| mature miRNA: TGATGATCTTGGAACACGTGC species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270456012|gb|GT838538.1|GT838538 CCYP1298.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TGATGATCTTGGAACACGTGC EST sequence (targeted fragment marked with yellow): GTCCCGGCCAAAGGGAAGCAAGATGTATACCGCCAGGAAGAAGATCCAGAAGGACAAGGGTGTCGAGCCCTCCGAGTTTGAGGATTCCGTCGCACAGGCTTTCTTCGATCTGGAGAACAACAACCAGGACCTCAAGAGTGAACTCAAGGACCTCTACATCAATACTGCTATCCAGATGGATGTTGTCGGCAACAGGAAGGCCGTGGTGATCCATGTGCCGTACCGCCTGCGCAAGGCCTTCAGGAAGAGCCATGTCAAGCTCGTCAGGGAGCTGGAGAAGAAGTTCAGCGGCAAGGATGTAGTTTTTATTGCAACAAGGAGGATTGTAAGGCCACCCAAGAAGGGTTCAGCTGTTCAGCGCCCTCGCACCAGAACTCTCACTGCTGTTCATGATGGTATCTTGGAGGATGTTGTATACCCAGCTGAGATCGTTGGGAAGCGTGTCAGATACCGTTTGGATGGGTTCCAAGATCATCAAGATCTTCCTGGACCCCAAGGAGCGCAACAACACTGAATACAAGCTGGAGACTTTCACCGCAGTCTACCGCAGGCTTTGTGGCAAGGAAGTCGTCTTTGAGTACCCTGTGACCGAAACTGCTTGAAGATGCATGCTTTGGATATCTCCATTTTCATTCCGTTCGTATCCAGACGTTTTGGTTGGG | |||||||||
gi|270413469|gb|GT795608.1|GT795608 CCXG761.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG761 TGATGATCTTGGAACACGTGC EST sequence (targeted fragment marked with yellow): GGGTGTCGAGCCCTCCGAGTTTGAGGATTCCGTCGCACAGGCTTTCTTCGATCTGGAGAACAACAACCAGGACCTCAAGAGTGAACTCAAGGACCTCTACATCAATACTGCTATCCAGATGGATGTTGTCGGCAACAGGAAGGCCGTGGTGATCCATGTGCCGTACCGCCTGCGCAAGGCCTTCAGGAAGAGCCATGTCAAGCTCGTCAGGGAGCTGGAGAAGAAGTTCAGCGGCAAGGATGTAGTTTTTATTGCAACAAGGAGGATTGTGAGGCCACCCAAGAAGGGTTCAGCTGTTCAGCGCCCTCGCACCAGAACTCTCACTGCTGTTCATGATGGTATCTTGGAGGATGTTGTATACCCAGCTGAGATCGTTGGGAAGCGTGTCAGATACCGTTTGGATGGTTCCAAGATCATCAAGATCTTCCTGGGCCCCAAGGAGCGCAACAACACTGAATACAAGCTGGAGACTTTCACCGCAGTCTACCGCAGGCTTTGTGGCAAGGAAGTCGTCTTTGAGTACCCTGTGACCGAAACTGCTTGAAGATGCATGCTTTGGATATCTCCATTTTCATTCCGTTCGTATCCAGACGTTTTGGTTGAGGTCTCAATTAGTTCTCCCCATGTATTCCAGAAACCATAGTTTTGGTGACAACTTGGCGTTTAGGTGTTTGCAACCTGGAGATGGCAATGGACGTGAACAATGTTAAGTTTTGAGCATTTAAATTATTCTCTTGCTCGGTT | |||||||||
gi|270482745|gb|GT863949.1|GT863949 CCYP15826.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TGATGATCTTGGAACACGTGC EST sequence (targeted fragment marked with yellow): ACCAGGACCTCGAGAAGTGAACTCAAGGACCTCTACATCAATACTGCTATCCAGATGGATGTGTCGGCAACAGGAAGGCCGTGGTGATCCATGTGCCGTACCGCCTGCGCAAGGCCTTCAGGAAGAGCCATGTCAAGCTCGTCAGGGAGCTGGAGAAGAAGTCCAGCGGCAAGGATGTAGTTTTTATTGCAACAAGGAGGATTGTGAGGCCACCCAAGAAGGGTTCAGCTGTTCAGCGCCCTCGCACCAGAACTCTCACTGCTGTTCATGATGGTATCTTGGAGGATGTTGTATACCCAGCTGAGATCGTTGGGAAGCGTGTCAGATACCGTTTGGATGGTTCCAAGATCATCAAGATCTTCCTGGACCCCAAGGAGCGCAACAACACTGAATACAAGCTGGAGACTTTCACCGCAGTCTACCGCAGGCTTTGTGGCAAGGAAGTCGTCTTTGAGTACCCTGTGACCGAAACTGCTTGAAGATGCATGCTTTGGATATCTCCATTTTCATTCCGTTCGTATCCAGACGTTTTGGTTGAGGTCTCAATTAGTTCTCCCCATGTATTCCAGAAACCATAGTTTTGGTGACAACTTGGCGTTTAGGTGTTTGCAACCTGGAGATGGCAATGGACGTGAACAATGTTAAGTTTTGAGCATTTAAATTATTCTCTTGCTCGG | |||||||||
gi|270483062|gb|GT864266.1|GT864266 CCYP16018.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TGATGATCTTGGAACACGTGC EST sequence (targeted fragment marked with yellow): GCGGCAAGGATGTAGTTTTTATTGCAACAAGGAGGATTGTGAGGCCACCCAAGAAGAGTTCAGCTGTTCAGCGCCCTCGCACCAGAACTCTCAATGCTGTTCATGATGGTATCTTGGAGGATGTTGTATACCCAGCTGAGATCGTTGGGAAGCGTGTCAGATCCCGTTTGGATGGTTCCAAGATCATCAAGATCTTCCTGGACCCCAAGGAGCGCAACAACACTGAATACAAGCTGGAGACTTTCACCGCAGTCTACCGCAGGCTTTGTGGCAAGGAAGTCGTCTTTGAGTACCCTGTGACCGAAACTGCTTGAAGATGCATGCTTTGGATATCTCCATTTTCATTCCGTTCGTATCCAGACGTTTTGGTTGAGGTCTCAATTAGTTCTCCCCATGTATTCCAGAAACCATAGTTTTGGTGACAAATTGGCGTTTAGGTGTTTGCAACCTGGAGATGGCAATGGACGTGAACAAAGAAAAGTAAAAAGCAAAAAAAAAAAAAAAAAATG | |||||||||
gi|78004296|gb|DV472684.1|DV472684 5270_G02_N04Z_004 Brachypodium distachyon callus EST library Brachypodium distachyon cDNA clo TGATGATCTTGGAACACGTGC EST sequence (targeted fragment marked with yellow): CCACTCGTCCGCCTTTCTCCCTCGTCTCCTCGCGTTTCAGCAGGGCCCGGCCAAAGGGAAGCAAGATGTATACCGCCAGGAAGAAGATCCAGAAGGACAAGGGTGTCGAGCCCTCCGAGTTTGAGGATTCCGTCGCACAGGCTTTCTTCGATCTGGAGAACAACAACCAGGACCTCAAGAGTGAACTCAAGGACCTCTACATCAATACTGCTATCCAGATGGATGTTGTCGGCAACAGGAAGGCCGTGGTGATCCATGTGCCGTACCGCCTGCGCAAGGCCTTCAGGAAGAGCCATGTCAAGCTCGTCAGGGAGCTGGAGAAGAAGTTCAGCGGCAAGGATGTAGTTTTTATTGCAACAAGGAGGATTGTGAGGCCACCCAAGAAGGGTTCAGCTGTTCAGCGCCCTCGCACCAGAACTCTCACTGCTGTTCATGATGGTATCTTGGAGGATGTTGTATACCCAGCTGAGATCGTTGGGAAGCGTGTCAGATACCGTTTGGATGGTTCCAAGATCATCAAGATCTTCCTGGACCC | |||||||||