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mature miRNA: TGACAGAAGAGAGTGAGCA
species: Carthamus tinctorius
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|125374394|gb|EL388906.1|EL388906 CFFM26176.b1_O15.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM26176, mRNA sequ 

TGACAGAAGAGAGTGAGCA
|| ||||||||||.||. |
ACCGTCTTCTCTCGCTTTT

EST sequence (targeted fragment marked with yellow):
GGATTTAGGGTTTTTTTCGCTCTCTTCTGCCACTAAAACAATCTGGAAATCATCCCTAAAATGGTTGGCGAATTCTTCTACAGCTACTAGGCATCGTCCCAAACCAAAACCCTAAATGACAAGGGAGGATCTGGTTTATTCTAGTCACTTATTCCGTACAATTTGCAACATATCTCCTGAGATCAGACTCCATCCAATCAACACCTCCTCTAGTGCGAGAACGCTTCTGCAATATTCATGTTGCCAGGGGGGTAGTTAAGCTATGGATTGCGTCAAGGCTGCCACTCTTCTCAAGGGTTCATTGTGCCTTCGCCTCCTTCTATTCATTATCTGGGTATCTAATATCCTAGATGTAATTGCTGAGAAGCTGCCTCCCACGTCTCAACTAGTTAGCCTTCCTAGTTCTGGAATTTTCGAGCCTATAGAAATATCACCTTCAGTTTTACCACATTATCCCTTTACTGGGAAGACTTTGCCACCAATGTATCCATCCTTTCCAAAGACATACAAACCAGTCTTGACTGGTAGATGCCCATTTAATTTTTCTTCCATTTCAAGTATTATGGACAAAACAGCATCAGACTGTTCTCAACTTTTAGCACCCCTTGTAGGAAATGTAATATGTTGCCCACAATTTGCTAGTTCACTTCACATATTTCAAGGACATTACACTAAAAGTTCTGATAGTTTAGTTCTTCAAAATACCACTGCTGATGATTGTTTCTCAGATATTGTGGAAGTCTTGGCCAGCAGAGGCGCAAACAGCTCAGTGCCAGCTACG


gi|125374096|gb|EL388608.1|EL388608 CFFM25900.b1_H19.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM25900, mRNA sequ 

TGACAGAAGAGAGTGAGCA
.|| ||||||||| ||| |
GCTCTCTTCTCTCTCTCCT

EST sequence (targeted fragment marked with yellow):
TTTTGTTTGCTTTCTGCTTAATGGAGGGACCTTAAAATCCTCTCTCTCTTCTCTCGCTCTATACTCTCTCTCTAAAATTATACTTTCTCTCTCATCATCTACTAGCTCCTTCTTCGCTTAATTCGACCTCTTCCTTCGAAGATTATTGTTGCCAATCGGATCTTCATCCTCTCCGGCGCTTGCTTCACTCGTAATTTTTCATCGATTTTATATTAACAAGAAATTTTGAAGTCTTGGATCTGATGTCTCCGCCGCTCTTAGGTGTTGAAGGGGATGGACAGGGAAACGTCTCCTTACTAACCTCGGCTTCCTCTATGGAGTCAATTTTTCAAAAGAACCCCGGATTAACGGAGCGTAATTATCTGGGATTATCGGATTGTTCCTCGGTGGACAGCTCGGCTGTTTCCAGTGTCTCAGAGGTGAAAAGAAACAATCTAAACCTTAAAGCTACTGAATTGAGGCTTGGCCTTCCGGGGTCTCAGTCCCCCGAGCGCGACCCGGAAGTTAATCTGGCAACATCCGAGAGTCTTGATGAGAAACCGTTATTTCCGTTGCTTCCTTCCAAGGATGGGATCTGCTCGGGTTCGCAGAAGATTGTTGTTTCTGGAAATAAAAGAGGATTCTCTGACACGATCGACGGTTACTCAGAAACCAAAGGGTTTTCTGAAGGGAATTGGATGTTTGGTTCATCTGGGACCGATTCTGATGGTTCGAAATCTTTGGTCCAAGGGAAATTTGCTAGNCATGCAAATGGAAATGGCATGATATCA


gi|125387905|gb|EL401245.1|EL401245 CFFS12497.b1_A06.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFS12497, mRNA sequ 

TGACAGAAGAGAGTGAGCA
.|| ||||||||.|.|| |
GCTTTCTTCTCTTATTCCT

EST sequence (targeted fragment marked with yellow):
ACAGACGACCTCCATCCAATGGCTATGGCGATTCGTATTTCTTCCCAATCCTTATTCTCTTCTTTCGGTAATGCACGGGGTGTTCTTGCGCATTTTATGACAGGCAAATAATGCGTGCTTCGTGCAACTTCTTTCCGAATCATCAGATTGCTGAGCCTGTATAAGAAACCGTGTTATATATTTTTATGTTTATCGTCTTTGAAAAGAAACAGATGCTGTTCATCCGGCTAGCAAATATTGTAAATTTCATCGCAAAGCTATGACAATATCCTTTCGAGGCTCTGTAAAGCATGTACAGACAGTGTGCCGAATCTCAGTTCCTGGCTCCTCTCGGGTAAGTGTTGAGAATCCACCTTCAAAATCTCTAAAAGACAGGAAATTGGTCCCCGATTCAGACCCGCCAAGCACTAAAGATGTTAATCTTTTATATGAGTTTTTCGATAGAAGTACCAAACTTGTTGCTTTGACTGGAGCTGGGATAAGCACAGAGTGTGGAATTCCTGATTACAGAAGCCCTAATGGAGCTTATAGTACTGGCTTCAAACCGATTACACATCAGCAATTTATTCGTTCTAGTCGTGCACGAAGGCGGTATTGGGCAAGGAGCTATGCAGGATGGAGAAAGTTCAATGAAGCAAAGCCTAGTGTAGCTCATACTGCATTATCTTCTCTAGAAAAAGCCAGCCGAATAAGCTTTATGATTACACAAAATGTAGATAGGTTGCACCATCGTGCTGGTAGTAGCCCGCTTGAGTTACATGGGACTGTTTATGTGGTCAGTTGTGTGGATTGTGGGTTTTCTTTTCCACGGGAGTCCTTTTCAGAGCTATTGAAGTCC


gi|125358368|gb|EL372880.1|EL372880 CFFM10099.b1_F05.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM10099, mRNA sequ 

TGACAGAAGAGAG-TGAGCA
|.||||||||||| ||| ||
ATTGTCTTCTCTCTACTGGT

EST sequence (targeted fragment marked with yellow):
TCAAATTTTAGAAGCCATGGCTACAAACAATGTCGACTGTTCCACTAGCAGCATCACTCTTCTGGTGGTATGCATGGCGGTTGCCGCCATCGACGCGGCGGCAGCAGAACTTCAACGTTTCGATCATCCGCCATCGAAGGCCGATGGGTCTCTCGATATCGTGGTGATCGGTGATTGGTGAAGGAGAGGATTATACAACCAATCCGATGTTGCTTTTCAGATGGGGAAAATGGGAGAAAATTTGGATGCAGATTTCGTCAAATCAACCGGTGACAACTTCTATGAGGATGGATTAACTGATGAAGAAGATCCTTTGATTGTTGAATCATTTACTAATATATATACAGCATCGAGCTTACAAAAACAATGGAATGCAGTGTTGGAGAATCATGACTATAGGGGCAATGTGTTGGCACAGTTGAGCCCTACACATCACGCCGAGGAAGATCAAATGTCCTTGTCTGAAGACCTTTCTTGCAACTTCTGCAATTGTGCAATTTATCATAGCAGACGCAACATCCTGCCAAGATGGATAATGCACGGATCAACAATACTGTACGAATAACTGGAGAGCGGTACTTCCTATACTACATTACCCATGCAACGTCTCATATGGAGACGATATGGCACCCCATCAGTCAGGCGCCATATGAAACATAGCGATTGGTCATCTCTCTTCTGTTAGAGCTGGAACTCATGGAAATACCTCAGAGCTTGTAGATCAACTTTTGCCCATCCTTGACGCCAGGGAAGTAGATCTTTACATACATGTGCATGAC


gi|125382598|gb|EL395938.1|EL395938 CFFM7242.b1_D12.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM7242, mRNA sequen 

TGACAGAAGAGAGTGAGCA
.|| ||||||||||.|. |
GCTCTCTTCTCTCATTTTT

EST sequence (targeted fragment marked with yellow):
CGGATTGGATCTCCTCCTCTCGGACTTGGGCATTCAGAGGGGAAGATCATCACTTAATTTTTTTTTTACTCTCTTCTCTCGATTGATCTGTAACTCGGCTTATTGCAATTGTCTGATCTTGGCGGGAGAAAAAGGTTGAGTTGAAATAACGATGTTCGTCCCGCTTTATCACATGCGGATGAGGAGAAGACCCACTCCCGATTCCTGTTTGAAGATCCTCCCCGGGTCGTTTCGCTTCATCTCTCGGTCACCAACACCATGCGCCGCTGGATCTCTCACCTCCTGCGATAACTAGTTTGTTCCTGTACAGATCAACATTCGGGTCAATGGTGTTGAAGGACTCTCATTACAAGGTCCAAGCGCGACGTCTAGTGTGGAAATTCCCAACACGACCACTGAACNAGGCAAACTACCTGCTGTATTACCATATCCATCACATTGCTGTTACTGTTTGTCCTCACAGCTATCTGGTTCTACCGCTTTGACTCCCCGCGGTGATTGTGACTACCTGACCACCGCGAAAATCGGGCAATCCGGAGGCGCAACAAGGCTGGCGGCCATAAGTGATAGCGAAGATATCGCGTAGACGAGCTGCTCTGAATAAAACCGCATTAAACATAAGTATTCCTGTTGTGATGATCTCAAAACTGGATGGAGAGGCTCTGAACAAATCTCTATCAAGAGGAGGCGCAGT


gi|125382627|gb|EL395967.1|EL395967 CFFM7269.b1_J18.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM7269, mRNA sequen 

TGACAGAAGAGAGTGAGCA
|||||||| |||| . |||
ACTGTCTTGTCTCTTCCGT

EST sequence (targeted fragment marked with yellow):
CGGGGGAAGTTCAATATGCTCCTCCATCTGGTCCTGCCCTGCACAAGGAGTTATGAGCTTCTCTGCCTTCTCTGTTCTGTCATTTTGCCGCAATCACCATCTACTTCAGCTTTTCGGTCGCCCCCAATGGTTTACTGTCAGATGTCGATCACAGGCTTACGTTAAAAAGGTGAAAGAAGAACTGGAGAATAGAGGCTGCCAAATTAGAACTGGTTGCGCCGTTCAATCTGTCTCAAAACTCGATGATGATGATTGTGTAATAATCTGCGAAGATGGATCTGAAGAAAGGTATTCTGGATGCGTAATAGCTACACATGCCCCAGATACGCTCAAGATGTTAGGAGAAGAAGCTACACATGAAGAAAAAAGAATACTTGGCTCTTTTATCTACGTCTATAGTGATATTTTTCTACATCGTGACAAAAGTTTAATGCCTCAGAACCCATCAGCTTGGAGTTCATGGAACTTTCTTGGAACCATGGACAATAGACCTTGCTTAACATACTGGCTAAATGTGCTTCAGAATATTGATGATAAGGGGGGGCTACCTTATCTGGTTACCTTGAATCCACCAAGAACACCAGAAAGAATGTTGCTAAAGTGGAGGACTGGTCATCCAGTCCCATCAGTTGCTGCATCAAAGGCTTCCCTGGAACTTCATCACATTCAAGGGAAAAGAGGAATTTGGTTTTGTGGAGCATACCAAGGTTATGGGTTCCATGAGGATGGATCTAAAGCCGGTATGCTTGCTGCAAGTGGAGTTCTTAAATAG