miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGACAGAAGAGAGTGAGCACA
species: Hordeum vulgare
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|161458290|gb|EX598089.1|EX598089 HDP11D21T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP11D21, mRNA sequence

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||||
ACTGTCTTCTCTCTCTCGTGT

EST sequence (targeted fragment marked with yellow):
ACAGCACGCACCAGGTTAACTTCGGCGGCGCCACGTCGTCATACTCCAACGAAGGCCGGCGCTTCCCCTTCCTCCACGAAGGAGACCAGATGAGCTTCAGCACCGGCGCGCCAGCACTCGAGATCCCCGTGTGCCAGCCTCTCCTCAAGGCCGTCGCCCCGCTGCCGCCGCCGCCCGAGAGCAGCAGCAGCAACAAGATGTTCTCCGATGGACAGTTGACGCACGTGCTCGACTCCGACTGTGCTCTCTCTCTTCTGTCATCCCCGGCCAACGACAACGAGATGAACTGCCACGGGATCTTCCACGTCGGCGCCGATGGCTCCTCCGAGGGCACGTCGCCGTCCCTCCCGTTCTCATGGCAGTAGGAGTCTCGAGTGAAGATCAGAGGCTGTTCTTGGGTTCTTTTGGTGATCAGTAGGCAGTAGCTAGCTGTGCCCCTTTTAGTGATCAGGCCTACGTCCCGTTCTTTCTGTGTTTATTCTCTCTCCTTTTCACGTTTCTATGTCTTGGACTTGATCTCTCGCTATCAGAATGAATAACTTTGCATGATTC



gi|161458477|gb|EX590403.1|EX590403 HDP12I21w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP12I21, mRNA sequence

TGACAGAAGAGAGTGAGCACA
||||||||||| | ||||||
ACTGTCTTCTCCCTCTCGTGC

EST sequence (targeted fragment marked with yellow):
GCCAGAGGCGACTGTCTGATCACAATGCTCGGCGCCGGAAGCCACAGCCGGATGCATTCTCCTTTGCACCGGCAAGGCTACCGTCGTCATTGATGTTTGATGATAGACGACAAATAAGTTTTGTCTGGGATAAAGATCCACTTAGCCATGGAAGGCCTTTCCCATGTTCTCCATGGGACAGCCCATCTGACTTCAAGCCCCCACAAGTGAAGGAAATAAGAGAAGTGTCAATCAATGGACAAGTTCATTTTGATAAATCTCATCTACCCAATGCTGTTCCAGCACTGAGTCATGACATAGCTGAGCTGCTACCAATGAAAGGTCCGGGCGCATCTGCAACCGCTTCGAAATTAGGTGGAGCACCGGATCTTCAGCGTGCTCTCCCTCTTCTGTCAGCTAGTTCTTGTGGATTACCTGATCCAGTACAGCAAGCATCTTGTCTCGTCCAATTCACTGGTGCCAGCCAAAACAGCCGGGGTCTGCCTTCACCACATGGAGGGAGCCCTCCGTCGGCATCCTGTGCCGAGGGACAGCCCATGGCTCCATCACCTCAGTTCGTCCGTTTCACGATGGATGGCGCCAGCAGTGGCTATGAATCCACTTTCTTCGGCGTAAACCGGATGAATTGATACGCGAGACGTATGCGCCACTGTATGATTTGGATCTACGGCATGGAAGAGCTTATGCAAGAACTGCTCCC



gi|217061961|gb|GH228608.1|GH228608 HVSMEn0021E17f2 Hordeum vulgare rachis cDNA library HVSMEn (HVcDNA0015)2 Hordeum vulgare sub

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||
ACTGTCTTCTCTCTCTCGTAC

EST sequence (targeted fragment marked with yellow):
TTCAAAGTTACACACACAAAAGCTCCTTGGTTAAAGCCAACAACTGCTGCAGGTGTTGATGGGATGCATTTATCTAGTCAGCAGATGTCGGACAATGTTATGCCGCATGGTGCACATCATGGTTTCGATGGGTTCATGGCATTCAAGGGAACTTCTACAAAGTTCCCTAATCAAGGTGTCCAAGCTTCCGCTGTCGCCCCCAACTCCAGTGGCGCCCCGGATCTTCAGCATGCTCTCTCTCTTCTGTCAAGCAACCCAGTGGGTGCTGCCAACCTCCAGCCAACTTCCCAGATGCACTCTGGGGTGGCTGCCATTGCCGGCACCCCCAACCCCGCGATGCACGTGCTGGGATCATCGGCAGGGCTCTGGCTAGACGGCGGGCCACCCCTAGATGATCACCCGCGGTTCCAGGTCTTCGAGCGCTTGGGGGACCACGACAGCGAGCTCCAGCTCCCAAAGCCTTCCTACGACCACGCCTCGCACTTCGACCGGATGCACTGATGACGACGGCGCTCCGATCCGGTCACCCCGCTCGGTGCGTGATTTTATCACGCGATCGACGCCGTTTGTTCGGTCTGAAACCCGGGATCCTGCATTTTCTTTGCTTGGTGCCGTTGCCTGCCTA



gi|24329126|gb|CA032492.1|CA032492 HX13D15r HX Hordeum vulgare subsp. vulgare cDNA clone HX13D15 5-PRIME, mRNA sequence

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||||
ACTGTCTTCTCTCTCTCGTGT

EST sequence (targeted fragment marked with yellow):
CGGGCTGAGGGCTCCTGCACTCAAGGCGCCGCTCGTCGTCGTCGCCGGCATCGAGCAGCGCTTCTGCCAGCAGTGCAGCAGGTTCCACCAGCTACCTGAATTTGACCAAGGAAAACGAAGCTGCCGCCGACGCCTCGCGGGTACAATGAGCGCCGGAGGAAGCCGCCGCCCGGACCTATGTCGACACGCTATGGCCGGCTTGCTGCGTCCTTCAACGAAGATCCAGGCAGGTTCAGAAGCTTTCTGCTGGATTTCTCGTACCCGAGGGCCCCGGCCGGCGTGAGGGACCCGTGGCCGGCCGTTCAGCCCGGCGACCACCGCATGCCTGGCACCACCCACTGGCAGGGCCAGGGCAGCCATCATGAACAACACCACGCTCATCGCAGTGCAGTTGCGGGATACGGCGACCACCACGCGTACAACGGCCAGGGCAGCAGCTCGGGGGGAGGCGGGGCGCCGATGATCCCGGCGGGCTTCGAGCTCCCCTGGACAAGATGGCGGGCGTCGCCGCCGACTCCAGCTGTGCTCTCTCTCTTCTGTCAACTCAGCCATGGGATAGTAGTGCCCACAGCTCCAGCCACATCCGGTCCCCGGCAATGTCGACGGCCAGCGCCTTCCAGGGCAGCCCCGGTGGCGCCCTCCGTCAT



gi|9418682|gb|BE420839.1|BE420839 HWM003.A12 ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM003.A12,

TGACAGAAGAGAGTGAGCACA
|||||||||||||..|. ||
ACTGTCTTCTCTCGTTTTAGT

EST sequence (targeted fragment marked with yellow):
GTTACGGATTGCCTCGCACGTAGTTCTACATAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGTCATCGACCAACATAGCTCAGTTGCTGCTTTGTTAACGAATGAATGCTTATGGTTTTGTTATTAGTAACAAAAATAAGTTAGTTGCATGAACTGCCTGTCCTGATTTTGCTCTCTTCTGTCAGGATGGGCGCATTGACTATGGAGAATTTGTTGCCATGATGACCAAAGGCAACATGGGGGTCGGGCGAAGAACAATGAGAAACAGCCTGAATATCAGCATGAGAGACGCACCTGGTGCAATCTAGACTTCCACGATGTATATACAGCTTGTGGCTTTAGCTTCTTCCCGTCTTCCCGCTCCATCGAAGCCTTCCTGCAAATTATCGAATCTTGTAAAATGCCTGTGTGGATGTGTGTTTCTGTGGATTCTGATTTAGCTCGTCAATTGATTCGACGGAACGCATGCTAAGCTGGGTTGAAATGATCTCACACGTTGCTGCTGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAACCAANCNAGAGGGAAAACACCACACCCCACAACACCACACAAACACAACCAACCACCCACCAACAACCACCCCCCCCCAAAAAAAAAACCCACAACACCCCCACCCAACCCACAAACAAAACACCACAACCACACCACCACCTTTTCACTTTTATTTTTTCCATATAAATTATTTTTAATATAATACCCCCCCCCC



gi|18206768|gb|AV910992.1|AV910992 AV910992 K. Sato unpublished cDNA library, cv. Akashinriki vegetative stage leaves Hordeum vu

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||
ACTGTCTTCTCTCTCTCGTAC

EST sequence (targeted fragment marked with yellow):
AAAGCCAACAACTGCTGCAGGTGTTGATGGGATGCATTTATCTAGTCAGCAGATGTCGGACAATGTTATGCCGCATGGTGCACATCATGGTTTCGATGGGTTCATGGCATTCAAGGGAACTTCTACAAAGTTCCCTAATCAAGGTGTCCAAGCTTCCGCTGTCGCCCCCAACTCTAGTGGCGCCCCGGATCTTCAGCATGCTCTCTCTCTTCTGTCAAGCAACCCAGTGGGTGCTGCCAACCTCCAGCCAACTTCCCAGATGCACTCTGGGGTGGCTGCCATTGCCGGCACCCCCAACCCCGCGATGCACGTGCTGGGATCATCGGCAGGGCTCTGGCTAGACGGCGGGCCACCCCTAGATGATCACCCGCGGTTCCAGGTCTTCGAGCGCTTGGGGGACCACGACAGCGAGCTCCAGCTCCCAAAGCCTTCCTACGACCACGCCTCGCACTTCGACCGGATGCACTGATGACGACGGCGCTCCGATCCGGTCACCCCGCTCGGTGCGTGATTTTATCACGCGATCGACGCCGTTTGTTCGGTCTGAAACCCGGGATCCTGCATTTTCTTTGCTTGGTGCCGTTGCCTGCCTAGAGGCTTATGGTTTGGCAATGCCTAGAATAAAGGCGCACACGAACAGACTTAGGATCAAATGACCCGGTTGTGTTGCCA



gi|16313255|gb|BF630636.2|BF630636 HVSMEb0012I04f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hor

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||| |
ACTGTCTTCTCTCCCTCGCAT

EST sequence (targeted fragment marked with yellow):
GGCACGAGATCATCATCAGCAGCAGAAAGTTCAAATCGCTGAGGGATGATGATCAGTGCTCAACTGAAAGAGTCTCATTACCTAGCTGATGATCAAAGAGCCAGAGTCAATCCAATGGCAATCCATGGCAGTTCATCTTTTAAGCGTTCCCAAATCAGATAAGGAAGCTTAAGAGACCAAAACAATACGCTCCCTCTCTTCTGTCATCCGATGGTTCATGTCTTGTACTATTCTGTCATCCGATGGTTCTTGTCTTGTACTCTGTACCACTTACTAGATTTTAATGGAGGATTTTAATAACAATGTCAGGCATCAACTCGATTATCGAGATTTCACAAAGTTTGTGTTCATGCAAACTTGCCTAGCTGTATAATGATGATAATAACCCTTTATCTAAAAAATGAAAAAAAAAAGCTTGG



gi|9419026|gb|BE421183.1|BE421183 HWM006.F08 ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM006.F08,

TGACAGAAGAGAGTGAGCACA
|.|||||||||| ||||| |
ATTGTCTTCTCTATCTCGTAT

EST sequence (targeted fragment marked with yellow):
GGTGTTAATGCCTGGTACTTCCCCTACTATAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATTTCCCGGGCTGCAGGAATTCGGCACGAGGAGGCCTACGCCGCGCGATCCACGCTCAAGGTGCCGTACGAGTCCAAGGGCGCCGGCGGGTACAAGCGCGCCGTGCTGGACTTCGTCGCCGTCAGGGACCGCACGAGGGTCGTCTTCCAGAGCGCCTTCTACCACATGAAGGCCGACGGCACGCTCTGCGGGCCCGTCATCGACGACGCCAAGCTCGTCGGACTGCGCAAGAAGCCCGCCGCACGTCGCCTCATGCTCTGATTAATTCAGATAGCCCCGCCGCCGCACGTCGCCTTACAACAAACAATATACTTCATATATGCGCGCATGCACGACGCGGTAACTCCCGGTCAGGATCAGTGACTACGTAGTATCTATTGCTAGGCTTTTGGTGTGCCAATCGATCGGATGGGTATATGTTGGTATGTGAGTTTCCCGTAGCCTGCCCTGCTTATACTTGCTGTGTCTTAATGCTTTGTTTGTTTATTGGCTTCTGTCATGGTTATCTTATATTTGATACTGACTGGTGTCCATTCTTATCCCTCTCTCTTTCGGTCTCTTTACGTTTAGGGCTTCTCTTGATTTCCCACATATTCTATCTCTTTATATCGTCTTGTTATTCTTTCTTACTTTTCCCTACCATCCGTTTTATTTAGGATTCCGTCCCTCCGTACTTTTTACTTCTCTTCTCCTACTTTAATCTGTCAATCTCTAGATGTCTCATAACAATGCCTCTTCTTGTGTATGCTCTATCTCTTCTGTTATGTTTCTATAGTCTTCTTATACATATCGTCTATGCATAGCCATTCGTGTACTCTATTCTCCTTCTATATATGTATCTTCCGATTCTTTCTGAATCTTATCTATCTACGATCTCTGTCCTCACGTGTCTGACTATACGTTCCATTGTCTACTTGACCTTTCTAGTGCCTGAAGCG



gi|217050860|gb|GH218557.1|GH218557 HVSMEg0012M18f2 Hordeum vulgare pre-anthesis spike (white to yellow anther) cDNA library HVS

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||||
ACTGTCTTCTCTCTCTCGTGT

EST sequence (targeted fragment marked with yellow):
ACCGCAGCCGGATCCGATGAATTCTGCAAGTTTTATGACGAGTCAACAAGGAACAAGGTTTCCATCATTTCCAACTCCAAGACCGGAGCAAAACTGGCCAGGGATCATTAAAACTGAGGAGAACCCCTATTACACACATCAGCTCCCTCTAGGCATCAGTAACAGGCATCATTTTGGTGGCTCTACATCTACTTTCGCGAAAGAAGGACGGAGATTTCCTTTCCTACAGGAGGGCGAAATAAACTTTGCCACCGGTGTGGCACTTGAGCCTGCAGTGTGCCAGCCGCTGCTCAAGACGGTAGCTCCTCCCGAGAGCAGCAGCAGCAGCAGCAAGATGTTCTCCGATGGTCTGACTCCGGTGCTCGACTCGGACTGTGCTCTCTCTCTTCTGTCAGCTCCGGCAAATTCCTCCGGTATCGATGTTGGCCAGATGGTCCAACAGACTGAACACATCCCCATTGCCCAACCTCTGTTCTCCAACCTGCAGCAATTCAGCAGCTCGTCCTGGTTCTCGCGCACCCAGGCTTCCACCGGCACCGTCTCA



gi|21156840|gb|BJ478354.1|BJ478354 BJ478354 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||||
ACTGTCTTCTCTCTCTCGTGT

EST sequence (targeted fragment marked with yellow):
TTCGGCACGAGGCGTCCTTCTCGGCTCCAAGGCCGGAGCCAAGCTGGTCCGGGATCATCAAATCCGAGGACAGCAATCCATTCTACAGCACGCACCAGGTTAACTTCGGCGGCGCCACGTCGTCATACTCCAAAGAAGGCCGGCGCTTCCCCTTCCTCCACGAAGGAGACCAGATGAGCTTCAGCACCGGCGCGCCGGCACTCGAGATCCCCGTGTGCCAGCCTCTCCTCAAGGCCGTCGCCCCGCTGCCGCCGCCGCCCGAGAGCAGCAGCAGCAACAAGATGTTCTCCGATGGACAGTTGACGCACGTGCTCGACTCCGACTGTGCTCTCTCTCTTCTGTCATCCCCGGCCAACTCCTCCAGCGTCGACGTCAGCCGGATGGTCCGTNCAAGCGAGCACGTCCCCTCTGTCCCCAG



gi|16315827|gb|BF258419.2|BF258419 HVSMEf0015K19f Hordeum vulgare seedling root EST library HVcDNA0007 (Etiolated and unstressed

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||||
ACTGTCTTCTCTCTCTCGTGT

EST sequence (targeted fragment marked with yellow):
GGCACGAGGGAAATCAAAACACAGCTCCGGGAAAGTCACTTCATCATCATCATCCGTGGTCAAACAACTAGGAGAATCCTTCTTCGGGTGATATTTTCCTTCAAGGTTCACTAGGAGGGACCGGTTTTTCCAGTACCACAACTTCTCAAGGAGAATGGTTCACGGAAGTTAGTGACTCTAGCTGTGCTCTCTCTCTTCTGTCAAATGCAACCATGGGGCTCCAAAAACCGATCTTCGGCTCTTGGTGTTAACGACATGATGAACACCTAACCACTGCCCCATGGCACATTCGTAAACCCATATTTGCAAACCTCGGAGCCTGCTGATGCTCAACATTTCGGCACGCTTGAGTTGCCTCAGCAAAACAGCGTGCTACACATGGAACTTGAGCAGCACTCCAGATCATTTGACACATCGGCACAGTATGTTCACTGGTCACTCTAAGTGCTTACCGTGACTCTTTCCCATCTTGATGTCCTGTTGTCGTGCCAGTTCTTATGTTGTATGCGCACTTTACCGAGCATCAAATTGTATGTGTTAACGGAATAAACCCGAACTATCCACTGTCTTTGCCATTGCTGTTGCCTGAGTCATCAAGTCAGGCATTACTAGACGATGTACTGGTATTTATATATGATCAATGATATTCGTGACTTCATGAGAGAATATAAACTCGAAGTGGTGATGAGCAGTCGAGTCCCATAGGTTCTCACCCGGTGGGGAACAAGAAAGCGTACCAATTCCGCCCTTGGAAAACAGGGTACATTTAATGGCCGTATACACAACGCCGGAATGAGACAACCTGGGTTCCCAACTTATTACCTTGGTGACATGAGGCTTTTGCAATTGTGGAAATACGAAAAGGCCAGACGATGGCCTTCCCAACATTCGCACATGAAGGG



gi|161478841|gb|EX579949.1|EX579949 HDP30F14T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP30F14, mRNA sequence

TGACAGAAGAGAGTGAGCACA
| |||||||||||. ||||||
AATGTCTTCTCTCG-TCGTGT

EST sequence (targeted fragment marked with yellow):
ACCTAAAGGGGTGCAGTATTACTGTATCAAGTCTGCGTATCGTGAATCATCTTCCGCTATACATCAAGAGGCCAATCAATAAAACTGAACCACAAGTCCATGCAAAGCACGACCCGACCCCGAGGTCTAGAAAGCAGAAACTGAAGTTCGTCAGGCAGGATGTATCTGTCTGTGCTGCTCTCTTCTGTAAGTATACTGCTGCTCCTAGCTGCAGCTATCTCAAGCCTGAAGAAACCCTGTATCCTTTTTTTTCGAGGATCAGAAACCCTGACCTAGGTTGCCTCATTGTCCCAGTAGTTCCTCAGCTGCGACATATGGAGGAGCAGCCCGTCCCGGCCTAGTCCTGTGGTGCTGCTCGTCATGATCCATGGAGGAGGCCTTGGATAGAGAGAACCGATGTTTTCCAGGAACTCTTTGATGTTCTCATC



gi|161469241|gb|EX576980.1|EX576980 HDP06E24w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP06E24, mRNA sequence

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||
ACTGTCTTCTCTCCCTCGTAC

EST sequence (targeted fragment marked with yellow):
GGGGGAAGAGCTCGGCTGAGGCGAACGGCGGCGACGGGTGCCGCCACGCCGACCAGGACGGCCGTAGCCACCCTGGGAACCCGCCGCTGAACCATTTCCAGATCAGATAAACCTACCTAAGCATGCTCCCTCTCTTCTGTCATGCAGCCATGCTACTAGCTACAAATATCTACATATGTATCCACCCACCTACGTAGGTACGTACCTACCTACCCATGTCTCCACTATCCAGTCCCAGTGCACTAAGTGGCAGTATATACTGTCTCCTGTACTGCTATATGCTTGCGTCTGTCCGCCAAAAACCTAAGCTAAGCTAATTGTGACCCGGGAACTAGTCAGGTGTTAGAGTGATTGTCTGTGTGATGTGTAATTGTATGGCCAGTGCAGCCAAGACTTCTACAGGCTGTGTAATATTGCTGCTCTGCTGGGATAATTTGTGGCAATAT



gi|161463568|gb|EX597081.1|EX597081 HDP15L02w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP15L02, mRNA sequence

TGACAGAAGAGAGTGAGCACA
||||||||||||| ||||||
ACTGTCTTCTCTCTCTCGTGC

EST sequence (targeted fragment marked with yellow):
GAAGGAAATAAGAGAAGTGTCAATCAATGGACAAGTTCATTTTGATAAATCTCATCTACCCAATGCTGTTCCAGCACTGAGTCATGACATAGCTGAGCTGCTACCAATGAAAGGTCCGGACGCATCTGCAACCGCTTCGAAATTAGGTGGAGCACCGGATCTTCAGCGTGCTCTCTCTCTTCTGTCAGCTAGTTCTTGTGGATTACCTGATCCAGTACAGCAAGCATCTTGTCTCGTCCAATTCACTGGTGCCAGCCAAAACAGCCGGGGTCTGCCTTCACCACATGGAGGGAGCCCTCCGTCGGCATCCTGTGCCGAGGGACAGCCCATGGCTCCATCACCTCAGTTCGTCCGTTTCACGATGGATGGCGCCAGCAGTGGCTATGAATCCACTTTCTTCGGCGTAAGCCGGATGAATTGATACGCGAGACGTATGCGCCACTGTGTGATTTGGATCTACGGCATGTAAGAGCTTATGCAAGAACTGCTCCCGTCAACTACTAGAGTGGAAAATCTCACTGTTCATGTTACCTACCTACACACTCATTGGTTACCTTGTTGTTTTCCGATGTACAACCCTGCCGCCGATTGTTGGCTCG



gi|16297473|gb|BI953092.1|BI953092 HVSMEm0009O23f Hordeum vulgare green seedling EST library HVcDNA0014 (Blumeria infected) Hord

TGACAGAAGAGAGTGAGCACA
||||| ||| | | ||.||||
ACTGTATTCNCNCCCTTGTGT

EST sequence (targeted fragment marked with yellow):
CCCCATCTTCCTCCCCGCAACTCGCTGCTCCTCCCAAACCCGAAGCTCAGTCCCGTGGCCACGCAGAACAAAATGCANCGAGCAATTCAAGCTATCGGATCACATGGCAGTGTACTCAAATCTGCTGTCCTCCAACACATCAGTGTTGTGAAGCCTGCTATGCTGCCCGCTGTGTTCCCNCNCTTATGTCAGTATCATCTGCTCAAATAGAGGAGAGCGGGTTTGAGAGCAGCACTGTTGCAGATATTTTGAAGTCCAAAGGGAAGAGTGCTGATGGATCATGGCTCTGGTGCACCACAGATGATAGTGTCTATGATGCTGTCAAATCGATGACACAGCACAACGTGGGAGCTTTGGTGGTTGTTAAACCTGNGGAAGATAAATCAATTGCTGGCATCGTCACAGAGAGAGATTATCTCCGGAAAATCATCGTGCAGGGTCGATCCTCCAAGTCAACCAAAGTTGGAGATATCATGACTGAAGAGAACAAGCTGATCACGGTGAAGCCTGACACCAGAGTCCTGCAAGCAATGCAGCTGATGACAGACAAGCGTATCAGGCACATTTCCGTGATCACCGGCGCACANATGATGGGGATGGTCTCGATTGGTGACGTCGTGCGCGCAGTGGTCACCGAGCACAAGGAGGAGCTGAACCGGCTCAACGCCTTCATCCAAGGCGGGTACTAAGGGTTCGCAAGCCCCTCCCGGCTGCGTTTGCAAGACGTCCCTTTGAGTGACCTCTACATTACCAACCAGGGTAATGATGACAAAATAGGCCTGGTTTTTCGTAAACAGTGGCTGGGGACTTGAATTTGCGGGGGTTGATAGTTCCCGGTTTTAGGGTTTTTTCGGTGCGACCGCCAACGGGGCTGTTTGGGGCGTTTAACATTCGGGGGGGGGTGACCGCAAAATCTTGGGTTGGCAGGAAGAATGTTGTTAGCACACGTTTTCTCCGCCGCAGCTAGAAGGGAAGAGGCCCGCAAGATTGTTTGAGCCAAGGAAGAGAAGTCCGCCGCGAGCACGCCCGGTTGGTGGGAACGAAAGAAGCGTGCGTGGGCGGCGCCGCNNCGGNTGGTATGGTGCGTTGGTTGGAAGGGAGAGAGCGAGGGTTGTACGGACGCCGTGATGTTAAGGAACGTAG



gi|18111899|gb|BM368509.1|BM368509 EBem08_SQ002_I24_R embryo, 40 DPA, no treatment, cv Optic, EBem08 Hordeum vulgare subsp. vulg

TGACAGAAGAGAGTGAGCACA
||||||||.|||.|||| ||
ACTGTCTTTTCTTACTCACGT

EST sequence (targeted fragment marked with yellow):
CTTCGAAGAACGATCAGAAGCAGGCTAGCTCATGATGTATTTATATATATAAGTTCAGTTAGTGAAAGGCAATCAATACCCGTTGCCCCCTTTCCCTAACTGTATTTATATATATAAGTTCAGTTAGTGAAAGGCAATCAATACCCGTTGCCCCCTTTCCCCTGTTGCTTATGGTGGGGATGTTGGGAGCATGCACTCATTCTTTTCTGTCAATTGTTTTCTAGTGGGATAAATAATACTGACTGGAAACAGTGGGGTTGTGTAAAAAAAAAAAA