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mature miRNA: TGACAGAAGAGAGTGAGCACA
species: Solanum tuberosum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|115277633|gb|EG015874.1|EG015874 SSBN002B03u SSBN Solanum tuberosum cDNA clone SSBN002B03, mRNA sequence 

TGACAGAAGAGAGTGAGCACA
||||||||||||| ||||||
ACTGTCTTCTCTCTCTCGTGC

EST sequence (targeted fragment marked with yellow):
GCTCGAGCGGCCGCTCAGCTATCTGGTATTATACAACCGATCACATATGAATGGTATAGACAGTCAAAACTCGTTCCCTGGTTCTTCGGGTCATAGCTATACAGGAGGAAGCCAATTCCAGTTCATGCAAGGCAGTGATCATAGTCTGACTGAATCTTCTTCAATCTGCCAGCCACTTTTTGAACATCCCACTTCTGCAGCAGGAATTTCTAGCAGCGGACAAAAGATCTTCTCCAGTGGATTAAATGATATTGTTGATTCTGATCGTGCTCTCTCTCTTCTGTCATCAGCACCCGCTGTAACTAGGGAGATTGGTTTGAGTCACATGGTGCAGCAGCCTGCCTCTATCCCGCGTTCCCAGTCACAGGGCCTGCAGTATGATGGTCTAAGCCATTTCCCTTTTGCTCAAGATTTCAATAGCAAACCTCAAGATTCACACGTTAGCAACAGCAGCAGCCCTCTCCATTTCCATGATATGTTGCAAAATGCACAAGATGGATCATCTACAAGTGGTGGCTCTCAGCAAACACTAGCCTTTATGTGGGACTAAACTTTTAGCATCAAGGATATTCCGTTAATCTTGAATCCATCCAACCAAATGGTATTCCATTCCAGAATGTTTAGCTTCTAATTAGAGTCGAATGTTTGTGTGATATATCACTTAACTTTTCTATATTTTCC


gi|66839148|gb|DR037253.1|DR037253 48828.2 Late Blight-Challenged Tubers Solanum tuberosum cDNA clone 48828 3', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
||||||||||||| ||||||
ACTGTCTTCTCTCTCTCGTGC

EST sequence (targeted fragment marked with yellow):
GTTGATTCTGATCGTGCTCTCTCTCTTCTGTCATCAGCACCCGCTGTAACTAGGGAGATTGGTTTGAGTCACATGCTGCAGCAGCCTGCCTCTATCCCGCGTTCCCAGTCACAGGGCCTGCAGTATGATGGTCTAAGCCATTTCCCTTTTGCTCAAGATTTCAATAGCAAACCTCAAGATTCACATGTTAGCAACAGCAGCAGCCCTCTCCATTTCCATGATATGTTGCAAAATGCACAAGATGGATCATCTACAAGTGGTGGCTCTCAGCAAACACTAGCCTTTATGTGGGACTAAACTTTTAACATCAAGGATATTCCGTTAATCTTGAATCCATCCAACCACATGGTATTCCATTTCAGAATGTTTAGCTTCTAATTAGAGTCGAATGTTTGTGTGATATATCACTTTTC


gi|78748824|gb|DV625227.1|DV625227 95541.1 Cold Sweetening C Solanum tuberosum cDNA clone 95541 5', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
||||||||||||| ||||| |
ACTGTCTTCTCTCTCTCGTTT

EST sequence (targeted fragment marked with yellow):
AGTGGATCCCGCGCTGCAGGCTAAATCCATGGAGAAAAATGATGACTTTTTGGTAATTCCACTAGTGAAAATGCTAAGAAAAAAATCATTACAACAAATAATAATAACAACTAGAAATTATCATCATCATCAAATTCTTCTTCTTCTTCTTCACTAATAAGAAGTTGTCAAGCTGAGAAATGTAATGTTGATTTAAGTGATGCTAAGCAATACCATAAGAGGCATAATGTCTGTGAATATCATGCTAAAGCTCAAGTCGTCGTCGTCGCTGGACTCCGCCAACGTTTCTGTCAGCAATGCAGCCGATTTCATGAGCTAACGGAATTTGATGAATCGAAAAGGAGTTGCCGGGAGACGTTCGGCTGGACACAAGGAAAGGCGAAGAAAGAGTACATCGGCGTCATCGTCTTCATCATCTACAGATCAGTCTCATAGAATTCATATATCTATCCAAGAAAATTCAAGTTCACAAAAATTTCCACCTACGTTGACTAAAATGCATATCCTATTTAATAAATTTGCTCTCTCTCTTCTGTCATAAATCTGTTTCTAAGATAATATTCATCATTCACATACCATCCCG