| mature miRNA: TGATGGCCCTTTTGAAGGACA species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|48935189|gb|CO164648.1|CO164648 FLD1_49_H10.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_49_H10_A029 3', mRNA sequence TGATGGCCCTTTTGAAGGACA EST sequence (targeted fragment marked with yellow): TGAAGGTAACAAGTGCCAAGATTGTGCTTCAGAAGGGCCGTCCTGACAGCCAAGTACGTCAAATGCGAATCGCTGAATGTTTAATTGGCGACGATACAGGCATCGTTATTTTCACGGCCAGAAACGATCAAGTGGATCTTATGAAGGAAGGGTCTACAGTCATCTTGCGCAATGCTAAGATCGACATGTTTAAAGGTTCAATGCGACTTGCTGTTGATAAATGGGGTAGGATTGAGGTGACTGAGCCCGCGGAATTCTCCGTGAAGGAGGAGAATAATCTCTCTCTTGTGGAGTATGAGTTGGTCAATGTTCAAGAAGACTAAAACTTATAATTCTGCATAGTGAGGGGTGCAATGCATCCCCTGCATTTCTAATTAAATGTTCGCTTAGTAGGCAAATGCAAAACATGGAATGGACAGTAAGCGATAATACTGGTAATGGGTGGCAGTTTCAGCTTATTTTTGATTTGATCACAAATTCCCTTTCATAGAAAACATTGAAATATGGTGAGAATCTGGGAAGCAACATGCTTGGCCTTGCTATCTCAAGATTCTCATTAGAACACTGACTTGCTTTCAGTGAAGGTTAGTTAGGTTGGGTTGGGGGCAGCCTGTTTTCTACTGTGTTATATGGGAGATGCATCTTTTGTGTCATACTTCAAAATGCTTATGGTAATAGTTAGGTTATCCACTTTTCCTTGGGATGTCAGCTTTTAGTCTTTGCTTAGATTTCATTGTACAGAATGCTGATGTTACAGTACACTAATAGGCACAAATCAAAA | |||||||||
gi|66739792|gb|DR017422.1|DR017422 STRS1_16_E06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_16_E06_A TGATGGCCCTTTTGAAGGACA EST sequence (targeted fragment marked with yellow): CATAATCTTCAATTAACATTTACCGTAACCATGCTCCAGAAGGCATTTCTTTTTAATACAAGATAAAATGAAACCCCACTCAAACGACCCTGCATAGTTCAATCCTCCCTAAGTTTTCATGCCATCATGATAAACCCAGGTTTCACAGGAGTTCATCAATGTACATGAATCCCGGTTTCACAGGAGTTCTCGTCATTTTGAATTTGCTCTGAACGAAAGCCCGTAGAGGAAGCTGACCAAATCACATAATCGATGGACGCTGGGGTGGGTGATAAAAGTACGGAAGTGGAGGCTTTTTGTCCTTCAGAAAGGCCATCAAATCTGATCCAACTGTATCACTCTCCAACTGGACCGCTGAAAACTCAGATAACATATGCTCATGGAATCGTACTTGGTGAATAAAACACCGCTAAAATAGCGGTTTCAATCATGTCCCCAAAATGAGGGATGGAAGGTAACATTTCGCCTATCTCTGGGCAAGCAAACTCTCCCTATTGCACACTTTGAAAATTTTCCATCACTTTTTCTATCAGAAAAATTTCATCAGCTTGCTGGGAATACTGTGAAAACCGCTTAGAATGCCTGACCTCAGCTTTAATTCGCTACTAGGTTCTTTAATTCGATAATTTATAGAACCTGAGAAACTGCTCCAGGATCGTAAATTCAGCGATCTCACTGACTTCCCATGAGATTGCTACTGGTATCTATATGTTAGAGTATACTCTGATATTTTGATGTTGGATGTTTGGATGGTGTTCTTCCAATGAAAATGCATCCATTTCAAATCCCAGAAGCCTCTTGCAACCCCAATTGATGAAACTATGTCAAGCACTCCTTTATATTAAGTTTTCTGCACCAA | |||||||||
gi|74166177|gb|DT636107.1|DT636107 EST1151038 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMGO10 3' end, mRNA TGATGGCCCTTTTGAAGGACA EST sequence (targeted fragment marked with yellow): CGGCCGGGGACTCACAACCTTTGGCCTTGAAAGAAGTTGGGAGAGAGAGAAATGGATCATAAATCTATTCTTCTGCTCATCACCATGTTTGTGCTCTCTTTTGCTCATCAACATCATGTGTATGAGTATGAGCAGGCGGGTGGATTCACTGCTTTCAATGGACGCAATATCACGGGGGAACCCTCTTCCTCCATGCCCCATAAAAGGGACTTGGACGCGCTTCTGAGCTTCAAAAGGGGCATCGTATCAGATCCACATGGATGTCTCTCCAACTGGACGGCCCATAACTCACATAACGTCTGCCGCTGGAACGGAATTTCGTGCACACCAAACACGAAACGAGTGGCTGCAGTTATACTCGTTGGCTGCGGATTGAATGGTACGCTATCCCCCTCTATTGGCAACCTCTCTCTGTTGCGGACTTTAGATCTTTCCTATTCCATCAATCATTTCAGTGGAAGAATTTCCTGGAATTATTTCAGTGGAAGAATTCCACCGTCTATTGGCAACCTCTCTCTGTTGCGGACTTTAGATCTTTCCGGGAATCATTTCAGTGGAAGAATTCCACCGTTTATTGGCAACCTCTCTCTGTTGCGGACTTTAGATCTTTCCTGGAATGGTTTCAGTGGAAGAATTCCACCGTTTATAGGCAACCTCTCTCTGTTGCGGACTTTAGATCTTTCCCGGAATCATTTCAGTGGAAGAATCCCACCAGAATTCGGCCGTCTGGTCCAGTTGGAATCTCTCGGGTTGAAAGGTATAGATCTGAATGCAAGCATCCCAACTTTTCTGGGCAACTGCACTTCACTTACAGAACTGGATA | |||||||||
gi|49448390|gb|CO367073.1|CO367073 RTK1_32_A12.b1_A029 Roots minus potassium Pinus taeda cDNA clone RTK1_32_A12_A029 3', mRNA se TGATGGCCCTTTTGAAGGACA EST sequence (targeted fragment marked with yellow): CATAATCTTCAATTAACATTTACCGTAACCATGCTCCAGAAGGCATTTCTTTTTAATACAAGATAAAATGAAACCCCACTCAAACGACCCTGCATAGTTCAATCCTCCCTAAGTTTTCATGCCATCATGATAAACCCAGGTTTCACAGGAGTTCATCAATGTACATGAATCCCGGTTTCACAGGAGTTCTCTTCATTTTGAATTTGCTCTGAACGAAAGCCCGTAGAGGAAGCTGACCAAATCACATAATCGATGGACGCTGGGGTGGGTGATAAAAGTACGGAAGTGGAGACTTTTTGTCCTTCTGAAAGGCCATCAAATCTGATCCAACTGTATCACTCTCCAACTGGACCGCTGAAAACTCAGATAACATATGCTCATGGAATCGTACTTGGTGAATAAAACACCGCTAAAATAGCGGTTTCAATCATGTTCCCAAAATGAGGGATGGAAGGTAACATTTCGCCATCTCTGGGCAAGCAAACTCCCCCTATTGCAGACTTTGAAAATTTTCCATCACTTTTCCTATCAGAAAAATTTCATCAGCTTGCTGGGAATACTGTGAAAACCGCTTAGAATACCTGACCTCAGCTTTAATTCGCTACTGGGTTCTTTTCCAAAAGCAATGTCTAATCTACAAACTCATATGGATAATTTATAGAGCCTGAGAAACTGTTCCAGGATCGTAAATTCAGCGATCTCACTGACTTCCCATGAGATTGCTACTGGTATCTATATGTTAGAGTATACTCTGATACTTTGATGTTGGATGTTTGGATGGTGTTCTTCCAATGAAAATGCATCCA | |||||||||
gi|21823600|gb|BQ698284.1|BQ698284 NXPV_065_G08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_065_G08 5' TGATGGCCCTTTTGAAGGACA EST sequence (targeted fragment marked with yellow): GGAGGCGCTTCTGAGCTTCAAAAGGGGCATCGTATCAGATCCACATGGATGTCTCTCCAACTGGACGGCCCATAACTCACATAACGTCTGCCGCTGGAACGGAATTTCGTGCACACCAAACACGAAACGAGTGGTTTCAATTTCTCTCCTTGGCTGCAGATTGAATGGTACGCTATCCCCGTCTATTGGCAACCTCTCTCTGTTGCGGACTTTAAATTTTTCCGCCAATGAATTCAATTNAAAAATTCCAACGNTCAANNGCNNNNCTCTCTCTG | |||||||||
gi|74163904|gb|DT633835.1|DT633835 EST1148766 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFZ27 3' end, mRNA TGATGGCCCTTTTGAAGGACA EST sequence (targeted fragment marked with yellow): CGGCCGGGGACTCACAACCTTTGGCTTTGAAAGAAGAAGTTGGGAGAGAGAGAAATGGATCATAAATCTATTCTTCTGCTCATCACCATGTTTGTGCTCTCTTTTGCTCATCAACATCATGTGTATGAGTATGAGCAGGCGGGTGGATTCACTGCCTTCAATGGACGCAATATGACGGGGGAACCCTCTTCCTCCATGCCCGATAAAAGGGACTTGGAGGCGCTTCTGAGCTTCAAAAGGGGCATCGTATCAGATCCACATGGATGTCTCTCCAACTGGACGGCCCATAACTCACAGAACGTCTGCCGCTGGAACGGAATTTCGTGCACACCAAACACGAAACGAGTGGTTTCAATTTCTCTCCCTGGCTATTGCGGATTGAATGGTACGCTATCCCCGTCTATTGGCAACCTCTCTCTGTTGGGGACTTTAGATCTTTCCGAGAATGATTTCAGTGGAAGAATTCCACCGTCTATTGGCAAACTCTCTCTGTTGCGGACTTTAGATCTTTTCGGGAATGATTTCAGTGGAAGAATTCCACCGTCTATTCGCAACCTCTCTCTGTTGCGGACTTTAGTTCTTTCCCTGAATGATTTCAGTGGAAGAATTCCACCGTCTATTGGCAACCTCTCTCTGTTGCGGACTTTAGATCTTTCCGATAATGATTTCAGTGGAAGAATTCCACCGTCTATTGGCAACCTCTTTCTGTTGCGGATTTTAGATCTTTCCTGGAATGATTTCAGTGGAAGAATCCCACCAGAACTCGGCCGTCTGGTCCAGTTGGAATCT | |||||||||
gi|30356959|gb|CD018309.1|CD018309 NXLV_016_G12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV_016_G12 5', mR TGATGGCCCTTTTGAAGGACA EST sequence (targeted fragment marked with yellow): CGGCCATTATGGCCGGGGTGAAATGTTATGACTAGTCAGCTCTGTATTGGTGTGTCATTGGTATTATTTTTATGTTTCCATCAAAAGGGCCATCATTGTTGNCCAATGGGCTGAACAAANNCTGTANNAA | |||||||||
gi|57883536|gb|CX648707.1|CX648707 COLD1_30_H10.b1_A029 Root cold Pinus taeda cDNA clone COLD1_30_H10_A029 3', mRNA sequence TGATGGCCCTTTTGAAGGACA EST sequence (targeted fragment marked with yellow): ACCGTAACCATGCTCCAGAAGGCATTTCTTTTTTTATACAAGATAAAATGAAACCCCACTCAAACGACACTGCATAGTTCAATCCTCCCTAAGTTTTCATGCTATCATGATAAACCCAGGTTTCACAGGAGTTCATCAATGTACATGAATCCCGGTTTCACAGGAGTTCTCTTCATCTTGAATTTGCTCTGAACGAAAGCCCGTAGAGGAAGCTGACCAAATCACATAATCGATGGACGCTGGGGTGGGTGATAAACATACGGAAGTGGAGGCTTTTTGTCCTTCAAAAGGGCCATCAAATCTGATCCAACTGTAGCTCTGTCCAACTGGACCGCTGAAAACTCAGATAACATATGCTCATGGTAGGGTATTTGGCGAATAAAACACCGTTAAAATAGTGGTTTCTATCATGTCCCCAAAATGAGGGATGGAAAGTAACCTTTCGCCATCTCTTTGCAAGCAACCTCTCCCTATTGCACACTGAAAATTTTCCATCACTTTTTCTATCAGAAAAAATTCATCAGCTTGTTGGGAATACTGTGAAAACCGCTTTGAATACCTGACCTCAGTTTTAATTCGCTACTGGGTTCCTTTCCAAAAGCAATGTCTAATCTACAAACTCACATGGATAATTTATAGAGCCTGAGCAACTGCTCCAGGGTCGTAAATTCAGCGATCTCACTG | |||||||||
gi|13127725|gb|BG318295.1|BG318295 NXPV_012_A06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_012_A06 5' TGATGGCCCTTTTGAAGGACA EST sequence (targeted fragment marked with yellow): GGAGGCGCTTCTGAGCTTCAAAAGGGGCATCGTATCAGATCCACATGGATGTCTCTCCAACTGGACGGCCCATAACTCACATAACGTCTGCCGCTGGAACGGAATTTCGTGCACACCAAACACGAAACGAGTGGTTTCAATTTCTCTCCTTGGCTGCAGATTGAATGGTACGCTATCCCCGTCTATTGGCAACCTCTCTCTGTTGCGGACNNNNGATCTTTCCGCTAATGATTTCAGTG | |||||||||
gi|74156557|gb|DT625290.1|DT625290 EST1159565 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIMAN90 5' end, TGATGGCCCTTTTGAAGGACA EST sequence (targeted fragment marked with yellow): CAGAAATCTTGGAATTCATCTGCTTAAATCGCTGCCCGTCTTTTCCCAGACCGTGTTCCCACACCATCTGATCACGTATGTATGTTTGTTTTTTATTTTCTCAGGGTCTATTCCATTCTGAGATTCTTTTTCAACGGCTGAGAGAGGGTTTTCAGGCATTCTTTAGGGTTTCGTGTTGAGGAGCGAGACAGAGATAATGTCGTCTCCCAATTCCAATCCTAATTCGAATTTGAGGAAGCCCGTGTTTACCAAGATTGATCAGCTTCGACCGGGAACTTCTGGCCATAATTTGATAGTGAAGGTAACAAGTGCCAAGATTGTGCTTCAGAAGGGCCGTCCTGACAGCCAAGTACGTCAAATGCGAATCGCTGAATGTTTAATTGGCGACGATACAGGCATCGTTATTTTCACGGCCAGGAACGATCAAGTGGATCTTATGAAGGAAGGGTCTACAGTCATCTTGCGCAATGCTAAGATCGACATGTTTAAAGGTTCAATGCGACTTGCTGTTGATAAATGGGGTAGGATTGAGGTGACTGAGCCCGCGGAATTCTCCGTGAAGGAGGAGAATAATCTCTCCCTTGTGGAGTATGAGTTGGTCAATGTTCAAGAAGACTAAAACTTATAATTCTGCATAGTGAGGGGTGCAATGCATCCCCTGCATTTCTAATTAAATGTTCGCGTAGTAGGCAAATGCAAAACATGGAATGGACAGTAAGCGATAATACTGGTAATGGGTGGCAGTTTCA | |||||||||
gi|67705750|gb|DR117440.1|DR117440 RTMG1_7_A11.b1_A029 Roots minus magnesium Pinus taeda cDNA clone RTMG1_7_A11_A029 3', mRNA se TGATGGCCCTTTTGAAGGACA EST sequence (targeted fragment marked with yellow): AATCTGCAATCAACATTTACCGTAACCATGCTCCAGAAGGCATTTCTTTTTTATACAAGATAAATTGAAACTAAGCTTTCATGCTATCATGATAAACCCAGGTTTCACAGGAATTCATCAATTTACATGAATCCCGGTTTCACAGGAGTTCTCTTCATCTTGAATTTGCTCTGAACGAAAGCCCGTAGAGGAAGCTGACCAAATCACATAATCGATGGACGCTGGGGTGGGTGATAAACATACGGAAGTGGAGGCCTTTTGTCCTTCAAAAAGGCCATCAAATCTGATCCAACTGTAGCTCTGTCCAACTGAACCGCTGAAAACTCAGATAACATATGCTCATGGTACGGTATTTGGCGAATAAAACACCGTTAAAATAGTGGTTTCTATCATGTCCCCATAAAATGAGGGATGGAAGGTAACCTTTCGCCATCTCTTGGCAAGTAACCTCTCCCTATTGCACACTGAAAATTTTCCATCACTTTTTCTATCAGAAAAATTTCATCAGCTTGTTGGGAATACTGTGAAAACCGCTTTGAAAACCTGACCTCAGCTTTAATTCGCTACTGGGTTCTTTTCCAAAAGCAATGTCTAATCTACAAACTCACATGGATAATTTATAGAGCCTGAGCAACTGCTCTACGATCGTAAATTCAGCGATCTCACTGAGTTTCCATGAGATTGCAAGTTTGCAACTGGTATATATATGTTAGAGTATACTCTGATACTTTGATGTCTGAATTCCGAAGATCAGTTCATTTGGTTGTTTGAATGGTGTTCTTCCAATGAAAATGCTTCCATTTCAAATACCAGAAGCCTCTTCACATTGAATGGTATTTTTC | |||||||||
gi|61778480|gb|DN631596.1|DN631596 EST982412 Subtracted pine embryo library, Lib_C Pinus taeda cDNA clone PTACC19, mRNA sequence TGATGGCCCTTTTGAAGGACA EST sequence (targeted fragment marked with yellow): ACGCGGGGGCGGAACGTTTCTTCAACACAGAAATCTTGGAATTCATCTGCTTAAATCGCTGCCCGTCTTTTCCCAGACCGTGTTCCCACACCATCTGATCACGGTTTCGTGTTGAGGAGCGAGACAGAGATAATGTCGTCTCCCAATTCCAATCCTAATTCGAATTTGAGGAAGCCCGTGTTTACCAAGATTGATCAGCTTCGACCGGAAACTTCTGGCCACAATTTGATAGTGAAGGTAACAAGTGCCAAGATTGTGCTTCAGAAGGGCCGTCCTGACAGCCAAGT | |||||||||
gi|21823632|gb|BQ698316.1|BQ698316 NXPV_068_C05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_068_C05 5' TGATGGCCCTTTTGAAGGACA EST sequence (targeted fragment marked with yellow): GGAGGCGCTTCTGAGCTTCAAAAGGGGCATCGTATCAGATCCACATGGATGTCTCTCCAACTGGACGGCCCATAACTCACATAACGTCTGCCGCTGGAACGGAATTTCGTGCACACCAAACACGAAACGAGTGGTTTCAATTTCTCTCCTTGGCTGCAGATTGAATGGTACGCTATCCCCGTCTATTGGCAACCTCTCTCTGTTGCGGACTTTAGATCTTTCCGCTAATGATTTCAGTGGAAGAATTCCACCGTCTATTGGCAACCTCTCTCTGTTGCGGATTTTAGATGTTTACGGGAATATTTTCAGTGGAAGAATTCCACCGTCTATTGGCAACCTCTCTCTGTTGCGGGCTTTAGCTCTTTCCGGGAATGATTTCAGTGGAAGAATTCCACCGTCTATTGGCAACCTCTCTCTGTTGNGNANTNTNNNNNNTTCCCTCNATGATTTCAGNGGAAGAAANNNNACGTCTNNNGGCAACCTCTCTCTGTTGCGGGCTTTAGCTCTTTCCGGGAATGATTTCAGTGGAAGAA | |||||||||