| mature miRNA: TGAGGTACCGGTACATCGAGG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88240102|gb|CI239264.1|CI239264 CI239264 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat TGAGGTACCGGTACATCGAGG EST sequence (targeted fragment marked with yellow): TTTTTTTTTCAACAAATATACCTCAGAATGAAGTTTTGAGGGACTAAATTATATGTAGGGCGGTAGATTGATAATGGTTTATAGAGATTTGCTCCGATCAAATAAAAAATATCTTGAGGTATCGGTACCTCACGGTACTAAATCTTTTCTAATTGTTGGATTTGACGATACCTATCCTACCGAGCTATATCTAGTGATCAGAGATGATTTGGTACCGTGAGGTACCGGTACTTCGAGATATTTTTTTGCTAGACTGGAGCAAATATCTGGTTTATATGATCGGTAACGAGAGCAAAGCAAAATATGTTTTAGGAATTCTGGATTCATTAGCCTAGCTGCCTAGGCGGTGATGGTGCGGCCACCGTCGACGCAGATGACCTGCCCGGTGATGTACGGCGCCGCCGGCATGCAGAGGAACGCGACGAGCGACGCCACCTCCTCGGGCTCGCCGATGCGGCCCATGACGACCCGCGCCGCCTCCCTCTCCTCCATCGCCCGCGCCGCCCCCGGCTCCAGCGCCACGCCGCTGCTGCCGGCGATATCGGTCC | |||||||||
gi|58601946|gb|CK012474.1|CK012474 30820sicef_0204.z1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica Gr TGAGGTACCGGTACATCGAGG EST sequence (targeted fragment marked with yellow): GCCCCCCTCGAGTTTTTTTTTTTTTTTTTATGAATAAAAACATGCATTTGAAGATTTATTTGGCATAGATAGGGATGTAAATTAAGCGAGATTNGCTTTGATCCAACAAAAAGTATCTTGAAGTACCGGTAACTCACAGTACCAAATCATTCCTCATCGTTGGATATATCAATGTCCATTCTACCCAATTAGATATAACGATCAGAAATAATTTGGTGTCATGAAGTACCGGACCTTGAGGTACTGTTTTTTTTTTTTTTTACCGGAGCAAATCTCAAATTAAACGGGTCGATCACAAGGTGCGGTCGTCAGCAGGCGCCACGGCGGAAGCCGACGGAGCCGCCGACGACGTCGTAGAGCACCTCGTGCGTCTGCTGCTGCACGTTCCCGATGAAGCCGAGCGCGAAGTCTCCCGGCGTCGGCACGAACGCGAGGCACCCCTCCACCATGACTCCCATCGCGTCCAGCCTCACCACCGCGCCGCCGTCGAACACCAGCGACACCGCCGGCACCGTCACGCTCGTGAACCGGACGAAGTCGTAGCAGGTGTCCAGCCCGGGCCTCCCTCCCGGCACCCGCGGGTACGCCGCCATGGCGCTCCGGAACGCCAGCCGCAGCG | |||||||||
gi|89176636|gb|CI111352.1|CI111352 CI111352 Oryza sativa (japonica cultivar-group) Panicles two weeks after flowering Oryza sati TGAGGTACCGGTACATCGAGG EST sequence (targeted fragment marked with yellow): TTTTAGGTAGCAAAACTGTTGAAAACTTTATTATTTACTTTGCTCGAAATACAATATCGACTAATTGGAATATTAGATCATTAATCAGAGCTTGCAACACTGAAACTCTCTATTGCTGAAGTACTCTGATTAATTAACATCCTTCTGTTGCGTCATTGACGCTCCACATTGGTTTAGATCTCAGCATCCAATGTAATTAGAGGTTAGTTATCGTCCAACAAAAAGTATCTCGAAATACCGGTACCTCACGGTACCAAATTATTTTCGATCGTTGGATCTAGCTGAGCAGATGAGTTATCGGTACCGTGAGGTATCGGTATCTCGAGATAATTTTTGTTGGACCGAAGCAA | |||||||||
gi|88345932|gb|CI632405.1|CI632405 CI632405 Oryza sativa (japonica cultivar-group) germinating seeds Oryza sativa Japonica Group TGAGGTACCGGTACATCGAGG EST sequence (targeted fragment marked with yellow): GATGATGATTTGAGGTGTTCTTGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGATATATGGACGTTAATTTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAAAGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCTGGGTGGGTTGGGCATCGTTAGATCCAACGATCGGAAATGATTTTGTACCGCGAGGTACCGATACCTCGAGATACTTTTTGTTGGACCGAAGAAAAACTCATATAGGAGATGGGTGCTCTTGTTCGTAGTTTGTTTGATTCTGTTATTTTTTTTCTCTTGTACATATAAAAGAGATTGGGATTTGTCCAAAAA | |||||||||
gi|89181997|gb|CI113503.1|CI113503 CI113503 Oryza sativa (japonica cultivar-group) Panicles two weeks after flowering Oryza sati TGAGGTACCGGTACATCGAGG EST sequence (targeted fragment marked with yellow): TTTTTTTTTAGATCTCAGCATCCAATGTAATTAGAGGTTGTTATCGTCCAACAAAAAGTATCTCGAAATACCGGTACCTCACGGTACCAAATTATTTTCGATCGTTGGATCTAGCTGAGCAGATGAGTTATCGGTACCGTGAGGTATCGGTATCTCGAGATAATTTTTGTTGGACCGAAGCAAATCTAATATAAGTAAGCATGCCGTGCTGTAAATGCATGTTAGACAAAGCCCGGAACCGCGTAATATGCAATCAGAATCGGCAGAGAGATCAATGTTCCGAATATAACCGCCGTGCTGAGTACATCGGCATGAAGCCCATACTCCTTTGCGAAAACGAAGGAAGCAATCGATTGAGGCAGTGCGGCCTGTATGATGGCGAGGTGCAGGACGTCGCCGCGGAGGCCGAGGGCGGCGGCGCCGACGAGCGTGGCGAGCGGACCGG | |||||||||
gi|88990729|gb|CI108116.1|CI108116 CI108116 Oryza sativa (japonica cultivar-group) Panicles less than 5cm stage Oryza sativa Jap TGAGGTACCGGTACATCGAGG EST sequence (targeted fragment marked with yellow): AACGGTTATAGCACGTTATGAATAAAAACATGCATTTTGAAGATTTATTTGGCATAGATAGGGATGTAAATTAAGCGAGATTTGCTTTGATCCAACAAAAAGTATCTTGAAGTACCGGTAACTCACAGTACCAAATCATTCCTCATCGTTGGATATATCAATGTCCATTCTACCCAATTAGATATGACGATCAGAAATAATTTGGTGTCATGAAGTACCGGACCTTGAGGTACTGTTTTTTTTTTTTTTTACCGGAGCAAATCTCAAATTAAACGGGTCGATCACAAGGTGCGGTCGTCAGCAGGCGCCACGGCGGAAGCCGACGGAGCCGCCGACGACGTCGTAGAGCACCTCGTGCGTCTGCTGCTGCACGTTCCCGATGAAGCCGAGCGCGAAGTCTCCCGGCGTCGGCACGAACGCGAGGCACCCCTCCACCATGACTCCCATCGCGTCCAGCCTCACCACCGCGCCGCCGTCGAACACCAGCGACACCGCCGGCACCGTCACGCTCGTGAACCGGACGAAGTCGTAGCAGGTGTCCAGCCCGGCCCTCCCTCC | |||||||||
gi|88345932|gb|CI632405.1|CI632405 CI632405 Oryza sativa (japonica cultivar-group) germinating seeds Oryza sativa Japonica Group TGAGGTACCGGTACATCGAGG EST sequence (targeted fragment marked with yellow): GATGATGATTTGAGGTGTTCTTGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGATATATGGACGTTAATTTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAAAGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCTGGGTGGGTTGGGCATCGTTAGATCCAACGATCGGAAATGATTTTGTACCGCGAGGTACCGATACCTCGAGATACTTTTTGTTGGACCGAAGAAAAACTCATATAGGAGATGGGTGCTCTTGTTCGTAGTTTGTTTGATTCTGTTATTTTTTTTCTCTTGTACATATAAAAGAGATTGGGATTTGTCCAAAAA | |||||||||
gi|89182339|gb|CI113708.1|CI113708 CI113708 Oryza sativa (japonica cultivar-group) Panicles two weeks after flowering Oryza sati TGAGGTACCGGTACATCGAGG EST sequence (targeted fragment marked with yellow): TAGCAAAACTGTTGAAAACTTTATTATTTACTTTGCTCGAAATACAATATCGACTAATTGGAATATTAGATCATTAATCAGAGCTTGCAACACTGAAACTCTCTATTGCTGAAGTACTCTGATTAATTAACATCCTTCTGTTGCGTCATTGACGCTCCACATTGGTTTAGATCTCAGCATCCAATGTAATTAGAGGTTTGTTATCGTCCAACAAAAAGTATCTCGAAATACCGGTACCTCACGGTACCAAATTATTTTCGATCGTTGGATCTAGCTGAGCAGATGAGTTATCGGTACCGTGAGGTATCGGTATCTCGAGATAATTTTTGTTGGACCGAAGCAAATCTAAT | |||||||||
gi|58691619|gb|CK080306.1|CK080306 83377rsicen_7314.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indic TGAGGTACCGGTACATCGAGG EST sequence (targeted fragment marked with yellow): GCTGCAGGTGATGGTCTGGTAGCTGCTCGTCATCTTCATCACTTTGGGTACAAGCCTTCTGTATGTTATCCAAAACGCACGCCCAAGCCTCTGTATTCTGGCCTTTGTACTCAGCTTGAATCACTAACAATCCCTTTCGTTCCTGTTGAAGACCTACCTGCAAATTTATCGGAGGAGTTTGACATCATTATTGATGCAATGTTTGGTTTTTCGTTTCATGGAACACCAAGACCACCATTTGATGATCTTATCAACAGGCTTGTTTCACTGAGTGCTATTGATAATTCTGCTAAAAGACCAGCAATTGTTTCTGTTGATATCCCTTCGGGGTGGCACGTTGAAGAGGGAGATATCAATGGAGGAGGGTTTAAACCTGATATGCTGGTATCATTGACTGCACCAAAGCTCTGTGCAAAAAAATTTACCGGTCCACACCATTTTCTTGGGGGTAGATTTGTTCCCCCACCTATTGTGAGCAAATATAAGCTTCATCTTCCTCCATATCCCGGTACCTCAATGTGTGTGAGAATTGGAAAAGCTCCATCTGTTGACATTTCATCTCTAAGAGAAAATT | |||||||||