| mature miRNA: TGATCACGAGGTTCGCATCA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52388048|gb|CV232473.1|CV232473 WS0197.B21_L05 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0197_L05 3', mRNA sequence TGATCACGAGGTTCGCATCA EST sequence (targeted fragment marked with yellow): GATTTATTTATACAGTAAAATTACACGTATGATCACGTTACATCAACAACAAAAAGATGCTCTTAACAAATTCATCAAATACTGTCACAATGGATGAAAAAAATTGATTTTTCAGCTAAATCACAATGTTCAAAAGAATCCTTCTTGAGAATTGATTTCACAGGTTGAACAATATCTTCTTCTAGGTCGATTGAAGGCAGTTTTTCAGTTGATTTCCAGCTCCTTTTCATTTTCTTCCTCGTACCTATCTCTTCTACCCTGTCATTTATGCTAACCATTTTCTTGATCTTGGCTGGTTTTGCTTGAGCTACAAGTGAACAAGGCAATGGTGCCTCCTCTTGCTCACGATCATTGCTAGAAGAACAAGATGAGGCAAAGGCGTCCCAGTTCTTCAAACTATCTTCTTGTTTTACATCTTCACATCCTGGTTCTTCCCCTTGATCAGTAGTCCTGGGGTGCACCTCGTGATCACCCTCGTGGATAGCCCCATTCTGTGTTTTGGCTAAGTTTTGGTGCACAGGATGGCCTAGTTTCACAGTCTTGAAGGCTTGTGCCGAGACAATTTTCGTGACAAGGTTGTAGAGCCTGTTGCAAATGTCAAGAGAATGGATTTGGTGCCCTTTGTGATCCATTC | |||||||||
gi|52380835|gb|CV228903.1|CV228903 WS01911.B21_J12 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01911_J12 3', mRNA sequence TGATCACGAGGTTCGCA-TCA EST sequence (targeted fragment marked with yellow): ATTTTTCCCTGGCTATTACAAGGCCACGTGATGGAAACCCCCCGTGGCACGTGGGGCTCGATGCCTGCGCTAATCGCATACTGCCATGTGGTGATATCCATCTGGCAATCCACTTGAATTGACTGCTGACCTCGTGATCATCGGCGAACATGACAGGAGCAGCAAGCAGCAGGGGTCGGTCTTGAAGAAGTGACTGAGAGGCATGCGCACCCATTTTAATGGAAAGTTTCCATGTACAGCTCCGTAAACACGACGATGACTTTGAAGAGATGATAGGATCTAATCCATAATCCGGCATGGGAGGCGGATCAACTCTTCACGGAGAAAGGTAAGACTGACGTGATTTTGCTCAACAGATGGAGATTTTGGAGTGCCTACAAAATTGCTGGAAAGAAACCCATTTTTTTCATTCAAGGTTGGTATGGCGAGATCGAATGACCTCAGGGCTCTGTCCTAAAGCCTCACCTAACTTGTAAACAACCATCTCAAAGAACACAAACAAGGCCCCCTCAAAAACACTTCCCATAGGCATTAAAGGCCTAGATTTCTCCTCCCCGCCATCGCCATCACCCTTATCATCAGCCATGGTCTGTGCTGGCACATAGCAAACCACACTAGCATGCTTCACACAGGATCCTGTCTCAGGCTGAGCCGTCAACAACAACACTGTAG | |||||||||