| mature miRNA: TGACAGAAGAGAGTGAGCACA species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9851022|gb|BE595949.1|BE595949 PI1_50_D04.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): AAATTTGATGGAGCACCGGATCTTCAGCGTGCTCTCTCTCTTCTGTCAGTTGGCGCTTGTGGATTGCCTGATCCTGTACATCAAACATCCTGCGTTATCCAATTCACTGGTGCCAGCGAGAACAGTGGTGACCTTCATTTATCACATGGGGGGAACTCTGGTCCAGCTTCATGCGCTGATGGACAGCATATAGCTGCTCAGTCTCAGTCTCAGCTGGTTCGTTTTACCATGGATACCAGCAACAATGTCTATGAGCCCAGTTTCTTCGGTGTAAACCAGATAAATTAAGCGTGAAAGATACACGCCAGTTGATCATTTGGATAAATAGCCATGAAGATGGCCTGGGCTTGTGCAGGAAGTTCTTCAACCAACCACCGGACATAAGGATCTCTCAGTTAATGTTATCTGCATATTTATCAGCTTATGTTTAATATGCAGTTCCAACCTGTGATTGACCCATTTTTTCTGTTGTTTTTTTTGCCCCCTGTGATGTGACGACTCTGGAACTTTCTAAGTGTGATACTATGTAGTTTTACACTTTTATTTTAC | |||||||||
gi|7660905|gb|AW747167.1|AW747167 WS1_66_F11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): CACGGGGTGGAGGCGGGCAACAATCCCGCGGAGCTGGCGGCGGCCGTGGGTGGCGCCTCCAGCAGCTCCTCCCGGGCGGCGGCGAGGAGCAGGGTCGCGGCGGCTGCTGGCGCCTCCGGCTCCTCCCCGGTGGCGGCGGCGAGGAGCAGGGGCGCCGGCGCCGTGGCCGCGGCGGCGGGCGGCGGCGGTGGCGTCGGGCCGAGCTGCCAGGTGGAGCGGTGCAACGCCGACATGGGCGTGGAGAAGCGGTACAACCGGAGGCACAAGGTGTGCGACGCGCACCGCAAGGCGTCCGTCGTCCTCCTCGCCGGCCTCCGCCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCACGAGCTGTCGCACTTCGACGACACCAAGCGGAGCTGCCGCCTGCGCCTGGCGGGGCACAACGAGCGGCGCCGGAGGAACCCGGCGGAGGCGCACGACCAGAACGGCGGCCGGGGCGACCCGGGGAACCACCACCTCCACATCAGATCAGATAAACCTATCTAAGCATGCTCTCTCTCTTCTGTCATGCAGGATGCACCTAGCATCACCGATCGATAATCCGATTTGTGTCTCAGTGCCTACCCTGTCCTGTGTCTGTGTGTTGCGTATGGTACGTGCTGCTGCTACTACGTGCTAACTT | |||||||||
gi|45948447|gb|CN124703.1|CN124703 RHOH1_6_H10.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_6_H10_A TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): AAACAGAACATGAATAAACTAAAATGACGCATAATCCATAAATGATTATACCAAACATGTGCATCCAGAAATGAAAAAATGTTACAGTTCAGTTCGCATATAAGAAGTCAAACACTCAAATACACAAGCAGTAGCAGCATGACGATTCGACTAACACAATCTAACAGCGATACAGGTAAGCATGCGAAGTGAAAACTAAACTTGATCGCAAACACATGCAACAAGAGATCATTGAGCCATTCGCTTCTTCAATGCCTGCCTCGGGTTCTCGCCCTGCTCGCCTCCTCTGGGGTCGACGGGAACAGCTCTACATACCTCGTCCCAATGGTCATCTTATCCTTGCACATGGCCGTCTTGGCAACTTCAGCAGTGGGGAACTCAACAAAGGGTTCACCAGTAGCTTTCCCATCTGAGCGGGATGCAATATGCACATTCTCCTCTGTCAGCTCATACTCCAGGAAGAACTTGATGATGTCCTCAGTGGTGGCAGAGTAGGGAAGCCCACGGAGCTTCAGCACCTCAGTGTACTCCATACTGCCCTTGTCTTCAGCCGGCTTCTTAAACCTTGGAGGAGGTGGGGAGCGGCGGTACTCTGACTCAAAGTAACCACCCTGGCTCACCTCGTTGGCTATTGCACAGTAGTACTCCTGCTTCTTGCATCTGAACACCTCAACATATCTCCGGCCCATGTTCTGCCTGTTGCGATGCAGCGCAAATTCTGCTTGCATAGCTGTTGGGAAGACCACAAAAGCCTCACCAGTGAAGCGCCCATTCTTGTTAACCA | |||||||||
gi|37758764|gb|CF772403.1|CF772403 DSBF1_34_E12.g1_A010 Drought-stressed before flowering Sorghum bicolor cDNA clone DSBF1_34_E1 TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): ACCAAACATGTGCATCCAGAAAAGAAAAAATGTTACAGTTCAGTTCGCATATAAGAAGTCAAACACTCAAATACACAAGCAGTAGCAGCATGACGATACGACTAACACAATCTAACAGCGATACAGGTAAGCATGCGAAGTGAAAACTAAACTTGATCGCAAACACATGCAACAAGAGATCATTGAGCCATTCGCTTCTTCAATGCCTGCCTCGGGTTCTCGCCCTGCTCGCCTCCTCTGGGGTCGACGGGAACAGCTCTACATACCTCGTCCCAATGGTCATCTTATCCTTGCACATGGCCGTCTTGGCAACTTCAGCAGTGGGGAACTCAACAAAGGCTTCACCAGTAGCTTTCCCATCTGAGCGGTATGCAATATGCACATTCTCCTCTGTCAGCTCATACTCCAGGAAGAACTTGATGATGT | |||||||||
gi|45996430|gb|CN152438.1|CN152438 WOUND1_82_C02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_82_C02_A002 3', mRNA s TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): AAATGAAGCAAAATCCATAAATGATTATACCAAACATGTGCATCCAGAAAAGAAAAAATGTTACAGTTCAGTTCGCATATAAGAAGTCAAACACTCAAATACACAAGCAGTAGCAGCATGACGATACGACTAACACAATCTAACAGCGATACAGGTAAGCATGCGAAGTGAAAACTAAACTTGATCGCAAACACATGCAACAAGAGATCATTGAGCCATTCGCTTCTTCAATGCCTGCCTCGGGTTCTCGCCCTGCTCGCCTCCTCTGGGGTCGACGGGAACAGCTCTACATACCTCGTCCCAATGGTCATCTTATCCTTGCACATGGCCGTCTTGGCAACTTCAGCAGTGGGGAACTCAACAAAGGCTTCACCAGTAGCTTTCCCATCTGAGCGGTATGCAATATGCACATTCTCCTCTGTCAGCTCATACTCCAGGAAGAACTTGATGATGTCCTCAGTGGTGGCAGAGTAGGGAAGCCCACGGAGCTTCAGCACCTCAGTGTACTCCATACTGCCCTTGTCTTCAGCCGGCTTCTTAGACCTTGGAGGAGGTGGGGAGCGGCGGTACTCTGACTCAAAGTAACCACCCTGGCTCACCTCGTTGGCTATTGCACAGTAGTACTCCTGCTTCTTGCATCTGAACACCTCAACATATCTCCGGCCCATGTTCTGCCTGTTGCGATGCAGCGCANATTCTGCTTGCATAGCTGTTGGGAAGACCACAAAAGCCTCACCAGTGAAGCGCCCATTCTTGTTAACCAGGAGGCAGTCCACTATGTCCAGTCCCACAAAGAACTTGCAGATGTCAATGTCGTTGCAATCAAAAGGGAGACCACGCAGCCGGACACCTGGGAAGTTTTGGATGCCAGTGCTAGCCCCTGCACCAG | |||||||||
gi|14365557|gb|BG947368.1|BG947368 IP1_4_F05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): CGCGGCCCCGCCGCCCGAGAGCAGCAGCAGCAACAAGATGTTCTCCGACGGGCTCACCCCCGTGCTCGACTCAGATTGTGCTCTCTCTCTTCTGTCATCCCCCGCCAACTCCTCCAGCGTCGACGTGAGCCGGATGGTCGTCCAGCCCGCGGCGGAGCACATCCCCATGGCGCAGCCCCTCGTCCCCAGCAGCAGCCTCCAGCACCACCACCAGCACCACCAGTTCGGCAGCTCCCCGGGCGGCTGGTTCGCCTGCTCCCAGGCCGGCTCCAGCGCCGTCTCCGGCGCGGGCACCGGCACCGGCGGCTTCGCCTGCCCCGCCAGCGTGGAGAGCGAGCAGCTCAACACCGTCCTGGTGCCCAGCAACGACGCCGGCCACGAGATGAACTACCACGGCATCTTCCACGTCGGCGGCGAGGGATCCTCCGACGGGACGTCCCCTTCGCTCCCGTTCTCGTGGCAGTAGCTTCTTCCGTCCGGTTCAAGCGACCAGTAGTGATCGGTGTTCAGCTGTAGTGATCCTGTTCTTTCTGTGTTTATTTATTATTATTATTCTCCCTGTCATTTGCTCGTTTCTTCGTTTTGCATGCCTGATGCATGCAGCCTGAAAAAACTCGCATAAAATTAGTGCCGAATTTCTCCTGAAACCGTTCTGATATCTTACTGATTC | |||||||||
gi|14365556|gb|BG947367.1|BG947367 IP1_4_F04.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): CTCACCCCCGTGCTCGACTCAGATTGTGCTCTCTCTCTTCTGTCATCCCCCGCCAACTCCTCCAGCGTCGACGTGAGCCGGATGGTCGTCCAGCCCGCGGCGGAGCACATCCCCATGGCGCAGCCCCTCGTCCCCAGCAGCAGCCTCCAGCACCACCACCAGCACCACCAGTTCGGCAGCTCCCCGGGCGGCTGGTTCGCCTGCTCCCAGGCCGGCTCCAGCGCCGTCTCCGGCGCGGGCACCGGCACCGGCGGCTTCGCCTGCCCCGCCAGCGTGGAGAGCGAGCAGCTCAACACCGTCCTGGTGCCCAGCAACGACGCCGGCCACGAGATGAACTACCACGGCATCTTCCACGTCGGCGGCGAGGGATCCTCCGACGGGACGTCCCCTTCGCTCCCGTTCTCGTGGCAGTAGCTTCTTCCGTCCGGTTCAAGCGACCAGTAGTGATCGGTGTTCAGCTGTAGTGATCCTGTTCTTTCTGTGTTTATTTATTATTATTATTCTCCCTGTCATTTGCTCGTTTCTTCGTTTTGCATGCCTGATGCATGCAGCCTGAAAAAACTCGCATAAAATTAGTGCCGAATTTCTCCTGAAACCGTTCTGATATCTTACTGATTC | |||||||||
gi|7553383|gb|AW679616.1|AW679616 WS1_2_B01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): AGTCATGGCAAAGATGAGCCTTGGCCAATGAAAGGTCCGGACATGTCTATAACTGCTTCAAAATTTGATGGAGCACCGGATCTTCAGCGTGCTCTCTCTCTTCTGTCAGTTGGCGCTTGTGGATTGCCTGATCCTGTACATCAAACATCCTGCGTTATCCAATTCACTGGTGCCAGCGAGAACAGTGGTGACCTTCATTTATCACATGGGGGGAACTCTGGTCCAGCTTCATGCGCTGATGGACAGCATATAGCTGCTCAGTCTCAGTCTCAGCTGGTTCGTTTTACCATGGATACCAGCAACAATGTCTATGAGCCCAGTTTCTTCGGTGTAAACCAGATAAATTAAGCGTGAAAGATACACGCCAGTTGATCATTTGGATAAATAGCCATGAAGATGGCCTGGGCTTGTGCAGGAAGTTCTTCAACCAACCACCGGACATAAGGATCTCTCAGTTAATGTTATCTGCATATTTATCAGCTTATGTTTAATATGCAGTTCCAACCTGTGATTGACCCATTTTTTCTGTTGTTTTTTTTGCCCCCTGTGATGTGACGACTCTGGAACTTTCTAAGTGTGATACTATGTAGTTTTACACTTTTATTTTACTGCCCTGATGATGATGATGATGATGATGTCAACGGTTGGATATCTTTAAACTGTCCTTGATGAATCTGGACATGTTTTTTT | |||||||||
gi|57806599|gb|CX607879.1|CX607879 ANR1_31_G07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_31_G07_A002 3', mRNA sequ TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): GAAGCAAATCCATAAATGATTATACCAAACATGTGCATCCCGAAAAGAAAAAATGTTACAGTTCAGTTCGCATATAAGAAGTCCAACACTCCAATACACAAGCAGTAGCAGCATGACGATACGACTAACACAATCTAACAGCGATACAGGTAAGCATGCGAAGTGAAAACTAAACTTGATCGCAAACACATGCAACAAGAGATCATTGAGCCATTCGCTTCTTCAATGCCTGCCTCGGGTTCTCGCCCTGCTCGCCTCCTCTGGGGTCGACGGGAACAGCTCTACATACCTCGTCCCAATGGTCATCTTATCCTTGCACATGGCCGTCTTGGCAACTTCAGCAGTGGGGAACTCAACAAAGGCTTCACCAGTAGCTTTCCCATCTAAGCGGTATGCAATATGCACATTCTCCTCTGTCAGCTCATACTCCAGGAAGAACTTGATGATGTCCTCAGTGGTGGCAGAATAGGGAAGCCCACGGAGCTTCAGCACCTCAGTGTACTCCATACTGCCCTTGTCTTCAGCCGGCTTCTTAAACCTTGGAGGAGGTGGGGAGCGGCGGTACTCTGACTCAAAGTAACCACCCTGGCTCA | |||||||||