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mature miRNA: TGAGGGAGCTTTCTTCTGTCC
species: Brachypodium distachyon
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|270431399|gb|GT813150.1|GT813150 CCYO1746.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDN

TGAGGGAGCTTTCTTCTGTCC
| ||||||||||||||||||
AATCCCTCGAAAGAAGACAGT

EST sequence (targeted fragment marked with yellow):
ACTGGGCGGAGGGCCATCGATAGCACCCGGCCTCATGGGGAACAAAATCTTGTGTCATGGGCACGACCTCTTTTTAATGACAGAAGAAAGCTCCCTAAAATGGCTGACCCGAGACTGGAAGGCCGATATCCCATGCGTGGTCTTTACCAAGCACTTGCGGTGGCTTCGATGTGCATTCAATCAGAGGCTGCATCCCGTCCACTTATTGCGGATGTTGTGACCGCCCTTTCCTACTTGGCTTCTCAATCATATGACCCTAATGCGCCTCATGCTTCAAGAAAGCCTGGTGGTGATCAGCGAAGCAAGACTGGCGAAAACGGCAGGGTGGTCTCCAGGAACGATGAAGCTGGCAGCTCTGGCCACAAGTCACCAGGCAAGGACAGGGAGGATTCCCCGAATGGGCTTCCAGGTATCGTGAATAAGGATCTCGAGAGGGAGCGGATGGTAGCGGAGGCGAAGAGATGGGGTGACCGGGAACGGATGGTGGCGGAGGCGAAGATGTGGGGTGACAGGGAACGGATGGTGGCAGAGGCAAAGATGTGGGGTGAGAATTGGCGGGAGAAGAAGCACGCCGACACAAACGGGCAGGGGAGCCTGGATTCTCCAACCAGAAATGGCTAGGGGCATTCTTCGAAGTTTCCATCCATCCATCCATGCATGCCCTGTTTTTATTTCCTACACTATTTTCTTCAGTTGGAGGGGAGGGGGAGGGTGGT