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mature miRNA: TGACAGAAGAGAGTGAGCACA
species: Helianthus annuus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|90469686|gb|DY931544.1|DY931544 CHAZ6448.b1_P04.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ6448, mRN 

TGACAGAAGAGAGTGAGCACA
||||||||||||| ||||| |
ACTGTCTTCTCTCCCTCGTAT

EST sequence (targeted fragment marked with yellow):
AGCATTTCTTTGAGAATAGTGAGTGAGTTGATGGGGTGTGGTGGTGAAGATGGTGTTGGTGGAGGAGGAAGTTGTTTGAATGTGGATGTGAAGAAGAAGAAAGCATGTCACACAGGCGGTGGATCGTCTAGTGTAACGCGGTGCTGCCAGGCGGAGAAATGTACGAGTGATTTAGCCGAGGCCAAGCCGTATCATCGAAGGCACAAGGTGTGTGAGTATCATGCAAAGGCTCAAGCAGTTGTTGTTGCCGGTATGCACCAAAGATTTTGTCAGCAATGTAGCCGGTTTCACGAGCTATCGGAATTTGATGAAGCGAAAAGAAGTTGTAGGAGGCGTTTAGCGGGGCACAATGAAAGGCGAAGGAAGAACAACTCACTGGAGTTCAAGAAGGAACTTGTTTGTGTGCACAGCCAAAGGTTTATCCAAGAGAATCCAACTTAAACTAGATGGAAAACCTAAATAAAGGAATCTATGCTCCCTCTCTTCTGTCACTTCCTATCCTAGTACTTCAAAACTCTTGTAGTTCTAATAATGTTGTTGTGTTTGGTAATGAAGGTAATGTATAATTAATTATTCTTGTTTGACTTTCTAAAGTCATATTCACCGTTGAATATAACCAATAAACAATACATGAAAGAATGACCTCAGATTATAGTTTGACTTTCCTAAAGTCAAAATACTGAAC


gi|90467030|gb|DY928909.1|DY928909 CHAZ3643.b1_F23.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ3643, mRN 

TGACAGAAGAGAGTGAGCACA
||||||||||||| ||||| |
ACTGTCTTCTCTCCCTCGTAT

EST sequence (targeted fragment marked with yellow):
TATGAGTTGGTGAAATACCGCAGAGTATACATGGTGTGTAAATACCGCGTCAGTTGCCATTCTGTATTTGTGCTGCACAACTGTGCATGTAACACATCCGGGCGATCCTCTATCGTATCACGCTGCTGTTCGAGCTCGAAATGTACTGAGTCATATTATCCGACTCCAAGCTGTATCACTCACAAGCCACTCGGGGTGTCAGTATCTTGCACAGCCTCCAGCAGCTTGCGCTGCTCTAATGCCCACTAGATTTTGTCAGCCAAGATGCCGGTTCACGAGCTATCGGAATTTGATGAAGCGAAAAGAAGTTGTAGGAGGCGTTTAGCGGGGCACTATGAAAGGCGAAGGAAGAACAACTCACTGGAGTTCAAGAAGGAACTTGTTTGTGTGCACAGCCCAAGGTTTATCCTAGACAATCCAACTTAAACTAGATGGAAAACCTAAATAAAGGAATCTATGCTCCCTCTCTTCTGTCACTTATCCTAGTACTTCAAAACTCTTGTAGTTCTAATAATGTTGTTGTGTTTGGGACTGAAGGTAAT


gi|22385698|gb|BQ968177.1|BQ968177 QHB33B17.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB33B17, mRNA sequenc 

TGACAGAAGAGAGTGAGCACA
||||||||||||| ||||||
ACTGTCTTCTCTCTCTCGTGC

EST sequence (targeted fragment marked with yellow):
CTGTTAGAATTTGATGGGAAGAAGCGGAGCTGTCGCCAGAGGCTTTCTGACCACAATGCCCGTCGCCGAAAGCCACAAAAAGAAAAAGAAACTGTCCACTTTAACTCAAGAAGTCAGTCTTCATCATTTTATGATGGGCAACATCAAATAAGTTTTGTGTCTAACAATGTTCCTGAACTGGTTCAACCCGAACCTGCTTTGAACTCTATTTGGGAAACCACACGCAATTCCCAGCACACAGCCGGTGTTTTTCATCAAGGTTTGTTTTCCTAATTACTCTATCGACAGTAGTTTTGATAATTTATCGTATGATTAGTTACTTTCGTATGCATGTTCCAACGCAAAAGCATACCGTGCTCTCTCTCTTCTGTCAAACAATTCATGGGGTTCATGTGAGTCGGACTTCAGCGCACTTGACCAACCCATGCATGCAAATGGTACCACTATGGCGCAACATGGGATGCATTCCGCTCACCACAATTTGTCACCTGAGAACTGGCAAGTTGACCCCCACATTCAAGAATCTCATATTCTCAAAGAACCGTATGGATATTATTAATATGTGAATTAAATTG