| mature miRNA: TGAGCCGTGCCAATATCA species: Triphysaria pusilla database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159582999|gb|EY134999.1|EY134999 CBTH474.g1_C23.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusill TGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTATGAAATTGATCAAATTATTGGCAACAGTGACGAAGTTTGAAATATATATCAGGGAGGCCTAAAAATCACCGAACAACTTAGACAACTTAATCGGGGGGCCGGCCTAATATATATAATTTTTTCGAACGAACTATGAATAAAAAATACACTATTTATATTTTTTCTTAACAAATTACAAATAAAAATACACTACTGCACAAAAAAATTGGGGGTGAGACCCCCCTGAACATGTAGAAGCTTCGCCCATGATTGGCAGGGCTTTCATTTCCCAAATAAGGCTATGAAGCTTATGATGCTTAGTTTCTTGCCTACAACTCTTGGATCTTCCAATTGAACAAGCAACTAAACATGTTTCCAACAACAATTATCATAAAATAATCACTTAATATTAAATGTAAAAGAATTTCCAGGATTTAGACTTTAAGAACATAATAATACTTAATCAATTATCATAAAATTGACGAGACGAGACGAAAAGCAAAGCGGAACATGATATTGGCACGGCTCAATCAAACTAAAGGACCCAATTCTTGGGAGATTTGATTTGATTGAGCCGTTCCAACATCATAACTAGCTACTACAAAAAGTGTGGCTTAGTTTTAATTAAAAAAAAAAAAAGTTTACCTTTATTGCAATCCTCACGTGGAAGTTTGAGTCGGATCATCAAGTCATTGCGATTTAGGATGTCTTGGTGAAGAGAA | |||||||||
gi|159754344|gb|EY131466.1|EY131466 CBTH3061.b1_J22.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): CGCCATTAGTGACGGAGCAGGGTTTCTACTCCAATTATCCCTTCCTCACAAAATCAAGCACCGGCCAGGGCGAATCATAGTCCCTGGCTCTCTGAATTATCATCTCCCATTACCCTATACAATTCTCCTAGCTCCCTGAGTAGCCCACATTGAATATCCCCAAATTAGTTGAAAGAGAAAGGGGAAAGGAATAAGGAAATAGAAGAGGATATGGGAGATGTATTGGCATGGCTTATGTTCTTCTTCATACTCATCGCTCTCCTCGTTATGATCGTTTTCCAGCTTATGTGCTTGGCGGATTTAGAGTTCGATTACATCAATCCTTACGACACGGCCTCTCGAATAAACAAATTGGTTTTACCAGAATTCATCACACAAGGAGTTCTAGGCGTTCTTCTCCTTGTCACCGGGCATTGGGTTATGTCACTTCTCTGTATCCCCTACTTGTACTACAATGTCCGCTCGTACCTTCGGAGAGAGTACCTTATCGATGTAACTGAGATCTTTAACTTGCTCAAATGGGAAAGGAATCAAAGACTTTTCAAGCTAGGTTATATCATACTCCTGATCTTCACGTGCTTGTTCTGGATGATTTACAATGCACTCAAAGAAGATGATTAGTCGAGAGAATTTGTTTTTCTTTTCGTGCCTTGGTGGCGGGAGCCAGAAGACAGCTGCTGGGTTATGTTAGATGTGGGTAGCTTCGACTGGCTCTTTAAGAATCTCGCTTAGAGCTTCGTTGAGGATTT | |||||||||
gi|159732390|gb|EY131240.1|EY131240 CBTH2948.b1_G18.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): GAACGACCGAGCGCCGCGTAGTCAGGGAGATCCGAAGAAAGGAGCATCGATGGGCTGCTGTTGCGATGACGATGAAGAAGCACCTTCGCTGGCGCTACCTTCTGACCTCCTCGACCCGCTCAATTCCTCCGCCGTTGCCTCCGACGTAATCACCATCTCCCCGATGAATTCCAACTTCTCGGCTTTGTTATGCAAGGACACTCTCCAGACAATTCTGGAAAAACTTCCACTTCCTGACCTCGCCCGTGCGGCCTGCGTCAATCGCATCTGGCGACTGGTGGCCTCCGATAGGGACATTCAGATTCGCGCCTTTATGTCTCCATGGAAGCTTCGAAATGTCATTGGAAAACCTAGCTCCGGCGGGTTCTGGAGAGACAACTCAATTTCCAAATTCGCCGTCTCTCACCGAATATCTCGTTGCGACACCATCGCCAGCCTTGCCGTTAAGTACTCCGTGCAGGTTATGGACATAAAGCGGTTGAACAACATGATGAGCGAGCATGGGATATACTCGAGGGAGCGACTGCTGATCCCTGTGAGCAAACCAGAAATTCTGATAAACTCCATATGCTACATTGAAGTGGATACCCATGCAAAAAGAGAGGTTGCTGTACTGTATCTTGACGATGGGCCTGATGGACATCTTAGCCGCCTTTTGAATAGGGTTTCCACAGAAAGAGGCAAGAAAAAGGTGATAGACTCATTGAAGAGGAGCATGCATGTCGATGATGGCACTGCTCAGTACTATTTATCTATATCAAATGGTGATCCTCGAGCTGCACTTACACGATTCCATG | |||||||||
gi|159762673|gb|EY127741.1|EY127741 CBTH11900.b1_H24.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusi TGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): ATCCTCATTTCATCTCCACATTTCATCATCCATCCCAAATTCTCTAAATCAGAAAATCGGAAACGGAGGGTTAGGCGTGAGCGGCTGAGCAGGGCTTCGAGTGAGAAGCGGCGAATTCGCGGTGGTGAGTGGAGGAGAAACAGATTTCGGTGGTGGATCAAAGGTGATAGCGAGAGGGAGAGAGATGGTGGCGGTGGCTGAGGTGGGGGCTAAAGACGGCGTGGACGGCCTTTGGCGGTGGCGCTGGTTACAGATGGCGGCGGTTGATGGGTTTGGTATCTGGTTTGGCACGGTTTAACCCGACGGGGACTGAGGCGGAGGGATGGTGCGACTGAATTCGTCGGGGCAGCAAACTGCCATGGGTTTCGAGGTCGAGGTTTTGGTTTGGGTCGGTGACAGCAAAGACGGGCTGGTGTTTCACGGCTGCGAGCGACGGCGAGGAATTTCCAGCCGGCGTTGCTCGGTGAGCGGCAGTCAATGGCGAAGACTCGGTGGTGGTTTGGGCGGTAGTGAAAGGAACGACAGTTCGGGTTTGGGATTTCCGGCAAGGGCTCCAGCGGTGCCTCGATAAGGTGGTCATTCGGGCTCGACGGCAAGGCGGTCGAGAATTGCTGCGTTGGTCAGGTTAGCACACAACGGCAATGAGTCGGGATGTATTCATACATATATGGGTTCGGTTT | |||||||||
gi|159776703|gb|EY127274.1|EY127274 CBTH11688.g1_P17.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusi TGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTGGGTCAAATCTCTGCTCAACAATATACTAAAAAATCACATTGCAACAAAAGTTTAAATTCAAACAAACGCATATGAGTCCATTATTTACGTCAGATCGACTTACACAAGTTCATAATAACCCTTTCCAGAGTATATCAAATACATATTCACAACTGCGGAGGAGACAAAAAAGCAACATACTATGATAAATTGATAATCACGGCTTAAGCAATAAATAAATAAATAAGGGTCTCAGTTATCCTGTTTGAGCACCCGCAGAATGGTGAGGAACAGATTGAGCACGTCCAGATAAAGGGTGACAGAAGCCCAGATATACTGATCGTAGGTGAAGCGCTTGATCAGGTTGTCAGTATCGTAAACAGTGTACCCCGAGAAAATTATGGCACTGATCGCGCTATAGATGGCAACAGAAGTTGATCCAAATGGGAAGAACATCTGAATAAAGCCAGTCAAAACCAAGACGAAAAGACTAGTAAACAGGATTGGGCCGAGGTAGCTAAAGTCCTTGCCCTTCTTGGCAGCCCAGAAGGTATAAGCCGTCAGAGACGCAACTACAGCTGATGTCAAGATTAAGGCTTCAAGCACAATTCTTCCTTCGGTATTGGCACAGCTCACACCAACGGTTATACTCAGAGACGCAGTAAAGAGCCCAAGGAAAATC | |||||||||
gi|159733156|gb|EY164458.1|EY164458 CBTN9863.b1_M18.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): GTCAAAAGGGCTCTTCTTTTTCGGAGGTGAAGAAGATAAGGGCAACAAGCAAAGTTCATCTCTATAAACTCAAAGTGGGCAAGGAGAAGTTTTCTTGATTTTTCTGTAAGTGAATATGATTAATGTTATGCATTCAATGGATAGGCCCTTAAATCAATTGGAAAAATCCCTAGATCCCCAATTATGGCATGCTTGTGCTGGTGGTATGGCTCAAATCCCACCTCTTAATTCCCAAGTTTATTACTTCCCACAAGGCCATGCTGAGCATTCCAATAATACAAATATTAATTTCAATAAATTCCCCCAAATTTCACCTATAATCCCTTGCAAAGTATCTTCTATTAAGTATTTGGCCGATTCCGAAACCGACGAGGTTTATGCCAAGATTCGATTAGTCCCATTGAGGCCCAACGAATATGATTCCGATAACGAAAACGGGTTTTCGGGCCTTGACAAGATCGACGATAAAGAAAAGTCCAACTCGTTCGCCAAGACCCTAACCCAATCTGATGCTAACAATGGTGGCGGTTTCTCGGTCCCACGTTATTGCGCCGAGACAATTTTCCCGAGGTTGGACTATTCATCCGACCCGCCTGTTCAGACGATCCTGGTTCGTGATGTTCACGGTGAGGTTTGGAAATTTCGGCATATTTACCGTGGTACCCCTAGGCGCCACCTCCTCACGACGGGATGGAGTAACTTTGTGAACTCGAAGAGGCTCGTCGCAGGGGACTCTATCGTGTTCTTGCGGGCTGAGAA | |||||||||
gi|159697275|gb|EY179355.1|EY179355 CBTI6871.b1_N14.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): AAACAGAAGTCCATGCATATTCTCAACACACTTTTTCCCTACCCTGCATGGGCTGAAGCTGAGCCGGCCGTGAGGTATCACGGCGAAGGAGTATCTATGAAATGAGCCATTTCCCACATAGCAGATCACTCTATTATCGTCGCTCATCTCCTTCCTCCGCCCATAAGTAATAGCCNAGAAAATCTGGTTGGTGAAGGTTCTCTTGGTCGTGTTTATAGAGCTGAACTTCCCAATGGAAAGATTATGGCCATCAAAAAGGTCGACAACGCAGCAGTGTCGCTGCAGGAGGAAGATAATTTCCTCGAAGCCATTTCGAATATGTCACGTCTGAGGCACCCAAATATCGTTGCACTGGTTGGATATTGTGCTGAGCATGGGCAACGCCTTCTGGTTCATGATTATATCGTTAACGGTAGCTTGCATGATATGCTTCACTTTGCCGATGAAAGGAGCGGCCTGCTGACGTGGAACGCAAGGGTTAGGGTGGCTCTTGGCACGGCTCGAGCTTTGGAGTACTTGCATGAAGTGTGTTTGCCTTCTGTTGTACATAGAAACTTACAATCTGCGAACATTTTATTGGATGATGAGCTCAACCCTCATCTTTCAGACTGTGGATTAGCCGCTCTGACACCAAACACAGAACGACAGGTTTCATCAACCCAGATGATAGGCTCATTTGGTTACAGTGCGCCAGAATTTGCCTTGTCTGGGATATACACTGGTAAAAGCGATGTATACAGCTTTGGCGTCCGTATGCTGGAGCTTCTGACCGGACGAA | |||||||||
gi|159620524|gb|EY133351.1|EY133351 CBTH3999.b1_N15.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): CCGACCAGGGCGAATCATAGTCCCTGGCTCTCTGAATTATCATCTCCCATTGCCCTATACAATTCTCCTAGCTCCCTGAGTAGCCCACATTGAATATCCCCAAATTAGTTGAAAGAGAAAGGGGAAAGGAATAAGGAAATAGAAGAGGATATGGGAGATGTATTGGCATGGCTTATGTTCTTCTTCATACTCATCACTCTCCTCGTTATGATCGTTTTCCAGCTTATGTGCTTGGCGGATTTAGAGTTCGATTACATCAATCCTTACGACACGGCCTCTCGAATAAACAAATTGGTTTTACCAGAATTCATCACACAAGGAGTTCTATGCGTTCTTCTCCTTGTCACTGGGCATTGGGTTATGTCACTTCTCTGTATCCCCTACTTGTACTACAATGTCCGCTCGTACCTTCGGAGAGAGTACCTTATCGATGTAACTGAGATCTTTAACTTGCTCAAATGGGAAAGGAATCAAAGACTTTTCAAGCTAGGTTATATCATACTCCTGATCTTCACGTGCTTGTTCTGGATGATTTACAATGCACTCAAAGAAGATGATTAGTCGAGAGGATTTGTTTTTCTTTTCGTGCCTTGGTGGCGGGAGCCAGAAGACAGCTGCTGGGTTATGTTAGATGTGGGTAGCTTCGACTGGCTCTTTAAGTTATGCCTATTTCCTTAATCTCGC | |||||||||
gi|159582998|gb|EY134998.1|EY134998 CBTH474.b1_C23.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusill TGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): AATGGAGAAAGTGACATTATTGTGCCAATTGATAAAATGTCATCAACCACTAATATATGTCTATAAACATCTAATGATAATATTTATATTATAAGAGTCCCAAGTTTTCAATCAGGCCAACCAACGACCAACATTTCCAACTACCAAAATCCTCTTTTTTCTTCCCTCCAAAATCCAAATGTACCCATTTTATTATTTTTCAATAAAAGGACATTTTATTAGGTTTCTCACTTTGTTCTATAATTAGGTATTCTCTTCACCAAGACATCCTAAATCGCAATGACTTGATGATCCGACTCAAACTTCCACGTGAGGATTGCAATAAAGGTAAACTTTTTTTTTTTTTAATTAAAACTAAGCCACACTTTTTGTAGTAGCTAGTTATGATGTTGGAACGGCTCAATCAAATCAAATCTCCCAAGAATTGGGTCCTTTAGTTTGATTGAGCCGTGCCAATATCATGTTCCGCTTTGCTTTTCGTCTCGTCTCGTCAATTTTATGATAATTGATTAAGTATTATTATGTTCTTAAAGTCTAAATCCTGGAAATTCTTTTACATTTAATATTAAGTGATTATTTTATGATAATTGTTGTTGGAAACATGTTTAGTTGCTTGTTCAATTGGAAGATCCAAGAGTTGTAGGCAAGAAACTAAGCATCATAAGCTTCATAGCCTTATTTGGGAAATGAA | |||||||||
gi|159595952|gb|EY170071.1|EY170071 CBTI2513.b1_A06.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): AAACACCATCTCAATAACCCATATTTCTTTCTAAAGAAACAAACAAACAAAAAATGTTTAAATCTCATGAGCTCCCCGAATGTATCTACGAACCAAACCAGCCCATTTTAATCCCTCCCAAAACCTCAACTCCTACAAAAACTATATATCTCTCAAATCTTGATGATCAAAAGTTCCTAAGATTTTCAATAAAATATCTCTATATTTTCAGAAAAGCCGTCAATATAGAAACCCTTAAGGAATCTTTGTCTAGGGTTCTTGTTGAGTATTATCCGTTTGCCGGGAGGTTACGAAAGTGCGTCGATAACGACGAAGATGGTAAGCTTGAAATCGACTGCAACGACGAAGGAGCTGTTTTTGTTGAAGCCAAAATGGACTTAAGTGCTGATGAGTTTATAGAGTTTTTTGCGGCAAAGCCAAACAGGTCCTTGAGAAAATTCATGTACATAGTCGATGCACCTAATTTCTTGGATATTCCACCTCTTGTAATTCAGGTGACTAATCTAAGTTGTGGAGGCATAATTTTGTGCACAGTAATTAATCATTGTTTCTCCGACGGTATTGGCACGTCTCAATTTTTACACGCCTGGGCCCGCACGTGCCAATCTATCAATTCTCCCAATCCCACGAATTTACTACCACCAATCCACGACCGCCACGTGTTAAGTCCGCGTACCCCACCACAAATAACATTCCCCCACCCAGAATTTACCAATAATAACCCTAGTAATATCCCACAAACCAAC | |||||||||
gi|159741383|gb|EY129115.1|EY129115 CBTH1881.g1_B16.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTGGAAAATTAAAAACAATTTAATTCATAAATGAGATCAAAATCCTTCCAGAAAATCTCAGCATAGTTCAATAGCAAAACTTAAAACGTACGAAAGAGCAATATAACATCCCAGAATTACGGCATCAAATTGCCTTATGTGGTAAGGTCGAACCAATAAAACAATAGTTACCATAATTCTATTGCAAGAAAAGCATAACCTAGCAAGCAGCATCCTCCGACAAAAAGGCTGTTCCGGGTTTACGCCTCGCCAATGGCCCATGACATCCATATAGCTTAGCATTGACACCATCAGGCTGAATCTTGTTCTCAGATTTCCACTTCACATAGTCAGCTCGGTTGAACTTAGTGAAACCCCATTTCCTGCTAACAATGATCTTTTGACGGCCAGGGAACTTGAACTTGGCACGGCGCAAAGCCTCCTGAGCATGGTGGCTGTTGCCATCTTTGCAACGCACAGATAGAAGAACTTGGCCAATAGCTACACGAGCACATACACCCTGAGGCTTGCCAAATGCACCCCTCATTCCAGTTTGGAGCCTATCAGCACCAGCACACGACAACATCTTATTAATACGCAGCACGTGGAAGGGGTGGACCCTGACCCTCAAGTGGAAAGCATCCTTTCCAGCAAACTTGGTCATGTACTTGTTGCAAGCAATACGAGCAGCTTCAAGGGCCCCGCTTGACACATTCTCCTTCTCCCAACTGACCAAGTGCACACAGAATGGGAACTCATCAACACC | |||||||||
gi|159758368|gb|EY142418.1|EY142418 CBTH8164.g1_H01.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTCGCATTGCAACAATAGCTTAAATTCATAGCACCAAGCGAGTCCCTTATACGTCTCAGTGTAAATATCAACCACATATTATTTATAAGTGCAGAGGACGAAATACAATTTCCACACCATAGTCTCTCCATATCTACTAAAAGAGAAGGCAAAAAAAGCAACATCCTATGATAATCTTGAAAAACAAAACACAGTTTATTTAAGCAATAAATAAACGAGATTCTCAGTTGTCCTGTTTGAGCATCCGCAGAATGGTGAGGAACAGATTGAGCACGTCCAGATAAAGGGTGACTGAAGCCCAGATATACTGATCGTATGTAAAGCGCTTGATCAGATTGTCGGTATCGTAAACAATGTATCCCGAGAAAATGATGGCACTGATCGCACTATAGATGGCAACAGAGGTTGATCCGAATGGGAAGAACATCTGAATAAAGCCCGTCAAAACCAAGACGAAAAGACTAGTAAACAAGATTGGTCCAAGGTAGCTGAAATCCTTGCCCTTCTTGGCAGCCCAGAAAGTATAAGCAGTCAGAGATGCAACTACAGCGGATGTCAATATTAAAGCTTCAAGCACAATTCTTCCTTCGGTATTGGCACAGCTCACACCAACGGTAATACTCAGAGATGCAGTAAAGAGCCCAAGGAAAATGAAGTTCAACGGGTGTTTTTGTTGATACACATACAGTGGCCACAACAATATGA | |||||||||