| mature miRNA: TGACAGAAGAGAGTGAGCACA species: Thellungiella halophila database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|209454584|gb|BY834654.1|BY834654 BY834654 RTFL1 Thellungiella halophila cDNA clone RTFL01-51-I17 5', mRNA sequence TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): GGACTCTTCTTTCCTTTCTCGCTCTCTTCTCAGTCTCTTCTGTCATTTCTTTCTCCCTTCTTCTAAAAATCAACAACACAGATACCCGAGTGTATCAAGTTGTCAAGACTCTTGCTTTCTTCTGATAGGTTCTTCTCACAAGGATCTGTTTTCTCTTCTTTTCTGAAGTAGCTCCTTTATTTTTTATTGTAGTAGAAAATTCTTCATCAGATGAGTTATCAGCTCTGGATTTGGACGAAGAGTTCGCCGGCGTCGAGTTTGCAGAGCCGTCAAACAAGGAGATACAAGTGTTGTTGTCACCGATAGACTTATAGGAGCTTGTGTTTTCCACCACTTTGTCTTCTCTTTATAATCCATTCTCGACATTTTAATCTAACTTCTCTGAATCTGTGAGAAGAGCTAACTCGGCTGGAGTAGAAACCAAGTAGTGTGGTGAATTTTGTAGTTGTGGTGATTCGGAACTCGATTTGTCTTCTCCATCCACAGTTCCTCCAACGTCTTCAAAACAAGGGACCCATGTCGATCCTGAATGAATCTTCAAGGTCCACATACAAGCTTCTCGTCATCTGTAAATTTTGGAGCTCCTCTGATCACTTCATGTTGACCAATGTTGTCAAATTTCCAATATTCATGTGTCCCAGCTTTTGATGCCATAGGTGT | |||||||||
gi|209482092|gb|BY820998.1|BY820998 BY820998 RTFL1 Thellungiella halophila cDNA clone RTFL01-31-J01 5', mRNA sequence TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): GCTCTTCTTTCCTTTCTCGCTCTCTTCTCAGTCTCTTCTGTCATTTCTTTCTCCCTTCTTCTAAAAATCAACAACACAGATACCCGAGTGTATCAAGTTGTCAAGACTCTTGCTTTCTTCTGATAGGTTCTTCTCACAAGGATCTGTTTTCTCTTCTTTTCTGAAGTAGCTCCTTTATTTTTTATTGTAGTAGAAAATTCTTCATCAGATGAGTTATCAGCTCTGGATTTGGACGAAGAGTTCGCCGGCGTCGAGTTTGCAGAGCCGTCAAACAAGGAGATACAAGTGTTGTTGTCACCGATAGACTTATAGGAGCTTGTGTTTTCCACCACTTTGTCTTCTCTTTATAATCCATTCTCGACATTTTAATCTAACTTCTCTGAATCTGTGAGAAGAGCTAACTCGGCTGGAGTAGAAACCAAGTAGTGTGGTGAATTTTGTAGTTGTGGTGATTTGGAACTCGATTTGTCTTCTCCATCCACAGTTCCTCCAACGTCTTCAAAACAAGGGACCCATGTCGATCCTGAATGAATCTTCAAGGTCCACATACAAGCTTCTCGTCATCTGTAAATTTTGGAGCTCCTCTGATCACTTCATGTTGACCAATG | |||||||||
gi|209475170|gb|BY829598.1|BY829598 BY829598 RTFL1 Thellungiella halophila cDNA clone RTFL01-44-D17 5' similar to NM_125780.2 Ar TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): GGGCAGCAACTGCTCTCACCACTCTTTTCCTTTGCATTTCTTCTTTTTGTTTTTGTTTTCCATACTTTTTTGTTTTTGTTTTTTTTTCGTTTTCTTCGAGTTTAGTTTTCTGCATAGCTTTGTCTAAAGCTTATCATCGCAAGGCTTAATAAGAAGAGTTTACTAGAACCAGATGGATGTTCCTCGGCCAGCTTTCAAATGTTTCGATGACGATGGCCGGCTTAAAAGATCAGGTACGGTCTGGACCGCAAGTGCGCATATTATAACGGCAGTGATTGGATCTGGTGTTCTATCGCTGGCATGGGCCATAGGTCAACTCGGTTGGATCGCGGGTCCTGCAGTGATGTTCTTGTTCTCTTTTGTCACTTACTACTCTTCCACTCTTCTCAGTGACTGCTACAGAACCGGAGATCATGTTTCCGGAAAGAGAAACTATACTTACATGGATGCTGTCCGATCAATTCTCGGTGGGTTTCGGTTCAAGATCTGTGGTCTGATCCAGTACTTGAATCTATTTGGTATCACGGTCGGGTACACAATCGCGGCAGCCATAAGCATGATGGCGATCA | |||||||||
gi|209476537|gb|BY827086.1|BY827086 BY827086 RTFL1 Thellungiella halophila cDNA clone RTFL01-40-I15 3' similar to NM_117821.2 Ar TGACAGAAGAG-AGTGAGCACA EST sequence (targeted fragment marked with yellow): ACGCAAAACATCTTTAATTATAGATAAATGAATAGGCACATACGTATTGTCAATCCATTTTGAAATACACAACAGAGTCACCAAATCAAAAACTTCAAAACGATTTACAACTATAGAAAGAAGCAGAGAGATTTTTGTAGATATCATGTGTGATGATTTTTACATGATGATATATAGACACCATATCCATCTCAGCCGCAGCATCCTCCTCCTTGCGATGTGGATCCGTCTCTTCCACCTGATGGCCCTGGAATTCCTCCATATCCAACTTTTATTCCATATGACTCGTTTGACACATCAAACACACCATCTTGAATCTTTTTGTATATTGTTGCCGCGGTCTTAATGAATGCCTCCTCGACATTTTGAGCAGTTTTGGCAGAGGCCTCCATGAATATAAGACCGTGCTCCCTTGCAAACTGCTCTCCTTCCTCTGTGCTCACTGCTCTTCTGTGGGCAAGATCACACTTATTACCAATAAGCATTATCGTCATATTAGCGTTTGCATGCTGCCTTGCATCCTCCAGCCAGCTGGCTAGATGGTTAAATGTCTCCCTCCTT | |||||||||
gi|209481259|gb|BY824355.1|BY824355 BY824355 RTFL1 Thellungiella halophila cDNA clone RTFL01-36-I15 3' similar to NM_121124.3 Ar TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): GGGATGGAGTCTTTGGTTTTATTATCTTGAAGAGTAGCACAATAAGAGAAGCACAAGAACTCAGTCTTGGCAAGTTAACGAATGAAACAAAACACAACAACAACAAACATCAGACAATAAAAACAACAACGAAGACTCCATATATATACATTGATCTAAAAGCTTTCGACATCATCAAGCACTGGACCAGACACGAGAAGGAACTCTTTTATTACCAACCTTCAACTTTTTAGTAACCTCCCTGAATAAAAGCATTCAGGCGGTCAAGCTCCTCTCGATGTTCACTGACAACTGCACGGACCACGTCTCCTATGGACACCATTCCCACCATACCCGTGTCTTTGATTACTGGAATGTGCCTGATCCTGTTATCTGTCATCAGTTGCATAGCCCGCAAGACCTTGGTCTCCGGTGTCACAGTGATGAGCTTATTCTCTTCAGTCATAATATCCCCTACTTTTGTTGATTTGG | |||||||||