miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGAGAAGAGGAAATCTCTCT
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|18019627|gb|BI138679.1|BI138679 F113P23Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence 

TGAGAAGAGGAAATCTCTCT
||||||.||||| . ||||.
ACTCTTTTCCTTAGCAGAGG

EST sequence (targeted fragment marked with yellow):
ATCAGGACTCTTGCTTTCATGCAAAGCAGTCGATACAACCTGATCAATCAGCTGCCGTCTATACTCATTATCAGGACTAAGGACTTTCTCCCAGAGATCACCATCCATCCGTTCTACAACATATCTGGCCTGCAGTTTGAACAATGAATTCTTGTTTGTGACATTGATTAGTTCATCATCACACTGTCCTCTTCGGTAGGCAACAACAGCAAGGGTGGGATCCCGCTTCTCACAATATTTACCAACAACACGTGAATCGTAATATGGGTTGGTGGTAAGAAAATGCTCTGGATTGTCGCCACTGTCGATAATGATTTTACCAAGAGCATTGTGAACATGCACATCCTGGCTTCCCTCACTGACTAGATGCTCCAAGAACTGAGTGAGCAAGCGGAGACGATTCCTTTTCTCACACTC


gi|73878565|gb|DT481303.1|DT481303 WS02531.BR_I02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02531_I02 5', mRNA sequence 

TGAGAAGAGGAAATCTCTCT
 .||||||.||||. |||||
TTTCTTCTTCTTTGAAGAGA

EST sequence (targeted fragment marked with yellow):
GGTTTTTTTTTTTTTTTTTTACGCAAAACGCCTCAATGAAATGGCACATTTATGTATATATAAGTTTCACAACCACACCCCCCTCCATATGCCCACACATCTGTTTGTTTTCCCCAAGATGATTGGCAAAAAAAACACCGAATGCAAACCATGTGCTATTCGGTAGAGAAAAAAGACGAGAGACAAAAGGCTCACCCAGAGTACATAAAATTAATTCAATTTCCACAACTATCTGAGATGGAAACATTAAATACAAAGAGTTCCTCAATCTGAGAAGGGGTTTATCTTGAACCTGTAGAGAAGTTTCTTCTTCTTTGAGGTAGAGTTGTCAACTGTGAGCAATATTTTTCCCAGCTCACCAACTTTGAAGCTGTTAGACACCACTGGCTCATTGGTTGGGGTCATTTTTGTGGGTTTTGTCATTATAATTGTGTATGCATCTTTAGAATCGGGCACGAATTCAGCACTATAACTCACCTCCCATCCAACAACTCGCAACTCCCAAACAATGAAACATTTCTCATAAATTATAATTTCCACAGTTTGCTTGGTTGCTGGTTTTACAGTTATCTCAGTAGCAGGATCAGCAAAAGTAAATTCGGGGTTGCAGTCGCAGAAATCCACGCTCAAGCCACCATACTGAATAGGAACTTGCTCAGGAGATACATATTTGAAAAGTGTCTCAGCAGATTTTGATGGGCCTGCGAATACAAATTTGCTTTTGGTTCTTTGTGTCATAAATGGACTGATCATTGTATAAAATGCAAGATACCACCAAGGGACATTGATGAACACCTGTTTGGCCACAAACTCAGGGTAATTGTCCTGA


gi|73873014|gb|DT475752.1|DT475752 WS0128.BR_B16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0128_B16 5', mRNA sequence 

TGAGAAGAGGAAATCTCTCT
 ||.|||||||||| ||| |
TCTTTTCTCCTTTAAAGACA

EST sequence (targeted fragment marked with yellow):
ACATAGATTGTTTGTATCTGCTGCATGGAGACATTAAGGCACGAATTACACAAATATGCCCATAATTCTCTCTGGTAATTAAATGTAGAGGGTCACAGAAATTTCCTCTTTTCTAGTCTTCTGTGGTAGCATATCTTAAAAATAGTAAAGGATCTAAATTCTCAGATAGTGTTTCGTTCAACAGTGAGTGAGGGTCCCAAGAATGATCGCAAGGATTTCCCTTCTAGTCCTTAAAAATAAAAAATAAAAAATAAAAAATAAAAAACCCCTTTCCTCTGATACAAATTTTTGAGAGCTACATTTTCAGAACTCATTATTCTGCTTGACCATCAGAAGAGACAATACAGACACATCTGTAGCTTTCTAAATTCCGTGACTCTTTTTTTTTTTTTTTTATTA


gi|38576054|gb|CK091729.1|CK091729 F121P36.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F121P36 3', mRNA seque 

TGAGAAGAGGAAATCTCTCT
 ||| ||||||||| ||.||
CCTCCTCTCCTTTAAAGGGA

EST sequence (targeted fragment marked with yellow):
GATTGATACAACTAAATGATACAGCTAAATCAATGAGAAGAAGTCTGGTTCCTCCACTCTTACTATACCCTCTTCACACTGTCACCATGGAGAACCACAAATCCCTCACTTGCCAGTGTTGCAACTGCACTTCTCAGATCATGAAGGTGAACTTCAGCAAAAGAGCTCTGCTTCTTTAGCTCATCCAGCAACTCTAACAAGCGCATTGAGGGCCCTTCGAGCTGCATCTTCTCCGTAATTATGCTGCGAGCAGCTGATGCAAGATTCTCTCTTCTCATCCTTTCGCTAGCTGAAACTCCAGTAGTAATGAGATCCATGTCAATAGTTCCAGTGGAGTGATCTGTTGCTGATTGTTGCATTGCAACTTCCAGGAGCCGAAAGGCCTCTATCACATCATGCTTCTCAACCAATTCTGAGAAACGTATCCGAGCCAGAGCTTCACTAAGGCGTATCAGACTTTCCATCTGCCTAGGTGTTGCTGTTATGACCTTTTTGCTACTGCCAGGGAAATTTCCTCTCCTCCTCATCTCAACATAT


gi|73880745|gb|DT483483.1|DT483483 WS02522.B21_L12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_L12 3', mRNA sequence 

TGAGAAGAGGAAATCTCTCT
..||||.|||||||||  ||
GTTCTTTTCCTTTAGATCGA

EST sequence (targeted fragment marked with yellow):
AAGGTAGTGATGGAATAGTGGGAATGGTGCTCCCAAACTCGTCAGAAGAGGTGGTGTTAAGACTCAAGAAAGGAGACGTAATACCGGTGCCTCTTGGAGCATTGTCTTGGTGGTACAACAATGGAGATCACTCAGAAGAAGTCGTTGTAGTTTTCTTAGGGCAAACTTCCAAGGCACACATCCCTGGCGAATTCACCTACTTCTTCTTAAGTGGAGGCCAAGGTATCATGGGAGGGTTCTCGACAGAATTCATTAGCAGAGCTTATAAGATGAACGGAAAGGAAGCGGACAAGCTTGCTAAAAGCCAGACTGGGATTTTGCTCATTAAGCTAGAGCCAGGAATAAGCATGCCCCACCCTAACACGGAAATTGTTGAAAAAATGGTGTACAACATTGATGCTGCTTTGGCTGACGTTGATGTCAGAGGGGGTGGTGTGTTTAAGGCATTGACAGCAGCTAGATTTCCTTTTCTTGAAGAAGCAGGCTTAAGCGTTAACCATGTGAAAATGGAAGCTAATGCCATGTACTCGCCATCATACACCGCCGACGGCACATTTCAAGTTTTTTATGTTGCTAGAGGCACCGGCCGCGTCCAGGTTGTGGGGATTGGTGGTAAGCGTGTCCTGGACACCAAAATACAGGCTGGTCAATTACTTGTGGTGCCAAGATTCTTCGTGGTTGCTCAGATTGCTGACAGTGAAGGAATGGAGTTTGTTTCCATTCTCCCTGGTACAAGCCCCGCCGTTGAAGAGTTTGCGAGCAAGAAATCAGTGTGGAATGCTTTATCTCCAATAGTTTCACAAGTTGCTCTAAGCGTGACTCCAGAGTTTGAGGAATTTTTCAAGTCCAATATGCAGAAGACCACTATTCTTATCCCGCCCACCAATTAAATCTGAAAAAAAAAAAAAAAAAA


gi|52494761|gb|CV241786.1|CV241786 WS02513.B21_D20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02513_D20 3', mRNA sequence 

TGAGAAGAGGAAATCTCTCT
||||||.||||||  || ||
ACTCTTTTCCTTTTTAGTGA

EST sequence (targeted fragment marked with yellow):
GTTAAGGCTGATTGTGTAAATCTCTTGGTCAAATACTACAAAGAAGCGAGAAGGGCAATTTGCTTAAGCAACGAAGAAGATGCTCGAGCAAAAAGGGATGGCAGTAGGGATTCACAAGCAGCTGGTAGAACAGCAAGTGCAAGAACCATGGAGGTTAAGTCAAAAACCAGGGGAGAAACAAGATGTTGCATGTGTTTTGATCCCTTCTCTATACGAGATGTATCAGTTGTCGCATTCTTTTGCTGTCATGCTTATCACATGTCTTGTCTTATGGATTCTATGCACACTGTTAGTAGCGGAAAAGGGAGTGGAGCCACTTCTGGGATATCGGAATACGATAGCAATGACGAGGATGAGGAAACCGTTTCTGGTGTTCCTCGGCTGAGATGTATCTTATGTACTACTGCTGCTAGTTGAGATAGTGATTTTTCCTTTTCTCAATATATTTTTTTTTCTCTCGGTGGGTGGTGGGGGGCTGGGGTGTTTTGATGATATTGTGCGAGTCTTAGCTTTCTTTTTTCGAGGCGGTTGTTTCTTGTTTTATTTTCTCTTGTTCATTCATTTATCATATAATGTGGCTGTTCATCAATTTTTCATTTTTGGCTGAGCTTCGTTTGTCAACAGATGTATCATATGGATCACAATTATATCGGAAAAGGTTAAACTAAAAAAAAAAAAAAAAAA


gi|73881523|gb|DT484261.1|DT484261 WS02524.B21_O15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_O15 3', mRNA sequence 

TGAGAAGAGGAAATCTCTCT
|||||||||||||.|| .||
ACTCTTCTCCTTTGGATGGA

EST sequence (targeted fragment marked with yellow):
CTGCTGTTTCAAATTTAATGTCTTTATGCAAGATGCTCTTAGCTATGGATTATGATTAGAATTTGTGGGATTTGATTGAATTGGAAAAAAAAACTAATATGGTTGAATTTAATCGGGCAGTTCATCAAAAATGGAAAAGGAAAAACCAAATCTAGTGATGGAAGATGATTTGGAGCATTTGTGCAAGCTTGTTGAAGTGAAAGATGGAGGTCCTGCTTGGATTCAAATGATGGATCGTTCTACACCGACTATGAACTATCAAGCTTGGCGTAGAGATCCTGAGGTAGGTTTCCTCTTCTCAAATTGGTGTTGATTTGTGTAATATGTGTAATTGGACTTGTTAATGCAGTCTTGGAAATGAAGTTGTAGTTACCGATGCCAAGTTCTTGCTTTATAATGCTGCTCTTTGGTAGACATGTGCAACCCTTGTGATTGAAATGGATTATGTTTTAATGGATTTTCTAGACTGGCCCTCCACAATATCGTACCAGAACTGTTTTTGAGGATGCAACTCCTGAAATGGTGAGGGACTTCTTTTGGGATGATGAATTTCGAGCCAAGTGGGATGACATGCTTGTACATGCTGAAACTTTGGAGGAGTGCCCTACCAGAGGAACCATGGTGGTCCAGTGGGTGCGCAAGGTGGGAAGAGTGTCCCCTTCGTCACTTGTTTCTATGAAATGTTTTGTTTGTGGTGGTTTTTTTTACTGAATTTATTGTTTTTTTTTTGGGTTCAGTTTCCCTTCTTTTGTAGTGACAGAGAATACATCATAGGCCGTCGAATTTGGGAGCCAAAAAAAA


gi|73868276|gb|DT471014.1|DT471014 WS01211.BR_M19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01211_M19 5', mRNA sequence 

TGAGAAGAGGAAATCTCTCT
 .||||||.||| .||||||
CTTCTTCTTCTTCGGAGAGA

EST sequence (targeted fragment marked with yellow):
AAAAAAAAAATAGAAAAAATCTGTAACCGAGAAGAGAGGCTTCTTCTTCTTCTTCTCCTTCTCTTACAAAAAATGATTTCGGTTCGAGCCGTTAACTCTTGCTCTATATTTCGCTCATCACCTCCCGTTTCTTCCTTCCGCTGCCGTCTCAATAGCCATTTGAGGACCACCACCTCCTCCTCGCACCATGACCGCTACTCCAAATCAGGCTTTGGCTTCCCTGTGTTCCGGTTCGACCTTCCAATTCTTGGTCATGGCGATGTACGGAGCTACTCCCTTCAAAGTTTCGTTGATACGGTGTTGGAAGAGCTGGCTTCTTATCGCAAACGCAAACGCCAAGGCATTTGCTCTGCTATCAAATTAACGACGGGTGGAGAGGCTTTAGATGATAAACTGGTGAACCAAGCGGTGGAGAAAGGATTATTAGTGGAGTTCAAGAAGGATTCAGAGAGAGTATTGCTGGCAGTGGTGCAGAGACGTGATGGAAAGAAGAATTGGATGGTGTACGANTCAGAATGGTGTTACTTCCTCGATTAAACCCCAACAAATTACTTATATTGGTTCCCGGTGGTTGATAATTTTGACCAAACCCAAATCTCAAGCTTTATTCAGAAAGCTCAGCAAAACTTGGACTC


gi|52497166|gb|CV244191.1|CV244191 WS0253.B21_P21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0253_P21 3', mRNA sequence 

TGAGAAGAGGAAATCTCTCT
 |||||.|||||| ||||||
TCTCTTTTCCTTTCGAGAGA

EST sequence (targeted fragment marked with yellow):
GGGAAAGTTTGGTTCCCTTTTTCTGGTTGATGGAGGTATTTTTCATCCTGAAGGAGAAAATTCTTCTTCAAATGCTGACAGTCTCCATGATGGTGATTCCCATCCTTCAAAAGATGCATCGGCATTGCCAAGAGAAACACCTAATCATCCTGCAAATATACACAATGTCTTAAGTTACGTTGCATCCTTGCTGGACATCACCAAACAAGAACTTGCAGAACTGAGCTATGCAAATGCAGTACGGTTGTTCTCTTATGAAGGTTCCAAGTTATTAGAAAAATAGAAAATTTATCGAGAATGTAACGCATTGTACCTGTTTACTTGCAATCTCAGTTCCGGAACGAGCAGGTGTGTCCATAAATGCTGAAAGCCTTCTGCGGTGCACATGAAAACCATGAATGGCAGCATGTGAGGTGGAAAGGAAAAGAGAGCTTTCCTTTTCTCTTTTTTTTTTTTTCTTCCTTTAGCCTTTTTATTATTTGCATCTACTAGTCTCGCAGTTGCAGAGTTGTAGCCAACTTCTGATTTTCTCCTTCGGCCTAGATATTTTCTCGGACGATTAATTCCATCGTTTGCAAAATAACTAAAAAAAAAAAAAAAAAA


gi|73886538|gb|DT489276.1|DT489276 WS02538.B21_M12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_M12 3', mRNA sequence 

TGAGAAGAGGAAATCTCTCT
|| ||||||||||| ||. |
ACCCTTCTCCTTTACAGGTA

EST sequence (targeted fragment marked with yellow):
CATTAATAAACTTCACTGCATCCTCGTGCCGAATTCGGCACGAGGCGAGTTTTTTTTTTTTTTTTTTGGACATAAAAGACGTTTTATTCTTCTCTTGTTTTCTTCTTTTGGAAAATGAGTACACTATGTTTCCCCTGGAAAAGACCTCTGAGCCCGAGGGGATTTCTACTAGCTACTTCCAATGGACATTTCCTCTTCCCAACAAATGAACAAATGAACTAACTGTACAATGGTGCCAACGCAGGGTTTCTTTGATTTATGGTTAAAAAAACCAGCTCCTCAAACCTCTGATGGTGGCAACTCCTGTGGCATTCAAACAAAATCTAGGCTTAAGATTACAGTAATACATTCGCCATCTGCATTTGAACATACATTTTGAGGAGGGAGGGGGAAGGATTGTGGAAATTTTGATAGAAAACATGTTTTGCTTCTCCATGACCCGATTCTGATGCAGCACCATTGGGCATCTTCCAGGATGTGCTGGATGGAGCCCGTCCAAGTATTGCATCGACCACAAGGAGCAAAACTTGGTATGTACATCTCCATTGCTCAAATTAAAGTTCCACCTCATGAAGTTCATCTCCAAAACTACCGCTACTTGGCATCCGCGTCATGGATTGGTCACTAGGCATAAATGATGAAGGGGTCATGCCCAAAGCCTCCCCTGGAGATTTGGATTCCATCACCTTAGGAGGACTAAATGAATCACTGAAGCTCCCACTCCATGACGCTGTTCGTCGTGAGTTGGATGAAACCAAGTCTTTCCCATTTATCATACCCCCCTTTCTCGTAATGTTATCCATGCTTGGAAATCTTTGCATAGCCATTGCTGATGAAGACGTGGAAGGGGGGGGCCCGGTA


gi|73868014|gb|DT470752.1|DT470752 WS01210.BR_K15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01210_K15 5', mRNA sequence 

TGAGAAGAGGAAATCTCTCT
|||||||| ||||||| . |
ACTCTTCTACTTTAGAAGTA

EST sequence (targeted fragment marked with yellow):
TTTGTGTGATGTATTGCTTTTACCATAGGTTGCCATGTCCAGAGTAACTGGACTTTGGTTCTGGGACTTCTTCAAGGAATCGAGTGATCATGCAATGCTATTCTTACTAATGGCTGAAGGCTCTGGAGTTCCTGAGTGCTGCATTGTAGTTGTACTTATATATCTTCTTGTTTTGATGATTCTTCTCTTGGAGTATTGGTGATTGGACTTTGGAGCTGTTCAGCGTTAGTTGGATTATGTTGTTGCTGATTTCAATTGATCTGCAGACGTGTACAAGAAAGCTCATGGGGTGTTTGGTGGCTTGATCGGGTGCTAAATATGCCTTCTGAAGTTTTAGAATCTTTTCTAAATTTGTTTCAATGCGCAGGTGTTCCAGGTTTATTTGCCAACTTCTCAATAGTTATTATTGCCTGAAGATATTGCCATGGCAGAAGTAGATATTAAGAGTTTTGATCCTCAAGAATTCAGACTATTTCAACAAATGGGCTCATGCTCACAGCATTTTAATGAAGATTTCATCTTCTCAGAAGAATCAATGAATGTGGAAACTCCTCAAATACTAGATAAAGGATTAATGGAATATGGATGCCTGCACTATCGG


gi|38586050|gb|CK101725.1|CK101725 F113P23.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F113P23 5', mRNA seque 

TGAGAAGAGGAAATCTCTCT
||||||.||||| . ||||.
ACTCTTTTCCTTAGCAGAGG

EST sequence (targeted fragment marked with yellow):
CTGTCATGAAAGCTTTAACAGTTGCTGAAACTTGATCAGGACTCTTGCTTTCAGGCAAAGCAGTCGATACAACCTGATCAATCAGCTGCCGTCTATACTCATTATCAGGACTAAGGACTTTCTCCCAGAGATCACCATCCATCCGTTCTACAACATATCTGGCCTGCAGTTTGAACAATGAATTCTTGTTTGTGACATTGATTAGTTCATCATCACACTGTCCTCTTCGGTAGGCAACAACAGCAAGGGTGGGATCCCGCTTCTCACAATATTTACCAACAACACGTGAATCGTAATATGGGTTGGTGGTAAGAAAATGCTCTGGATTGTCGCCACTGTCGATAATGATTTTACCAAGAGCATTGTGAACATGCACATCCTGGCTTCCCTCACTGACTAGATGCTCCAAGAACTGAGTGAGCAAGCGGAGACGATTCCTTTTCTCACACTCCTCCACTAAGGGCTCAACTGGCAGAAGAGAACGAACTGAAAGGAATAAGGCCTTTAATGAAATCTTCAGCACATTCATCATCAAAGAAGTTGTCCTACCAACTAAAGGAGCATTTCCTGGATTGACCTTTTGAACATAACCCTCAATATAGCGAAGCA