| mature miRNA: TGAGTGTGATGATTTGAAATA species: Vigna unguiculata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|190551269|gb|FG935810.1|FG935810 UCRVU09_CCNT13892_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vig TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAGATCATCACACCCGACACCTCATTATTACTCGCCCTCAAACTTGGTTGAAGGAATCATATCTGTTTCTCAGACTGAAGCCATGAAATTGTATTTCACTAAACAGTATAAAATGGTGAAAAAGCTGCCCATGCACAGACTATTTTGGTTCAAATACTTTTCTGCTTATTCTGAAATGGCTAATAACAGTCCAAATTGTTGCCACAAACATCCAACAAAATACAACTAACTCCCAATATTCGCTTTTGTCAAAGAACTTTCAGAATGTTACTGTTTTTGTGCATCCTCTCGTGTAACAGCTCTAACATATATTTCGTAACAGCATCCTGCAACAACAACAACCGTGAGAACATCCCCAATTCTTTTGAGCTGTTTTACACTCTTCTTATACGATTTGAATGGTTTCAGAATTGAATCTTCAGCTAAGAGAGCTTTTTCACGAGGACCAGGCTCAACGTGGAATCGACGGCGCGGAAAAGAAGCGGATTCTTCAGTCTTCTTGGACTGAGTTACAAAATGGGAAGCAACGGTTGTTTTCTTCAACAAGAACGCCATTTTCTCGAAGCGCTTTGAGGTGAAACGACGTCGGTCAAGTTCAGAACTCTGAGAA | |||||||||
gi|190464494|gb|FG861226.1|FG861226 UCRVU05_CCNN5902_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 V TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): ATTACCTCAAACTTATTTCTGATCCCCTTTAAATTTTTCCCGAAAGGAACAAAAAAAAGGATTGAGGGGTGAAGATTTGAAGGTTTATTTCAAATCATCACACTCAAA | |||||||||
gi|190541618|gb|FG921544.1|FG921544 UCRVU09_CCNT4777_g3 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vign TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTATTAAACATCATCACACTTAAGAGTGTTCAAAACATGAGTATGCAGTTAATCTGTTCAATTTTCCAACCAACTTTTGGCCAGTAGTGTCAACAATATCGTGATTGGCCTTTTAGCTGTACAGCGTTGATATTAAAAGTACGGAAACTAAATTCAAGCTAAATTTGAAGAAACAAAAAAGAAAAATATTCCATGCTTCAAAATTCCTTTGCTCTTTGCCTCAATTGATCAAGTTCCAACTCAATCTCTGAGTCTCGAAATGGAATTCCAGTGTTGGTGCTAGTGGTGCCACTTCTTCCAGGAGGAAGGTCACCTTTCTTTGAACCACCAGACAATTCTTTCTTCAAATTTGCGAGATCGTCATCAACTGAAGAGCCCTCAAGCAATGCAAACTTTCCTTCTAGATCGTCACTTGTCAACTGGCCAAGAGCTTCAGCTTGGGACTCCATTGCCATCACTTTCTCTTCCATCTTTTCAAAGGCTGAAAGAGCACTACTAGTATTGACATTTCCCAGCATCTCACTCACCTTGGTTGCAGTCTTTGCTGATTGAGCTCTTGCTTTCAGGGTATCCTTCTTTGACCTTG | |||||||||
gi|190537861|gb|FG921676.1|FG921676 UCRVU09_CCNT4855_g3 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vign TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTATTAAACATCATCACACTTAAAAGTGTTCAAAACATGAGTATGCAGTTAATCTGTTCAATTTTCCAACCAACTTTTGGCCAGTAGTGTCAACAATATCGTGATTGGCCTTTTAGCTGTACAGCGTTGATATTAAAAGTACGGAAACTAAATTCAAGCTAAATTTGAAGAAACAAAAAAGAAAAATATTCCATGCTTCAAAATTCCTTTGCTCTTTGCCTCAATTGATCAAGTTCCAACTCAATCTCTGAGTCTCGAAATGGAATTCCAGTGTTGGTGCTAGTGGTGCCACTTCTTCCAGGAGGAAGGTCACCTTTCTTTGAACCACCAGACAATTCTTTCTTCAAATTTGCGAGATCGTCATCAACTGAAGAGCCCTCAAGCAATGCAAACTTTCCTTCTAGATCGTCACTTGTCAACTGGCCAAGAGCTTCAGCTTGGGACTCCATTGCCATCACTTTCTCTTCCATCTTTTCAAAGGCTGAAAGAGCACTACTAGTATTGACATTTCCCAGCATCTCACTCACCTTGGTTGCAGTCTTTGCTGATTGAGCTCTTGCTTTCAGGGTATCCTTCTTTGACCTTGCCTCCTGTATCTTACTCT | |||||||||
gi|190488584|gb|FG880527.1|FG880527 UCRVU07_CCNP13657_b1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vig TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): GTGGTCTTCGCAAGCGGTGTTAGGTCAGGGCTTGCACAGTTACGCTGCGTTTCACTACGAACCTTTACATTTTCAATTGGAGATTATGGATGAGAAAGCAGGAGATAGCAGCACAGTGAAGAAAATAAATTCAGGTTGTGATGTTGATGCTTTAAAAAAGTGTTTGGAAGAGAACAAGGGAGATTATGTCAAATGTCAGAAACAGATTGAGGCTTTCAAATCATCATGCTCACTCAAAAAACCAAACCAATCTCTTGATTCTGCTTCACGTTAGGTCAAATTCGATGGTTCTGATTCTGCAGTTTATTTCTGGGTTTTCCGTCTTATGGTAAAGGGATGATTATTATGAACTGAAGTTTCTGTCTTTCTAGATGATATTTCTCAGTTGTATCAATATTTATTCATAATAATGATAATTGTGATACTATCTTTTTATAAAAAAAAAAAAAAAAA | |||||||||
gi|182397860|gb|FF395254.1|FF395254 MOOEB86TR MOO Vigna unguiculata cDNA 3', mRNA sequence TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): AATTTTATTTCTCAACAACCACAACATGTATTTTACAACATCACACACAAATCCTTACAACACATAACTCTCGACTTTCAGCAAAGTAACCAATTATAAGCTTAACCAGAAATTTCAATGGCCTTCACTTCTGCCTTCTTAACCTCTTCCTTTGGAACAGTGACAGTGAGAACACCATTCTCCATAGAAGCCTTCACTTTATCCACTTTCGCATTCTCAGGCAATCTGAACCTCCTCAAGAACTTTCCACTGCTACGCTCCACACGATGCCACCTGTCGTTCTTATCTTCCTTCTCAACATTCCTCTCTCCGCTAATCTGAAGAACATTATCATCTTCGATCTCCACCTTCACCTCCTCCTTCTTCAGTCCTGGAATGTCAGCCCTGAACACGTGTGCCTCTGGGGTCTCCTTCCAGTCCACACGAGTGCTCACAAATGCAGAATTTTCTCGACCAGATTCAGGGAAAGAAAAATCCTTGAAGGGATCCCACACATCCAGAGAAAATGGATCGTAGACGTTGCTCCTTCGCCCACCGAACAAACTTGGAATTAGCGACATGCTTATGACTATAATACTTGACAGAGATTTGAAACTTCGCAGATTGTAGAGCGATCGTAATCAGGTAACTCTATTCTTATTTGATGATGCGGGTGAATGTATTTAAAAGAAGTGAAAGGATAATGTAGTATCC | |||||||||
gi|190466910|gb|FG866041.1|FG866041 UCRVU07_CCNP3703_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vign TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTATTAAACATCATCACACTTAAGAGTGTTCAAAACATGAGTATGCAGTTAATCTGTTCAATTTTCCAACCAACTTTTGGCCAGTAGTGTCAACAATATCGTGATTGGCCTTTTAGCTGTACAGCGTTGATATTAAAAGTACGGAAACTAAATTCAAGCTAAATTTGAAGAAACAAAAAAGAAAAATATTCCATGCTTCAAAATTCCTTTGCTCTTTGCCTCAATTGATCAAGTTCCAACTCAATCTCTGAGTCTCGAAATGGAATTCCAGTGTTGGTGCTAGTGGTGCCACTTCTTCCAGGAGGAAGGTCACCTTTCTTTGAACCACCAGACAATTCTTTCTTCAAATTTGCGAGATCGTCATCAACTGAAGAGCCCTCAAGCAATGCAAACTTTCCTTCTAGATCGTCACTTGTCAACTGGCCAAGAGCTTCAGCTTGGGACTCCATTGCCATCACTTTCTCTTCCATCTTTTCAAAGGCTGAAAGAGCACTACTAGTATTGACATTTCCCAGCATCTCACTCACCTT | |||||||||
gi|190429831|gb|FG824345.1|FG824345 UCRVU04_CCNI8207_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna u TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTCTTCTTTTTTTTAACAACCACAACATGTATTTTACAACATCACACACAAATCCTTACAACACATAACTCTCGACTTTCAGCAAAGTAACCAATTATAAGCTTAACCAGAAATTTCAATGGCCTTCACTTCTGCCTTCTTAACCTCTTCCTTTGGAACAGTGACAGTGAGAACACCATTCTCCATAGAAGCCTTCACTTTATCCACTTTTGCATTCTCAGGCAATCTGAACCTCCTCAAGAACTTCCCACTGCTACGCTCCACGCGATGCCATCTGTCGTTCTTATCTTCCTTCTCAACATTCCTCTCTCCGCTAATCTGAAGAACATTATCATCTTCGATCTCCACCTTCACCTCCTCCTTCTTCAGTCCTGGAATGTCAGCCCTGAACACGTGTGCCTCTGGGGTCTCCTTCCAGTCCACACGAGTGCTCACAAATGCAGAATTTTCTCGACCAGATTCAGGGAAAGAAAAATCCTTGAAGGGATCCCACACATCCAGCCCACGCGTCCG | |||||||||
gi|190414684|gb|FG811786.1|FG811786 UCRVU04_CCNI12289_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTCTAAGCATGACACATTAAATTTACGATTTTAAGTATTATATACACAGGACCCTCCATGATAGAGGAAATCAAGCATTGCCCCTGGCCCTGGGAACAGCCATAATGAAAATCATCACATTCACAGAACAAACTAAACATAGTCTGAAACTAGAACTGCATGTCTAACAACACATAGCTGACGAGCCAAAGCACCATAGCCTGTTCATTCATCTTCGAACATAACCAAAACAGGTCGCACTTCATTCTCGACAGTGCTTTCATGATGCCCTTTGACTTGGCTGCTAGGGAAGTTACTCCAGCAGCAGTCACAGAAGAGCTAAGCAACCAACATAATACTACGATAGTCCTTTGCATGTATCTCCTGAGTAAAGAAAGCTCATTACTCATCTTCGTCATTGTGATTGAAATTTGAAACCGGGAAAGCACCTAGTAAGAGGTCCATTTGGGGCAACAGAATATCATTCTGTTTAAATATGCCACAACCCTCTCAGCTTAATTCTTCTTTATTTCTCCAATTCTATTTCTAGGAACTGAAC | |||||||||
gi|190549947|gb|FG931420.1|FG931420 UCRVU09_CCNT11307_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vig TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAAGTGTAGAGCTCTTGTGCAAACATGTATTAAACATCATCACACTTAAGAGTGTTCAAAACATGAGTATGCAGTTAATCTGTTCAATTTTCCAACCAACTTTTGGCCAGTAGTGTCAACAATATCGTGATTGGCCTTTTAGCTGTACAGCGTTGATATTAAAAGTACGGAAACTAAATTCAAGCTAAATTTGAAGAAACAAAAAAGAAAAATATTCCATGCTTCAAAATTCCTTTGCTCTTTGCCTCAATTGATCAAGTTCCAACTCAATCTCTGAGTCTCGAAATGGAATTCCA | |||||||||
gi|190532427|gb|FG920753.1|FG920753 UCRVU09_CCNT4296_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vign TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTATTAAACATCATCACACTTAAGAGTGTTCAAAACATGAGTATGCAGTTAATCTGTTCAATTTTCCAACCAACTTTTGGCCAGTAGTGTCAACAATATCGTGATTGGCCTTTTAGCTGTACAGCGTTGATATTAAAAGTACGGAAACTAAATTCAAGCTAAATTTGAAGAAACAAAAAAGAAAAATATTCCATGCTTCAAAATTCCTTTGCTCTTTGCCTCAATTGATCAAGTTCCAACTCAATCTCTGAGTCTCGAAATGGAATTCCAGTGTTGGTGCTAGTGGTGCCACTTCTTCCAGGAGGAAGGTCACCTTTCTTTGAACCACCAGACAATTCTTTCTTCAAATTTGCGAGATCGTCATCAACTGAAGAGCCCTCAAGCAATGCAAACTTTCCTTCTAGATCGTCACTTGTCAACTGGCCAAGAGCTTCAGCTTGGGACTCCATTGCCATCACTTTCTCTTCCATCTTTTCAAAGGCTGAAAGAGCACTACTAGTATTGACATTTCCCAGCATCTCACTCACCTTGGTTGCAGTCTTTGCTGATTGAGCTCTTGCTTTCAGGGTATCCTTCTTTGACCTTGCCTCCTGTATCTTACTCTCCAAAAGCCGTGTATT | |||||||||
gi|190530195|gb|FG921061.1|FG921061 UCRVU09_CCNT4489_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vign TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTATTAAACATCATCACACTTAAGAGTGTTCAAAACATGAGTATGCAGTTAATCTGTTCAATTTTCCAACCAACTTTTGGCCAGTAGTGTCAACAATATCGTGATTGGCCTTTTAGCTGTACAGCGTTGATATTAAAAGTACGGAAACTAAATTCAAGCTAAATTTGAAGAAACAAAAAAGAAAAATATTCCATGCTTCAAAATTCCTTTGCTCTTTGCCTCAATTGATCAAGTTCCAACTCAATCTCTGAGTCTCGAAATGGAATTCCAGTGTTGGTGCTAGTGGTGCCACTTCTTCCAGGAGGAAGGTCACCTTTCTTTGAACCACCAGACAATTCTTTCTTCAAATTTGCGAGATCGTCATCAACTGAAGAGCCCTCAAGCAATGCAAACTTTCCTTCTAGATCGTCACTTGTCAACTGGCCAAGAGCTTCAGCTTGGGACTCCATTGCCATCACTTTCTCTTCCATCTTTTCAAAGGCTGAAAGAGCACTACTAGTATTGACATTTCCCAGCATCTCACTCACCTTGGTTGCAGTCTTTGCTGATTGAGCTCTTGCTTTCAGGGTATCCTTCTTTGACCTTGCCTCCTGTATCTTACTCTCCAAAAG | |||||||||
gi|190473284|gb|FG870241.1|FG870241 UCRVU07_CCNP6587_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vign TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTGAAAGCATTTCAAATTTTTGTATTTGAACAAAAAAAAATAAAAAAATTTGCTACAATTACCTCAAACTTATTTCTGGGCCCCTTTAAATTTTTCCCGAAAGGAACAAAAAAAAGGATTGAGTGCTGAAAATTTGAAGGTTTATTTCAAATCATCACACTCAAAGGATGCTTCAAATTCCCCACATGAAGCAAATGCTGTCCTAAGGGAACTTTTCTGTTGCCAAGTTCGGGGGGGGATACTCAAATCTTTACAAACAGGGAGGTTGAACCTAACCAGTGTTTCTGATTTTCCCATCAATTGAACTTTCTCAAAACCAAGCAAGTGTTTCTGAGGTGCATTGTGCACTGCAGGGGGAGTAAAAAACAAAAACACTGGATGACCACTGTTCAAATTCCCCCGGACGCGGGG | |||||||||
gi|190451700|gb|FG844542.1|FG844542 UCRVU05_CCNN6411_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 V TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTGAAAAAATAAATGTTCACGGGTCTACTCTCTCTTAACAAACAGAACTATGTTAAAACAATTCAAATCATCACACTAATAAACTAATGTTCCTATGAATGACAACGAGCTATTGCATGAAAGAAATTCAAAACTGTCACTACCCTCACCTCTATTTATTTATTTAATATACAAATCAATTTACATCCCCGTGCTGGACCCGAAAACCACACATTGTCTTGATTAAATTATGGCCATTCATTGATGGATCAATCACAAACAAGAACTTACGCTTGTTAAGAATTTCAGCTAGAACACTGAACAAAGCCTTCCTGCCTGAATACTTACAGAGTATTGTTTGTCTTCGGATCTTTCAGCCCACTTTGGATTACTCTGCAGAATTCTACATTAATTCACCCGCAAACGCCTCATTTCAGCTTGGAAAGTGGGGCTGGAGAGTAGAGTTCGATGTGCAAGAGTCTTTATGTCTTCTCTTGAACAGTCACGGGAGATACGAACCAGTTCCCACAATGCACCCCCACTAATCATGTCTCTCGCATTTATTTCATGTTGTGCTAAGTGACAGAGTGCAAGCTCAAT | |||||||||
gi|190499100|gb|FG889375.1|FG889375 UCRVU08_CCNS1068_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTGTAAGTGTAGAGCTCTTGTGCAAACATGTATTAAACATCATCACACTTAAGAGTGTTCAAAACATGAGTATGCAGTTAATCTGTTCAATTTTCCAACCAACTTTTGGCCAGTAGTGTCAACAATATCGTGATTGGCCTTTTAGCTGTACAGCGTTGATATTAAAAGTACGGAAACTAAATTCAAGCTAAATTTGAAGAAACAAAAAAGAAAAATATTCCATGCTTCAAAATTCCTTTGCTCTTTGCCTCAATTGATCAAGTTCCAACTCAATCTCTGAGTCTCGAAATGGAATTCCAGTGTTGGTGCTAGTGGTGCCACTTCTTCCAGGAGGAAGGTCACCTTTCTTTGAACCACCAGACAATTCTTTCTTCAAATTTGCGAGATCGTCATCAACTGAAGAGCCCTCAAGCAATGCAAACTTTCCTTCTAGATCGTCACTTGTCAACTGGCCAAGAGCTTCAGCTTGGGACTCCATTGCCATCACTTTCTCTTCCATCTTTTCAAAGGCTGAAAGAGCACTACTAGTATTGACATTTCCCAGCATC | |||||||||
gi|190460762|gb|FG858702.1|FG858702 UCRVU05_CCNN21976_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 TGAGTGTGATGATTTGAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAAGAGAATTTGCTACAATTACCTCAAACTTATTTCTGATCCCCTTTAAATTTTTCCCGAAAGGAACAAAAGAAAGGATTGAGTGCTGAAGATTTGAAGGTTTATTTCAAATCATCACACTCAAAGGATGCTTCAAATTCCCCACATGAAGCAGATGCTGTCCTAAGGCAACTTTTCTGTTGCCAAGTTCATCAACTATACTCAAATCTTTACAAACATCTACTTTGAACCTAACCAGTGTTTCTGATTTTCCCATCAATTGAACTTTCTCAAAACCAAGCAAGTGTTTCTGAGGTGCATTGTGCACTGCAGGGGGAGTAGAGAACAAAAACACTGTATGACCACTGTTCAGATTCCCCTTGTTCTTCACCCTGAGGTTGATATCAATGAACAAGTTCTCACAAAGTTCACCATCAGCATCAAGTGACTTGCATTCTGAGAAACGGCACACATGATCCTCAGCTAGGGGAACAGACACCATCTGAGGGGCTTTAATTAACTTATGCACAATACTTGAGTAGCTTAAACCATCCCCAAATGAGAAAACAGTTTCCCCTTTATAGAATCTGTATGTTCTA | |||||||||