCCAGGTATCATCCTTCAATGCTAAAATGTTGGACCTTTGGAGGACACCCTCAAGCCTTATTTGTCAAACCCCTTGGCGCCTAACAAATTGCCTGTGCAGATGAAGTTTAACAGATAATAATTGTTCTACAACAGCACCAGCCTTGTATTTACCAGAACTGCAATTCTACAGCAACTGTACCTGCGTGATACTGTTTCAATCTGAGCAAGGCACCTTGGCCTTTAGAGTTCAAATCAAACATTTGCTGAGACTTCTGCCTCAGGGTCCATACTTTCCTCCAGCAGTTGTGTTAGAGGTTCATCACTGTCCTCTTCTGGTTCATCACTGTCTGATTGGTCTCTCTCTTCTTTCACGGGACCCTTTTTGTT | |||||||||
gi|9851022|gb|BE595949.1|BE595949 PI1_50_D04.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGGGATCAGG EST sequence (targeted fragment marked with yellow): AAATTTGATGGAGCACCGGATCTTCAGCGTGCTCTCTCTCTTCTGTCAGTTGGCGCTTGTGGATTGCCTGATCCTGTACATCAAACATCCTGCGTTATCCAATTCACTGGTGCCAGCGAGAACAGTGGTGACCTTCATTTATCACATGGGGGGAACTCTGGTCCAGCTTCATGCGCTGATGGACAGCATATAGCTGCTCAGTCTCAGTCTCAGCTGGTTCGTTTTACCATGGATACCAGCAACAATGTCTATGAGCCCAGTTTCTTCGGTGTAAACCAGATAAATTAAGCGTGAAAGATACACGCCAGTTGATCATTTGGATAAATAGCCATGAAGATGGCCTGGGCTTGTGCAGGAAGTTCTTCAACCAACCACCGGACATAAGGATCTCTCAGTTAATGTTATCTGCATATTTATCAGCTTATGTTTAATATGCAGTTCCAACCTGTGATTGACCCATTTTTTCTGTTGTTTTTTTTGCCCCCTGTGATGTGACGACTCTGGAACTTTCTAAGTGTGATACTATGTAGTTTTACACTTTTATTTTAC | |||||||||