| mature miRNA: TGACAGAAGAGAGTGAGCAC species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|45996430|gb|CN152438.1|CN152438 WOUND1_82_C02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_82_C02_A002 3', mRNA s TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): AAATGAAGCAAAATCCATAAATGATTATACCAAACATGTGCATCCAGAAAAGAAAAAATGTTACAGTTCAGTTCGCATATAAGAAGTCAAACACTCAAATACACAAGCAGTAGCAGCATGACGATACGACTAACACAATCTAACAGCGATACAGGTAAGCATGCGAAGTGAAAACTAAACTTGATCGCAAACACATGCAACAAGAGATCATTGAGCCATTCGCTTCTTCAATGCCTGCCTCGGGTTCTCGCCCTGCTCGCCTCCTCTGGGGTCGACGGGAACAGCTCTACATACCTCGTCCCAATGGTCATCTTATCCTTGCACATGGCCGTCTTGGCAACTTCAGCAGTGGGGAACTCAACAAAGGCTTCACCAGTAGCTTTCCCATCTGAGCGGTATGCAATATGCACATTCTCCTCTGTCAGCTCATACTCCAGGAAGAACTTGATGATGTCCTCAGTGGTGGCAGAGTAGGGAAGCCCACGGAGCTTCAGCACCTCAGTGTACTCCATACTGCCCTTGTCTTCAGCCGGCTTCTTAGACCTTGGAGGAGGTGGGGAGCGGCGGTACTCTGACTCAAAGTAACCACCCTGGCTCACCTCGTTGGCTATTGCACAGTAGTACTCCTGCTTCTTGCATCTGAACACCTCAACATATCTCCGGCCCATGTTCTGCCTGTTGCGATGCAGCGCANATTCTGCTTGCATAGCTGTTGGGAAGACCACAAAAGCCTCACCAGTGAAGCGCCCATTCTTGTTAACCAGGAGGCAGTCCACTATGTCCAGTCCCACAAAGAACTTGCAGATGTCAATGTCGTTGCAATCAAAAGGGAGACCACGCAGCCGGACACCTGGGAAGTTTTGGATGCCAGTGCTAGCCCCTGCACCAG | |||||||||
gi|13585425|gb|BG556427.1|BG556427 EM1_66_H12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): ATGCTAGTGAAGTGTATTATGCCAAACTCCGTGCTGCGCATGGAAAGCGATTTGCCCCCGAGGACGCGCAACCCTTGTCTCTGGCTGGGAAGAAACCTAAGGGCATTCGAAGTGTCAGTCCGGATGAGCCGGTTATCAGCCAAAGCATCCGAGCCAGTGACGCCTGGACGGATGATCTGGAGCCTTACTGAGCTACCTAATAAAGCCCCAAGAATGAGGTGTTCTCTCGCTTGCACAGTGCCTCGGATGACTATCACGTGAACGTTTCATTTTCCCTCTTGTTTTCGGTGTCAAAAATTAGGGCTCATACCTTCTACTCTTCTGACTATGTCAGTTAATCTGTACAGAACTTTTTCTATGTCCTGATGAGCAACGGAATGCTCAAGATGACATGACCTATTTTCGTCCAAGTTTTCTTGTCTATATGACTTGGCCTCTTTTATTAATCTTCTCTGTTTGTATGATTTGGGTATTCTGTTTTTGTTTACTTTCAGTGGACTTTTACTTTTCTTCTTTCTTCTTTTTTTTTTTCTCCGTTATCTTGCGCCTTTGCGTTTGTCTTCGTCTGCTTCTTTCTTTTCTCTCGGTATGGTGTTTATTCTCTTCTGGCTTCTTTGGTCCGGGTATTTCCCGCTATACTTGTATGATTCGAGATGGTATGTTTGCTATGTTTTGTTATGCCTTTTCTTAGGTTTGATATCAGCGCAGCGTAGTATCA | |||||||||
gi|34515892|gb|CF487023.1|CF487023 POL1_41_G01.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_41_G01_A002 3', mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): AATTGAACGTTAACCAGCGCCAGGCTAAACCAACAAAAGAATAGAGTTAGCCATAGTGTAGCAGCTACGCCTGTTTACAGGAAATTACAAAAGAAAAAAAAAAAGGAAAGGCCGTAGGCAAAGTGAGAGAGATATACAGCTAAGCTAGCTACATGCTCTAAACACTTGCAGATAAATCAAAGTAGCGAGGTTCTCTTTAATTTTCTGCCACTGACAGCCAGGCATCAAAGAGCCACCGGCAGTGACACGGAACCTCCAGCAACAAGAATATTGTTACGTGTGTGTCTTCTAAGCGTGCCCCCAGAGGCCTCAAATTGGAGGCCCTGCTGCACAAAAGAATCGATTAGCCAGCCACTTCCTTTGCTGCCAATTCTAAAGTCAGTCTGCTGCCCCTGTGCTAATCAAATCAGCTTTGCCCACAATCACCACCTGATCCCTCTCTTCTGTCACCTCGTTTTGTAATTAACAATGCAACTAAACAAAGAATTCGTCTGCTCAGTAGAGGTTAGCACCTGTGATTCCCTAAAATGTACGTGGAAAACCAAGCGACAACTTGTCCTCCCTTGCAAATCTCTGCCCCGAACTGCCCTGCTGCTCAATCTGCCTACTGGCACT | |||||||||
gi|14365556|gb|BG947367.1|BG947367 IP1_4_F04.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CTCACCCCCGTGCTCGACTCAGATTGTGCTCTCTCTCTTCTGTCATCCCCCGCCAACTCCTCCAGCGTCGACGTGAGCCGGATGGTCGTCCAGCCCGCGGCGGAGCACATCCCCATGGCGCAGCCCCTCGTCCCCAGCAGCAGCCTCCAGCACCACCACCAGCACCACCAGTTCGGCAGCTCCCCGGGCGGCTGGTTCGCCTGCTCCCAGGCCGGCTCCAGCGCCGTCTCCGGCGCGGGCACCGGCACCGGCGGCTTCGCCTGCCCCGCCAGCGTGGAGAGCGAGCAGCTCAACACCGTCCTGGTGCCCAGCAACGACGCCGGCCACGAGATGAACTACCACGGCATCTTCCACGTCGGCGGCGAGGGATCCTCCGACGGGACGTCCCCTTCGCTCCCGTTCTCGTGGCAGTAGCTTCTTCCGTCCGGTTCAAGCGACCAGTAGTGATCGGTGTTCAGCTGTAGTGATCCTGTTCTTTCTGTGTTTATTTATTATTATTATTCTCCCTGTCATTTGCTCGTTTCTTCGTTTTGCATGCCTGATGCATGCAGCCTGAAAAAACTCGCATAAAATTAGTGCCGAATTTCTCCTGAAACCGTTCTGATATCTTACTGATTC | |||||||||
gi|9851022|gb|BE595949.1|BE595949 PI1_50_D04.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): AAATTTGATGGAGCACCGGATCTTCAGCGTGCTCTCTCTCTTCTGTCAGTTGGCGCTTGTGGATTGCCTGATCCTGTACATCAAACATCCTGCGTTATCCAATTCACTGGTGCCAGCGAGAACAGTGGTGACCTTCATTTATCACATGGGGGGAACTCTGGTCCAGCTTCATGCGCTGATGGACAGCATATAGCTGCTCAGTCTCAGTCTCAGCTGGTTCGTTTTACCATGGATACCAGCAACAATGTCTATGAGCCCAGTTTCTTCGGTGTAAACCAGATAAATTAAGCGTGAAAGATACACGCCAGTTGATCATTTGGATAAATAGCCATGAAGATGGCCTGGGCTTGTGCAGGAAGTTCTTCAACCAACCACCGGACATAAGGATCTCTCAGTTAATGTTATCTGCATATTTATCAGCTTATGTTTAATATGCAGTTCCAACCTGTGATTGACCCATTTTTTCTGTTGTTTTTTTTGCCCCCTGTGATGTGACGACTCTGGAACTTTCTAAGTGTGATACTATGTAGTTTTACACTTTTATTTTAC | |||||||||
gi|37758764|gb|CF772403.1|CF772403 DSBF1_34_E12.g1_A010 Drought-stressed before flowering Sorghum bicolor cDNA clone DSBF1_34_E1 TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): ACCAAACATGTGCATCCAGAAAAGAAAAAATGTTACAGTTCAGTTCGCATATAAGAAGTCAAACACTCAAATACACAAGCAGTAGCAGCATGACGATACGACTAACACAATCTAACAGCGATACAGGTAAGCATGCGAAGTGAAAACTAAACTTGATCGCAAACACATGCAACAAGAGATCATTGAGCCATTCGCTTCTTCAATGCCTGCCTCGGGTTCTCGCCCTGCTCGCCTCCTCTGGGGTCGACGGGAACAGCTCTACATACCTCGTCCCAATGGTCATCTTATCCTTGCACATGGCCGTCTTGGCAACTTCAGCAGTGGGGAACTCAACAAAGGCTTCACCAGTAGCTTTCCCATCTGAGCGGTATGCAATATGCACATTCTCCTCTGTCAGCTCATACTCCAGGAAGAACTTGATGATGT | |||||||||
gi|37705209|gb|CF756128.1|CF756128 DSAF1_3_E08.g1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_3_E08_A TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GAAATGAATCGCGATTAAATTGAACGTTAACCAGCGCCAGGCTAAACCAACAAAAGAATAGAGTTAGCCATAGTGTAGCAGCTACGCCTGTTTACAGGAAATTACAAAAGAAAAAAAAAAGGAAAGGCCGTAGGCAAAGTGAGAGAGATATACAGCTAAGCTAGCTACATGCTCTAAACACTTGCAGATAAATCAAAGTAGCGAGGTTCTCTTTAATTTTCTGCCACTGACAGCCAGGCATCAAAGAGCCACCGGCAGTGACACGGAACCTCCAGCAACAAGAATATTGTCACGTGTGTGTCTTCTAAGCGTGCCCCCAGAGGCCTCAAATTGGAGGCCCTGCTGCACAAAAGAATCGATTAGCCAGCCACTTCCTTTGCTGCCAATTCTAAAGTCAGTCTGCTGCCCCTGTGCTAATCAAATCAGCTTTGCCCACAATCACCACCTGATCCCTCTCTTCTGTCACCTCGTTTTGTAGTTAACAATGCAACTAAACAAAGAATTCGTCTGCTCAGTAGAGGTTAGCACCTGTGATTCCCTAAAATGTACGTGGAAAACCAAGCGACAACTTGTCCTCCCTTGCAAATCTCTGCCCC | |||||||||
gi|14365557|gb|BG947368.1|BG947368 IP1_4_F05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CGCGGCCCCGCCGCCCGAGAGCAGCAGCAGCAACAAGATGTTCTCCGACGGGCTCACCCCCGTGCTCGACTCAGATTGTGCTCTCTCTCTTCTGTCATCCCCCGCCAACTCCTCCAGCGTCGACGTGAGCCGGATGGTCGTCCAGCCCGCGGCGGAGCACATCCCCATGGCGCAGCCCCTCGTCCCCAGCAGCAGCCTCCAGCACCACCACCAGCACCACCAGTTCGGCAGCTCCCCGGGCGGCTGGTTCGCCTGCTCCCAGGCCGGCTCCAGCGCCGTCTCCGGCGCGGGCACCGGCACCGGCGGCTTCGCCTGCCCCGCCAGCGTGGAGAGCGAGCAGCTCAACACCGTCCTGGTGCCCAGCAACGACGCCGGCCACGAGATGAACTACCACGGCATCTTCCACGTCGGCGGCGAGGGATCCTCCGACGGGACGTCCCCTTCGCTCCCGTTCTCGTGGCAGTAGCTTCTTCCGTCCGGTTCAAGCGACCAGTAGTGATCGGTGTTCAGCTGTAGTGATCCTGTTCTTTCTGTGTTTATTTATTATTATTATTCTCCCTGTCATTTGCTCGTTTCTTCGTTTTGCATGCCTGATGCATGCAGCCTGAAAAAACTCGCATAAAATTAGTGCCGAATTTCTCCTGAAACCGTTCTGATATCTTACTGATTC | |||||||||
gi|7553383|gb|AW679616.1|AW679616 WS1_2_B01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): AGTCATGGCAAAGATGAGCCTTGGCCAATGAAAGGTCCGGACATGTCTATAACTGCTTCAAAATTTGATGGAGCACCGGATCTTCAGCGTGCTCTCTCTCTTCTGTCAGTTGGCGCTTGTGGATTGCCTGATCCTGTACATCAAACATCCTGCGTTATCCAATTCACTGGTGCCAGCGAGAACAGTGGTGACCTTCATTTATCACATGGGGGGAACTCTGGTCCAGCTTCATGCGCTGATGGACAGCATATAGCTGCTCAGTCTCAGTCTCAGCTGGTTCGTTTTACCATGGATACCAGCAACAATGTCTATGAGCCCAGTTTCTTCGGTGTAAACCAGATAAATTAAGCGTGAAAGATACACGCCAGTTGATCATTTGGATAAATAGCCATGAAGATGGCCTGGGCTTGTGCAGGAAGTTCTTCAACCAACCACCGGACATAAGGATCTCTCAGTTAATGTTATCTGCATATTTATCAGCTTATGTTTAATATGCAGTTCCAACCTGTGATTGACCCATTTTTTCTGTTGTTTTTTTTGCCCCCTGTGATGTGACGACTCTGGAACTTTCTAAGTGTGATACTATGTAGTTTTACACTTTTATTTTACTGCCCTGATGATGATGATGATGATGATGTCAACGGTTGGATATCTTTAAACTGTCCTTGATGAATCTGGACATGTTTTTTT | |||||||||
gi|45948447|gb|CN124703.1|CN124703 RHOH1_6_H10.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_6_H10_A TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): AAACAGAACATGAATAAACTAAAATGACGCATAATCCATAAATGATTATACCAAACATGTGCATCCAGAAATGAAAAAATGTTACAGTTCAGTTCGCATATAAGAAGTCAAACACTCAAATACACAAGCAGTAGCAGCATGACGATTCGACTAACACAATCTAACAGCGATACAGGTAAGCATGCGAAGTGAAAACTAAACTTGATCGCAAACACATGCAACAAGAGATCATTGAGCCATTCGCTTCTTCAATGCCTGCCTCGGGTTCTCGCCCTGCTCGCCTCCTCTGGGGTCGACGGGAACAGCTCTACATACCTCGTCCCAATGGTCATCTTATCCTTGCACATGGCCGTCTTGGCAACTTCAGCAGTGGGGAACTCAACAAAGGGTTCACCAGTAGCTTTCCCATCTGAGCGGGATGCAATATGCACATTCTCCTCTGTCAGCTCATACTCCAGGAAGAACTTGATGATGTCCTCAGTGGTGGCAGAGTAGGGAAGCCCACGGAGCTTCAGCACCTCAGTGTACTCCATACTGCCCTTGTCTTCAGCCGGCTTCTTAAACCTTGGAGGAGGTGGGGAGCGGCGGTACTCTGACTCAAAGTAACCACCCTGGCTCACCTCGTTGGCTATTGCACAGTAGTACTCCTGCTTCTTGCATCTGAACACCTCAACATATCTCCGGCCCATGTTCTGCCTGTTGCGATGCAGCGCAAATTCTGCTTGCATAGCTGTTGGGAAGACCACAAAAGCCTCACCAGTGAAGCGCCCATTCTTGTTAACCA | |||||||||
gi|160712826|gb|EH409419.1|EH409419 RTHAIR1_37_F06.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_3 TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): AGAAACTTATCATTGGTCCCCCAAGTGCCGATAGAATCCAACTTCCTGATGGACGGCATCTGGCTTATGAAGAACAAGGTGTCTCAGCTAACAGAGCAAGATTTTCACTGATTGCTCCTCATTCTTTTCTGTCATCAAGGCTGGCAGGAATCCCTGGAATCAGTGCATCTCTTCTGGAAGAATTTGGAGTACGACTGGTGACCTATGATCTTCCTGGTTTTGGTGAAAGCGATCCACACCTAGGCCGGAATCTCAATTCTTCTGCACTGGACATGCTCTATCTGGCTAATGCTCTCAATATTCCGGAAAAGTTCTGGGTTGTGGGCTATTCTGGAGGTGGCATGCATGCCTGGAGTGCTCTTCGTTACATTCCTGATCGAGTTGCTGGTGCAGCAATGTTCGCACCTATGGCAAATCCATATGACTCCAAGATGACCAAAGACGAGAGGCGTAAAACATGGGATAGTTGGTCAACGAAACGGAAACTGATGCACATTTTAGCTCGGAGGTTTCCATCACTGCTACCGTTCTTTTATCGCCAAACCTTCCTTTCTGGAAAGCAAGGACAACCTGAGAGTTGGTTGTCACTGTCATTGGGGAAGAAGGACAAAACTTTACTG | |||||||||
gi|34512495|gb|CF483626.1|CF483626 POL1_23_D01.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_23_D01_A002 5', mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GATGCTCTCATATCCCGAGGTTAGTAACATGGTACCAGAGCCATGGATTAGGGTTAGGTTTAGCCTCCTCTAAATCACCCACGATCCATTTTTTTTTACTTGGGATTCGTCCGCTGTTCTTCGTTGCGGCCGTTGCCGCCCATTCATCCCGTGGCCCGTCGCCACTTCATCTTCGCGTGGCCCGTCGCCGCGCCGTCCCTCCGTGCGGCCCATCACCGCGCCCTTCTCCGTCCGCCGTCCGCCTGCGATCCGCGCGTCGGGACTCCCGTGGATCGTCCTCGTTCCGCATCCGCGGGTGGCCTGTCGACCGACCGCGCGCCGCGCCGTTCCCGTCCGCTACTTCACCCGCGGGCGGTTCGTCACGCGTCGATCGGTCTACACGCGCGCCTGCGGGTCTTCACGCGCGGAACATCACGCGCCACTTCTTCCTCCGCGGGAGTCCAGCGGATCGACAACTCCCAGCCGCCGGTCCTCTGTTCCCAGCCGCCGGTCCTCTGTTCCTGCTCCTGCTCGGGTCTGCCTGCTTCTGCTGCTGGTCATTCTCCTCTGTCAGGAAACAGAGGAAACAGAGGATACTTGTGGTGCTTCGGGACTGCAAATCTTCATCAATCCTCTGTGCTGGTGGTAACTCTTCTTTTTAACATCAACAATGTCTCAGTCTGAGAAGATTAATGCAATTGTCATCAATATTACTCTTGATGGTCCGAATTATTTGGAATGGTCCTTTTGTGTTGAACTGCATTGAGAGGTGTTGGTCTTCATTCTCACTTAACTGATGATCCACCAACTCTC | |||||||||
gi|7660905|gb|AW747167.1|AW747167 WS1_66_F11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CACGGGGTGGAGGCGGGCAACAATCCCGCGGAGCTGGCGGCGGCCGTGGGTGGCGCCTCCAGCAGCTCCTCCCGGGCGGCGGCGAGGAGCAGGGTCGCGGCGGCTGCTGGCGCCTCCGGCTCCTCCCCGGTGGCGGCGGCGAGGAGCAGGGGCGCCGGCGCCGTGGCCGCGGCGGCGGGCGGCGGCGGTGGCGTCGGGCCGAGCTGCCAGGTGGAGCGGTGCAACGCCGACATGGGCGTGGAGAAGCGGTACAACCGGAGGCACAAGGTGTGCGACGCGCACCGCAAGGCGTCCGTCGTCCTCCTCGCCGGCCTCCGCCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCACGAGCTGTCGCACTTCGACGACACCAAGCGGAGCTGCCGCCTGCGCCTGGCGGGGCACAACGAGCGGCGCCGGAGGAACCCGGCGGAGGCGCACGACCAGAACGGCGGCCGGGGCGACCCGGGGAACCACCACCTCCACATCAGATCAGATAAACCTATCTAAGCATGCTCTCTCTCTTCTGTCATGCAGGATGCACCTAGCATCACCGATCGATAATCCGATTTGTGTCTCAGTGCCTACCCTGTCCTGTGTCTGTGTGTTGCGTATGGTACGTGCTGCTGCTACTACGTGCTAACTT | |||||||||
gi|57806599|gb|CX607879.1|CX607879 ANR1_31_G07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_31_G07_A002 3', mRNA sequ TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GAAGCAAATCCATAAATGATTATACCAAACATGTGCATCCCGAAAAGAAAAAATGTTACAGTTCAGTTCGCATATAAGAAGTCCAACACTCCAATACACAAGCAGTAGCAGCATGACGATACGACTAACACAATCTAACAGCGATACAGGTAAGCATGCGAAGTGAAAACTAAACTTGATCGCAAACACATGCAACAAGAGATCATTGAGCCATTCGCTTCTTCAATGCCTGCCTCGGGTTCTCGCCCTGCTCGCCTCCTCTGGGGTCGACGGGAACAGCTCTACATACCTCGTCCCAATGGTCATCTTATCCTTGCACATGGCCGTCTTGGCAACTTCAGCAGTGGGGAACTCAACAAAGGCTTCACCAGTAGCTTTCCCATCTAAGCGGTATGCAATATGCACATTCTCCTCTGTCAGCTCATACTCCAGGAAGAACTTGATGATGTCCTCAGTGGTGGCAGAATAGGGAAGCCCACGGAGCTTCAGCACCTCAGTGTACTCCATACTGCCCTTGTCTTCAGCCGGCTTCTTAAACCTTGGAGGAGGTGGGGAGCGGCGGTACTCTGACTCAAAGTAACCACCCTGGCTCA | |||||||||