| mature miRNA: TGACGACGAGAGAGAGCAC species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|182640160|gb|FF534573.1|FF534573 CASR433TF CASR Manihot esculenta cDNA 5', mRNA sequence TGACGACGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGAACTCTTTCGTTTTCTCTCTCGTCTTCTCTTCTCCTTTTCTCTCTGCAGTCGAATTCAACGAATGGAAACCCAAATCCTCTTTCCTCTTTGAAATCAGTTGGTTTAATCTGCTTCTGCTCATCGATTGATGACAATAAACCCTATCTGGAAGCCCAAGAGGAAAAGAAGACGAAGAGGAGAAGGGTAAGATCGTCTCTGCTGCTGTTTCTCAGTCAATTTCTAGCTGTTCCAATGGAGGTTTTGGTGGGTCCCACCTTCAGCATCGAGGTCTCTTCTCCTACGGCGTTTGTCGTTCCTTCTTCTCAGGATAACCTACATGGTTCGGATAGTTCGTCGTCGATTGGAGTTCCAGATGATAGCGAAGAAGAAAAAGACGAAGAAGAAGAAGGAGAGGAAGTCGACAGCTCTGTTTCGTTGAAAGGAGCTTTTGCTTGTTTGGATTCTTTGGAAGATTCTCTGCCAATCAAGAGGGGATTGTCGAATCATTTCT | |||||||||
gi|182640668|gb|FF535641.1|FF535641 CASRF77TF CASR Manihot esculenta cDNA 5', mRNA sequence TGACGACGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGAGCTTCCCTGATTGTGCTGTGTGCTCTCTCTTCGTCTACAGATCTTCATCACTCGTATTCTCAATTCCATCAAATTTTAAGGTTAGTCTCCGTTTTGGCTTTAGCTGTTTGACAGAATTATTTGAATGGATTCGAGTTCGAGTCAGCCAGAGTTTGATTACTTGTTCAAGTTGTTGATGATTGGGGATTCTGGTGTTGGAAAGAGTAGTCTTCTTTTGAGTTTCACTTCTGATACCTTTGAAGATCTTTCCCCCACTATCGGTGTTGATTTTAAAGTAAAATATGTCAATATTGCGGGCAAAAAGCTCAAACTTGCAATTTGGGACACAGCTGGTCAAGAGAGATTTAGAACACTGACAAGTTCTTATTACAGAGGTGCCCAAGGGATCATCATGGTCTATGATGTAACAAGGCGGGACACGTTCACTAACCTTTCTGATATATGGGCCAAGGAAATTGACCTATATTCAACAAATCAAGACTGCATCAAGATGCTTGTTGGAAACAAGGTTGACAAGGACAGTGAACGGGTTGTAACAAAAAAGAAGGCATAAATTTTGCTAGGGAATATGGATGCCTTTTCATTGAATGCAGTGCTAAAACTAGGGTTAATGTGCAGCAGTGTTTTGAAGAGCTTGTTTTAAAGATTTTAGACACACCTAGCCTCTTAGCTGAGGGGTCC | |||||||||
gi|164385919|gb|DB927348.1|DB927348 DB927348 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_021_D1 TGACGACGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGCGCTCTCTCTCTTCGTCTTTGCTGTTTCCCCTTCTTGATTTTTCTCTCACTATCGCCCTCTGCTGCAGCTAACTTCATTCAATGGCTTTGCCAAATCAACAAACTGTCGATTATCCGAGCTTCAAGCTCGTTATTGTTGGAGACGGAGGCACTGGAAAGACTACATTTGTGAAGAGGCATCTGACTGGAGAGTTTGAGAAGAAATATGAACCAACTATTGGTGTGGAGGTTCATCCATTGGATTTCTTTACAAACTGTGGACAGATTCGCTTCTACTGCTGGGATACAGCTGGGCAGG | |||||||||
gi|164380018|gb|DB921202.1|DB921202 DB921202 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_004_D1 TGACGACGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GAATCTATCCGTTATGAACCATCTCCCTATATCAGTTTCCTCTTCTTCTTCATCAATTATCAGTACCGTTTAGTATTTATTTATCTTCCCTGTCTATACTATATCTCACTCTCTTCCTCTGCAATCTGTTTCTACAAACCCTATATTCGATTTTCATGGGAGAATCTATTCCTGCTCGTCGCATATCCGTTCATCAAGCTCTTGGCGGCGGCGCAGTTGCTGATTTGCTGTTATGGAAGATATGGAGTGGAAATGTTACGATTCTAGGGATGGCGACTACCATGTGGATGCTGTTTGAGCTAGCTGGCTATAATCTCTTGTCTTTTGTAGCCAATGTGTTGCTCCTTCTCGTTGTTATTCTCTTCTTCTGGGCCAAATCTGCTTCGCTTCTCAACAGGCCTCTGCCTCCCCTGCCCGACCTGGAAATTTCTGAGGAGACTATTGTCAAGGCTGCTGGTGTGCTTCAAGTGTATGCCAATCATGCACTGTCAATTGCACGTGAGATTACAATGGGCAGAAATTTGAAATTATTCCTTCAGGTCACTGTTGGTTTCTGGATAGCGTCATATATTGGTAGTTTCTGCAATCTCCTCACT | |||||||||
gi|164405308|gb|DB934080.1|DB934080 DB934080 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_039_M1 TGACGACGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGTTCTGTAGTTCTTTTGCTGTTTCTACTTCCTATTTTCCACCACAATTCCCTGATTAAAGGATGCTTTTCTAGCAGAAACAGATTCGCAGTAAGCTCAAACATGACGTCGTTTTTGGTCTCTCGCGCTTCCGGCAACATCGCCGCCACCAGAAGGTTGCGCAATTCCTCTCTCTCGTCTTCACTTTCTCTCTTCAACCATACAGGCGTCGTCTCTCCAAGTTGCCTATCAGAACCAAACCCTAAAACCAACTATAGCATCCCTGCATTTTACCCATTTACTCAATCTTACTACTGGAGAAATTTTGAATTTTCCCGCAATGATCAGAACTCTAATTACTCCAATTTGAGGTTTGTTGAAGGAATTTCGACGCTATCGAGCTCTAAGAAGAACGAGGATAATAAGGAGAATGGAGGGTTTTCGAAAGAGAGAGATGTGTCTTGGATCGATTTGTACTTGCCGAGACTGGTTCGCCCTTATGCACGGCTTGCCCGACTTGATAAGCCGATAGGAACTTGGCTGCTTGCTTGGCCTTGTATGTGGTCAATTTCGTTGGCAGCAAC | |||||||||
gi|119010147|gb|DV447937.1|DV447937 CV01023A1H05.f1 CV01-normalized library Manihot esculenta cDNA clone CV01023A1H05.f1, mRNA s TGACGACGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGAAACATTATGCACAGACAAGTGAGGAGTGGCTCAAAAGAATGGACAAGAACTTGGGTTTGATTAAGCCAATAATGGAATCAACTTATGGCAAAGAACAATCTCTCAAGTGGACTGTCTACTGGAGAACATTCTTCATTGCAGTTGCAGAACTTTTTGGATACAACAATGGAGAAGAATGGATGGTTGCACTTTTCCTATTTAAGAAAAAATGAAGCATGAAAAAAACACCCTCCTCTCAGTTGAAGATGACATGGGAGCCATGGCTGAGGCGGAGAATCCCGGTGATAGAGCAAAGATCTGGTTGGCAAAATCGACGCCAACAGTAGGAGAGCTCCGATCGTTGAAGAGCCAACAGGATTGGCCCAATGGGAGGCAAATCTGGTTATTGTGGAGACTTTTGTTGGGTGAGAAGAGACTGTCGGTTGAGATGGAAAAAAAGCGGAGGGAAAGAATCTAGGGACTTGAATTTATTTGATATTTTTCGATGAATTAGCGACGGGATTAATTTTGTCACTAATATTTTTTCTGTCGCTAATCTGCCCTTTCGCGTCGTCAAAATGTAATAAGTTTTCCTATCGCAAATTTGTCGCAGATTCTATCGCTAATTATTGTTTTGCGACAGACATATGTTTCGGTGCAAATTTCGACGCAAAAACCCCTATTTACTTATAGTGAAAAAAAAAAAAAAAAAATCG | |||||||||
gi|164392357|gb|DB945512.1|DB945512 DB945512 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_021_L2 TGACGACGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGCATGTGACTTGTGTTAGCATGGGCAACCCTCATTGTGTAACATTTGGGAACAAAGAAAGCAAGGATTTACAGGTGGATGAATTAAACTTGCTTGAAATTGGCCCTAAATTTGAGCATAATGATGTGTTCCCAGCACGAACAAACACAGAATTTGTGCAAGTTTACTCCGATTCACACCTTAAAATGCGTGTATGGGAGCGTGGGGCAGGGGCAACACTGGCATGTGGAACTGGGGCCTGTGCAACAGTGGTTGCTGCTGTTCTTGAGGGTCGTGCTGGGAGGAAATGCAGAGTTGATCTACCTGGAGGGCCATTGGAGATCGAGTGGAGGGAAGAAGACAACCATGTATATATGACTGGCCCAGCTGAAGTAGTGTTTTATGGATCCTTATCCCTCTAATATGTCCTTCGAAGGAGCGTCATTTCTGCAAACTTCACCAGAATATAAATGGAAGCATAAGGTTGAGGCATCAACTTTCATGTGCTTCTCTCGTAGTCACTGGTGTTTTGTTGTCTGTGCTCTCCTCTATGTTGTGGATTTCAATCTCATCCAGTACACTTTTTATTTATGCAATTGAATAAGAGACTTGAGATACGTAACAGTCTC | |||||||||
gi|164391730|gb|DB923151.1|DB923151 DB923151 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_009_J1 TGACGACGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGCGCTCTCTCTCTTCGTCTTTGCTGTTTCCCCTTCTTGATTTTTCTCTCACTATCGCCCTCTGCTGCAGCTAACTTCATTCAATGGCTTTGCCAAATCAACAAACTGTCGATTATCCGAGCTTCAAGCTCGTTATTGTTGGAGACGGAGGCACTGGAAAGACTACATTTGTGAAGAGGCATCTGACTGGAGAGTTTGAGAAGAAATATGAACCAACTATTGGTGTGGAGGTTCATCCATTGGATTTCTTTACAAACTGTGGACAGATTCGCTTCTACTGCTGGGATACAGCTGGGCAGGAGAAATTTGGTGGTCTCAGAGATGGTTACTATATTCATGGGCAATGTGCCATCATTATGTTTGATGTTACAGCCCGTCTGACTTACAAGAACGTTCCGACATGGCATCGTGATCTCTGCCGAGTGTGCGAGAATATACCCATTGTTCTTTGTGGGAACAAGGTTGATGTCAAGAATAGGCAAGTCAAGGCAAA | |||||||||
gi|56921010|gb|CK645347.1|CK645347 si.05.B6.5 MCol1522 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence TGACGACGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CACCCTTGAGTTTACCAAAGCCCGAAACGGACAGACCGACCTCCTCAAAGACCGGAGAGGACGGACAGGCCTCCTCAAAAGCGTGTACTACAACAAGGCTTTGAATGCCGATGTGGCCGACCTCAGTGAAGGAGTTCATTTCTATGTAGGTCGGATGAATCAGGCACAACCTGATAAAGTCAGGGCAAAGATGCTAACCTCTTACAAGCTGGTCGCTTCCTTAGTACAATGCATGGATCATAAGTGCGCATGCATAGGGTACAAACCGGCCAGTTCTGCATTTATTGTCCTATAGCTCATCATTAATGTACTGTCTGATACACTTGTACAAAAGCATCCTTGCCCCGTCAGAGCGGACACAACAACAAGGACATCAACTTTATTCAGAGGTGTTTATACACCAAACTAACCCTAAAAAAGGATCTCTCCTTCTCTAGGAAAGGACCTCTCTCTCTCTCTCTCTCGTCGTCACACAGAGAGAATCCAAAATCATTATTCTCTTCTCTTCTCTATTTTACTTCCCTTAACTTCACTAAGTTCCCAGATTTGACTTGAGCGTTAGAGGGTTTCCACTAGAAACTTCCTCGGTGGACTCCTGACCGTGTTCTTCATCTTCTAGGTCCCCTTCC | |||||||||
gi|164402897|gb|DB933821.1|DB933821 DB933821 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_039_B1 TGACGACGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGCGCTCTCTCTCTTCGTCTTCGCTGTTTCCCCTTCTTGATTTTTCTCTCACTATCGCCCTCTGCTGCAGCTAACTTCATTCAATGGCTTTGCCAAATCAACAAACTGTCGATTATCCGAGCTTCAAGCTCGTTATTGTTGGAGACGGAGGCACTGGAAAGACTACATTTGTGAAGAGGCATCTGACTGGAGAGTTTGAGAAGAAATATGAACCAACTATTGGTGTGGAGGTTCATCCATTGGATTTCTTTACAAACTGTGGACAGATTCGCTTCTACTGCTGGGATACAGCTGGGCAGGAGAAATTTGGTGGTCTCAGAGATGGTTACTATATTCATGGGCAATGTGCCATCATTATGTTTGATGTTACAGCCCGTCTGACTTACAAGAACGTTCCGACATGGCATCGTGATCTCTGCCGAGTGTGCGAGAATATACCCATTGTTCTTTGTGGGAACAAGGTTGATGTCAAGAATAGGCAAGTCAAGGCAAAGCAGGTCACTTTTCACAGGAAGAAGAACCTTCAGTACTATGAAATATCTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTGGCACGCAAACTTGCTGG | |||||||||