| mature miRNA: TGACATGTTTAAACGTTGCAT species: Citrus clementina database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|63062745|gb|CX293891.1|CX293891 C05002B09SK FlavRip1 Citrus clementina cDNA clone C05002B09, mRNA sequence TGACATGTTTAAACGTTGCAT EST sequence (targeted fragment marked with yellow): ATGGTCAGTGCACACCTGGAAAGGGAGTTGTAGGTCCAAATGCTAGAAGAAAAACGAAGATAGTGTGTACAATTGGTCCTTCCACAAGCTCACGGGAAATGATATGGAAACTGGCAGAAGAGGGAATGAATGTGGCACGTTTAAATATGTCGCATGGAGACCATGCATCACACCAGAAAACTATTGATCTCGTCAAAGAATACAATTCTCAATTTGAAGACAAGGCTGTAGCCATAATGCTGGACACCAAGGGTCCTGAGGTTAGGAGTGGAGATGTACCTCAACCAATCATCCTGAAGGAGGGTCAGGAATTTAATTTTACTATCAAAAGAGGGGTTAGCACAGAAGATACTGTTAGTGTGAACTATGATGACTTTGTGAATGACGTAGAGGTTGGAGACATACTACTGGTAGATGGTGGAATGATGTCATTAGCTGTGAAGTCAAAGACAAAGGATCTGGTTAAATGCATAGTAGTTGATGGCGGTGAGCTAAAATCAAGACGTCATTTAAA | |||||||||
gi|110844862|gb|DY267181.1|DY267181 IC0AAA20DA10RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence TGACATGTTTAAACGTTGCAT EST sequence (targeted fragment marked with yellow): TCAAGGTATAAGCCGCCTAGCTTTCTAATTTAATTTAATTTTTTTTTCCGTTGTTTTACCATAGATTACACACGAACCCAAATCAAATCAGAAATTGGACCTCAACATTATAAAAATAAATGAGATGAACGTGTAAATTATTGCTCGAGCCACAACCACAACAGGGAGAATTGTACAAACAAATTAATATCAACCACTACACATTTTGAGAGCGACTACTGTATAAGATTAATGTTTGGTATCCAAGCAAAAAACTTGACCCCAAAAGGCCTCAATATCTGCCAATGATTCACAGTTGAAGCTACACCACACTTCTCGCATGGACTTTATCCTTTTGTATCAAAATCCTAATATCAAGAGCTGACACACACAACACAAGGCTTAGCAGGTGCGTGCATTTTTCTGTGCACGTCAGTGTAATTGTAAACATTCAATTGGCTCGAGCCGAAGTTAGCCCACAAGCACTCTCTCAGTTAAGATCCCAGGCGTTTAGTACATCATGGCACCAAAGGCATTGGACTATGAGTCTATGAATGAAAACGTGAAGAAGGTTCAATATGCTGTTAGAGGAGAGTTGTATCTTCGAGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATTATTTTTACAAATGTTGGCAACCCTCATGCTCTAGGACAGAGGCCATTGACCTTCCCTCGGCAGGTGGTTGCTCTTTGCCAGGCTCCATTTTTGCTAGATGATCCTAATGTAGGAATTGTCTTCCCTGCTGATGCAATTGCAAGAGCTAAACATTATCTTTCCCTGACTTCAGGGGGTCTAGGTGCTTACAGTGACTCCAGAGGTATTCCAGGTGTAAGGAAGGAAGTAGCAGAGTTCATTGAAAGGCGCGATGGTTATCAAGTGACCCAGAACTCATATTTCTCACTGATGGTGCCAGCAAAAGGAGTATGCAGACTTTAAATGTGTCATCCTGTGAAGGGGGAGGGGGGTTTTGGTTCCGTTCCCCCGTACCCCACGGAATCCCCTACCAAATCCCTTTTAGGGGGGTCTCTGGTTCCTACCACTTGGAAAAAAAAGAAAATTGGGGGCCTTGATTCTAAGACCTTTCCCCAATCATTTGCCCCGGGTCCGTTCTAAAGGGAATAACGGTAAAAACAAAGGGGGATTATAAATCCCGGCACCCCCCCCGGGCCCGGGTTCTTTTTGAGCTAACCTTAAAAAAAAAATGGGTATTTTTTTTTTAAAAAAAATTTATGGTTTTTTTGGAAAAAAAAATTTTTTCCCAA | |||||||||