| mature miRNA: TGATAGTGTCAACTAGTACAG species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|57495756|gb|CX527037.1|CX527037 s13dNF39C09AT070_514586 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence TGATAGTGTCAACTAGTACAG EST sequence (targeted fragment marked with yellow): GGCACGAGGGTTACATACATTGCATTGCACACTTCTTCCTCCATTTTCAGTTTGTTATTATGGATCTCTGTTCATTAGCATGTCCTTCTTTTGTCACACCTTGTGATCCCAGAAGAACACTTCCTCTTCCTTCTTCTTCTTCTTCTCACTCTCAATGGGGTCTTCATTTCTTCTCTCACTCTCAACAACACAACAAACTCAAGAAAAAGTTTGGTGTTGTTCATGCTTCACTTTCTGAGATGGGAGAATATTATTCTCAAAGACCTCCTACTCCACTACTTGACACTATTAACTACCCAATCCACATGAAAAATCTCTCCACCAAGGAGCTGAAACAGCTTGCGGATGAACTACGTTCTGATGTTATTTTCAGTGTTTCAAGAACTGGGGGACATTTAGGTTCAAGTTTAGGTGTTGTTGAACTAACTATTGCTCTTCACTATGTTTTTAATACACCTCAGGATAAGATTTTGTGGGATGTTGGTCACCAGTCATACCCTCATAAAATACTTACTGGTAGAAGGGATAAGATGCATACCATGAGACAGACTAATGGATTGTCTGGATTTACAAAACGTTCTGAGAGTGAATATGATTCTTTTGGCACTGGTCATAGTTCAACTACTATTTCAGCT | |||||||||
gi|157982243|gb|EX530515.1|EX530515 MTGland_A068_2007-06-27/MTGlandA068_A07_032_1 Medicago truncatula A17 glandular trichome Med TGATAGTGTCAACTAGTACAG EST sequence (targeted fragment marked with yellow): ACGGCCGGGCTCTCNGCAACACATTTAGTGATGAAACAAGGTTGGATTGTTTTGACTTCAATATTGATAAGACTATTATGGAGATGAAAACAATTGATCATAGTGACAAAATCAATGAAACCTTTACCCAAAAACGCTCTTCATCTTTTCAAGTTCAAATTCCATCTTTTGACAGCCCCCCAAATTCACCTACTACTAGTTCCCAACAATACCCTACCTTAAATTCAATACGAAATGAGAGAGTTTCAGTGTCTCCAACCGAATTGGAAAATAAGAATCATTCAACAAAAACCTCAAAAACCTCAAAAACCAAAAGGTCTCGTGCTAATAATGGTGAGGATCATATCATGGCAGAGAGAAAGCGAAGAGAGAAACTCACCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCCAACCTTAAAAAGGTACAATGTTATAAAATGATTATATGCAGTTCAAAGTTAAGGGTATTTTGGTGAAAAATTATTTAATCCATGTTTGAAAATTGTTTTAAAGAAGTATTATAAAAATGACAAAAAACGCATAAGAGTCTTATATTTAGAGACGAAGATATTATAATCTTGATTACTCTATTCATGTTACACTACTCACTAATCGATTGTGTAAAAATCTGTTAGATGGACAAATTTTCTGTATTAGTTGACACTATCAAATACATGAAAGAGCTTAAAGAGCGTTTGGAAGTTTTAGAAGAACAAAACAAGAGAATAAAAACAGAATCACATGTGATTCTGACCAAACCAGACCTTTGCAGCGAAGATGANTCCTCATCATTTGATGAGCACAATGAAAGTGTTGTTGGTTCAATATTTCAAGTGGAAGCAAAAGTGTTAGGGAAATATATGTTGATTCGGNTCCAATGTAAAGAATANNNNGGGCTTTTAGTGAAAATTATGGTCGAGATCCAAAGANTTCAACTATGTATTGTCNACAGTAGTGTTTTACCCTTTGGANATTCTATCTTCNATANTACTATCATNGCTCNNNAGTGNTCGTCTCTCTACGTCNCNATCTNCNTNNANTNNANNAANACTTTTT | |||||||||
gi|148764516|gb|ES611210.1|ES611210 MTGland_A005_2007-02-17/MTGlandA005_A01_008_1 Medicago truncatula A17 glandular trichome Med TGATAGTGTCAACTAGTACAG EST sequence (targeted fragment marked with yellow): ACGGCCGGGCTACTCTCAAACTGTTTCAACCATTCTTCAAAACCAATCAACACAATGGACTATCGATTCTTCACCTTCCATCAACTACATCACTTCCTCTAACCAATCCTCTTTCACCAACTGGACCAACCACCATAACTTCCACCCTCTACCACCACCGGAAACCACCACCACCACCTCCCAATGCCTCCTCAAATACATCCTCTTCACAGTCCCATACCTCCACACCAAAAACCATGACGAAACCTCCCCTCAAACTCATGATGCAGGCGTTGACCCCTCCTCCAAGTTACGTGGCAAGGGAACACCGCAAAACGAGCTGAGCGCCAACCATGTCCTCGCGGAGCGACNAARAAGAGAGAAACTCAATGAAAGGTTCATTATTTTAAGATCATTGGTTCCATTCGTGACAAAAATGGACAAGGCTTCTATATTAGGTGACACTATTGAGTACTTGAAACAGCTAANAAGAAAGATACAAGATCTTGAAACACGTAACCGTCAGATAGAGACTGAACAACAAAGTAGGAGTGGTGTAACGGTTTTGGTGGGTCCAACAGATAAGAAAAAGGNGAGGATTGNGGAAGAGTGTGGAGCCNCGAGAGCGAAAGCAGTTGAGACGGANGTTGTTTCGTCGGTTCANGTTTCGATTATTGAGAGTGATGCTTTGTTGNGGATTGAGTGTTTGCATAGAGAANGATNGTTGCTTGACGTTATGGTAATGTTGAGGGAGTTGANGATTNAGGTTATTGGAGTTCNATCTTCGCTNAANAANGGGNGTTTTTGTTGCGNNNTTNNNGG | |||||||||