| mature miRNA: TGAGAATCTTGATGATGCTGCAT species: Lactuca sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|90521735|gb|DY983593.1|DY983593 CLSS6210.b1_C17.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS6210, mRNA sequence TGAGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GCCGGGGATTCCATCCACCCTTCATCCTTCCACACACGACTAGGGTTTCTCTGCCTCAAACCCAATCATAACATGCCAACTGGGTTTTGCTCCTTCTTCATCTTCTTCCGTTTCTTCTGCACAACACCTTTCAATTTTCAAAACCACGAAAGTCATTGGTTACTGGTGCGGCATCTTCAAGATTCACATGCCAATATTCAACTCTAGATAAGTTTTTGGTTAATGGGTAATGAGAATCTTGATGATGCTGCATCAGAGATCAATCGACTACATTCCATTTACTACGGTTGCTCTGAATCTTATATAGAAAGGTAAACGTTATTAATTTCCGTACGTGTGTGTTTCTGTATGCTTTATCATATTATTAATTAAGCCCATCATGATTTTTCTTATGTCTATAGTCAATATCAAGTAGCCTTGGGTCGATAAAAAGTGCTATTTTTGTTCTTATTACCGATCTTTTGGTTAATTAAGTTTCTCTTGCTAATGTAATTGAATGGTGTTTTGCGGATATATGATGGGATCTTAATAGGCTCTAACAATATTGTCCAAGATAAAGAAACGGAAACAGAAACCGTATAACGCACATATATACACCTTTGCAAACTATCTCGTTCTCTGAAGAAGAACAACATCATTGAATTACAGGATCTGCTGATAGAAAGCGGTGAAGTCATCTAATTCGTACTTATTTATTTTAAAATGATATCTTCGTACTTATTTATTTAAAAATCATATCTGGGCGTCTTTTAAATTTTCATAATCTTCATGAATTAGTAGTTTATATGAGATCAAAAGATTTTTGTTTTTCTTTTGGTGCCTCAGTTACAGATCTTAGGGAGCAACGAAATTTCCTTTNCTTCTANGCTGCCCGTGTATGGAAAACCATCTTACACGTCAAAGCTGACGTGGCCGACTTTCCCACGCGTAAAGGGCATGT | |||||||||
gi|90518888|gb|DY980746.1|DY980746 CLSS2730.b1_C11.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS2730, mRNA sequence TGAGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CGCGGGGGATTGTGGGAACAAGTTTATTTAGGCGGATTTGACACTGCCCTGGCTGCAGCTAGAGCCTATGATCGAGCTGCCATCAAGTTCAGGGGAATTGATGCGGATATCAACTTTCATATAAACGAATATGAGGAAGATATGGCACAGGTAAAGAATTTGTCAAAAGAAGAATTTATTCATATACTCCGTAGACAGAGCACAGGATTCTCACGAGGAAGTTCAAAATACCGAGGAGTAACCCTCCATAAATGTGGGAGATGGGAGGCTCGCATGGGTCAGCTTCTTGGAAAAAAGTATGTTTACCTTGGATTATTCGACAACGAAGTAGAAGCTGCAAGGTTGTTGTAATTTTATAATTGACAATTAACATGTTAACCCACCCATATGAACGAAGGCATCATTCAACAACATTTGCAATTTATATTGTCTGAATTCAGGGCTTATGACAAAGCTGCCATTAAATGTAACGGCAAGGAAGCTGTCACCAACTTTGAGCCACGCATCTATGGAGCGGATATAAGCTTGGAAGCCATGGATGAAGAAGCTAGTGGTCACAATCTTGATCTCAACCTCGGGATTTCTCCCACTAAAGATAGTCCAAGGGCAAATTTACAGGCACAGACACAAGCTCAAGCTCCGTTATTATGGCCTAGTAACATGTATTATGGTTTTACACCAAACAATGAGGAAAAAGCGATAGGAATGGCATCTGCGAATAATATTCAAGGGCTCTCAGCATGGCAAATGCAAATGTTGGGTGGCAATTATGGCATGGGTGTGACATTTCCAATTCCGGTTTCTTCTTCTATTGCAGCATCATCAGGATTCTCTTCTACTACTACTACTGTTTTCTCGAATGGGGGTAGTATCCAACAGCCAACTAACATGGCCAGGGGCACTTCTTCTTCGATATACTTTCAGTAACCAGATTGGTTGATAAAGCAAGCCCATGTGACTGCTTTGCTTGA | |||||||||