| mature miRNA: TGACAGAAGATAGAGAGCAC species: Ipomoea nil database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|27244820|gb|BJ563000.1|BJ563000 BJ563000 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm38k23 5', mRNA TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CTGTTTGAGTTACTTCTTCCCAACTTCTTTTACCATCAAAGAAATGGAAACAAGCAAACCAGAGGGGAAAAGAAGCATAAATGAAACTGACTCGGTGGCAGAGGGGGGAGAAGATGAAGACGAAGATGTTGAAGAAGACAACAAAAAGAAAAGAGCATTGACTCTATCTGGAAGGAAGTTAACTGGTGGAGGGTCAACACAGCTGTTCTGTCAGGTGGAAGACTGCACCACAGATATGACAGATGCCAAGCCATACCATCGCCGCCACAAGGTCTGTGAGATTCACGCAAAGGCTCCGTCAGTACTTATAAATGGAGTCCAACAGCGCTTCTGTCAGCAATGCAGCAGGTTTCATGAATTAGCCCAGTTTGATGAAGCTAAGAGGAGTTGCCGGAGGCGATTGGCAGGTCACAATGAGCGCCGCAGGAGAATTACATATGATCCTCGTGGTGAAGGGTCAACCTGAAGACGTAATACCAGTGGGGGGACAAACCAACTCCTTATTGGAACTCATAAGAAGATTGGTCTCTGAACCACATAGCTTATCAATGTAATTTCTAGCATGCTCTCTATCTTCTGTCAATTGCTAGA | |||||||||
gi|27244801|gb|BJ562981.1|BJ562981 BJ562981 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm38j19 5', mRNA TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CTGCTTGAGTTACTTCTTCCCAACTTCTTTTACCATCAAAGAAATGGAAACAAGCAAACCAGAGGGGAAAAGAAGCATAAATGAAACTGACTCGGTGGCAGAGGGGGGAGAAGATGAAGACGAAGATGTTGAAGAAGACAACAAAAAGAAAAGAGCATTGACTCTATCTGGAAGGAAGTTAACTGGTGGAGGGTCAACACAGCTGTTCTGTCAGGTGGAAGACTGCACCACAGATATGACAGATGCCAAGCCATACCATCGCCGCCACAAGGTCTGTGAGATTCACGCAAAGGCTCCGTCAGTACTTATAAATGGAGTCCAACAGCGCTTCTGTCAGCAATGCAGCAGGTTTCATGAATTAGCCCAGTTTGATGAAGCTAAGAGGAGTTGCCGGAGGCGATTGGCAGGTCACAATGAGCGCCGCAGGAGAATTACATATGATCCTCGTGGTGAAGGGTCAACCTGAAGACGTAATACCAGTGGGGGGACAAACCAACTCCTTATTGGAACTCATAAGAAGATTGGTCTCTGAACCACATAGCTTATCAATGTAATTTCTAGCATGCTCTCTATCTTCTGT | |||||||||
gi|74415144|gb|CJ769964.1|CJ769964 CJ769964 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf38j07 3', mRNA sequ TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CTCGTACTCGAAGCTTCCGAGATCCAATTCGGCGGAAGATACGACGTCTTCTCTATCTTCTTTCTCTTCATCGGCCTTCTTCTCGGGCTCGTTACGTCTCCAAAAATTTTCCAGTTGCTCAGTTCAAGTTAAATCCGGCCGTCCACTTGCTCCTGTTCGAGCAACTGCTCAGGTGGCTGAACCACAATCAAAAGTGACAAGCCAAGTTTATTTTGACATTAGCATTGGGAATCCTGTGGGAAAGGCTGCTGGGAGAATTGTGATTGGATTGTATGGAGATGAGGTGCCACAAACAGCTGAGAATTTCCGTGCTCTATGCACAGGAGAGAAGGGCTTTGGCTTCAAAGGCTCTAGTTTCCATCGTGTTATTAAGGACTTCATGATTCAAGGGGGTGACTTTGACAAGGGAAATGGAACTGGTGGTAAGAGCATATATGGTCGTACATTTAAAGATGAAAACTTCAAGTTGGTTCATGCTGGACCTGGAGTTGTGAGCATGGCAAATGCAGGCCCCAACACAAATGGAAGCCAGTTCTTCATATGCACTGTCAAGACACCATGGCTGGATAACAGGCATGTGGTGTTTGGTCAAGTTATTGAGGGCATGGATGTGGTGAAGCTAATTGAATCACAGGAGACAGACAGGGGTGATCGTCCTAAGAAGAGGGTTGTCATCAGTGATTGTGGTGAACTCCCAATTGTCTAAGCCTAAGCATAAATTCTGTCCTTTTAGTTACTATAGAGTACTACTAGTCTTCCCATCAATAATAGTGTTGTGGGAAATCTCAAGGCTTTTTTTTAATTCCAAGAATGATATTTGTAGAAACTCTGTGAACTTTGAACTGGAATTCTAGATTTGTATGGCTTGTATCTGG | |||||||||
gi|74409400|gb|CJ764220.1|CJ764220 CJ764220 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf32o02 3', mRNA sequ TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CTCTTCTCCTGCTTGAGTTACTTCTTCCCAACTTCTTTTACCATCAAAGAAATGGAAACAAGCAAACCAGAGGGGAAAAGAAGCATAAATGAAACTGACTCGGTGGCAGAGGGGGGAGAAGATGAAGACGAAGATGTTGAAGAAGACAACAAAAAGAAAAGAGCATTGACTCTATCTGGAAGGAAGTTAACTGGTGGAGGGTCAACACAGCTGTTCTGTCAGGTGGAAGACTGCACCACAGATATGACAGATGCCAAGCCATACCATCGCCGCCACAAGGTCTGTGAGATTCACGCAAAGGCTCCGTCAGTACTTATAAATGGAGTCCAACAGCGCTTCTGTCAGCAATGCAGCAGGTTTCATGAATTAGCCCAGTTTGATGAAGCTAAGAGGAGTTGCCGGAGGCGATTGGCAGGTCACAATGAGCGCCGCAGGAGAATTACATATGATCCTCGTGGTGAAGGGTCAACCTGAAGACGTAATACCAGTGGGGGGACAAACCAACTCCTTATTGGAACTCATAAGAAGATTGGTCTCTGAACCACATAGCTTATCAATGTAATTTCTAGCATGCTCTCTATCTTCTGTCAATTGCTAGACTTCAATTACAAATCATTGCCTCTATGTGTGGTTTGTAATTCATTCAGCCTCCATCCCCTCTCCCAGTGGGAGGGTGATTCAGGGGAGCATTATCATTTGGATGAAGTTTCCTATATCTTATTATCATTGAGGCTG | |||||||||
gi|74390392|gb|CJ745212.1|CJ745212 CJ745212 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf31b21 5', mRNA sequ TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGTCATCTTCTTCCATTTCGTTTCTTCCCAGAGATCCTATCCTCACGGTGCCGCTGCCTCTAGGTATTCTCTATCTTCTCTCTCCTCCACTCTCTTATGCATTTTTTTTTTTTTTC | |||||||||
gi|27238212|gb|BJ556392.1|BJ556392 BJ556392 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm1b20 5', mRNA TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CTGTTTGAGTTACTTCTTCCCAACTTCTTTTACCATCAAAGAAATGGAAACAAGCAAACCAGAGGGGAAAAGAAGCATAAATGAAACTGACTCGGTGGCAGAGGGGGGAGAAGATGAAGACGAAGATGTTGAAGAAGACAACAAAAAGAAAAGAGCATTGACTCTATCTGGAAGGAAGTTAACTGGTGGAGGGTCAACACAGCTGTTCTGTCAGGTGGAAGACTGCACCACAGATATGACAGATGCCAAGCCATACCATCGCCGCCACAAGGTCTGTGAGATTCACGCAAAGGCTCCGTCAGTACTTATAAATGGAGTCCAACAGCGCTTCTGTCAGCAATGCAGCAGGTTTCATGAATTAGCCCAGTTTGATGAAGCTAAGAGGAGTTGCCGGAGGCGATTGGCAGGTCACAATGAGCGCCGCAGGAGAATTACATATGATCCTCGTGGTGAAGGGTCAACCTGAAGACGTAATACCAGTGGGGGGACAAACCAACTCCTTATTGGAACTCATAAGAAGATTGGTCTCTGAACCACATAGCTTATCAATGTAATTTCTAGCATGCTCTCTATCTTCTGTCAATTGCTAGAC | |||||||||
gi|74398749|gb|CJ753569.1|CJ753569 CJ753569 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf41i03 5', mRNA sequ TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): TGAGATCGCAAGAATCAAAGTTATGGTATAGCTACAATTAAGCTTCCATCAATCCTCTCAGAATATATAGAGAACTCTAGTTCATAAGGGGATCAAGATTTATGCTATGGAGGCTGTCAATGCACTGAGATTGACTCCACTTTCTGTTCTTTCTGAGAGAAGAAATGAACCCAGAAAAATCCCATTGCTACCTTCTTCTTTACCATTCAAGAGCCTCTCTTCTTCAAACTCCATGGAGGCTATATCAAGAAATGTTAAAGGGGGGCTAGTGCTTCTATCTTCTGTTATGAGCTCGGGCTTAGCTAAAGCGCTAACATATGAGGAAGCCCTCCAGCAGACCAGTGTCAGCACTGACTTCGATCCAAGCGGGGTTATGGAAACTGTGACCACTTTTGCTGGTGACAACCCTGTAATTGTAGCTGGCGGTGTGGCAATTTTGGCAGTGCCCCTTCTTGTGTCTCAGTTGTTGAGCAAGCCTAAGCCATGGGGTGTTGAGTCTGCAAAGACTGCTTATGCCAAACTGGCTGATGATGCCAATGCACAGTTGTTGGATATAAGGCCGGCTCGCGAGCTGAAGGAGGTGGGGAGCCCGGATATCCGGGGCTTGAAGAAGAAGCCAGTTACTGTGAGCTACAATGGCGAGGACAAGCCCGGGTTCTTGAAGAAGCTGTCTTTGAAGTTCAAGGAGCCAGAGAACACCACATTATTCATTCTAGACAAATTTGATGGTAGCTCGGAACTGGTTGCTGAGCTAGTTACAGAAAATGGCTTTAAAGCTGCTTATGCAATTAAAG | |||||||||