| mature miRNA: TGATTGAGACGAGTCCATATC species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74156058|gb|DT624731.1|DT624731 EST1159066 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIMAI50 5' end, TGATTGAGACGAGTCCATATC EST sequence (targeted fragment marked with yellow): CACTTTCAAGGTAGGGGGTTCTGGCGCAGTGGCGGACGAGGTGCATGTAATAGTGGAGCAACTGCTCAAAGCAGCAGAGGCTGTGGAACTTGGCAACTTAGATCATGCTCAGGCGATATTGGCGCGGCTCAATCAGCATCTCTCCCCTCTCGGAAAGCCCCTTCAGCGGGCGGCTTTCTATTTCAAGGAGGCTCTCGCTTCTCGAATCCTCAACACCACCGCCACCAACACTGGCGGAGACAACCGGAACGCTACTGTGACTGGCACTGCAACTTCAAATATCTCTTCACCGCTGGACATGGTGCACAAGATAAGCGCATACAAGAGTTTCTCGGAGGCCTCTCCGCTGGCTCAATTCGCACATTTTACTGCCAACCAGGCATTCCTGGAAGCGCTGGAAGGTGCAGAGGCAATACATATCATAGATTTCGAAATCGGCTTGGGGGGTCAGTGGGCATCGTTTCTTCAAGAACTCGCTGTCAAACTCGGCGGCGCTCCGCCTGTCCGCATCACCGCGCTCGGCTCCTCGGCCTCCTCGTCCCTGGAGCTCCATCTTACGAGGGACAATCTATGCAATTTCGCCAAGCAGCTCAATGTTCCCTTCGAATTCGAGCTCCTCCATTTCGACCACATCGAGTCCCTGACGCTCCGCGAGCGGGAGGCCGTGGCGGTTAATCTTTCATTGTTGCCTTCTACTTTCAGTTCGCCGGACTCGATCTCGCGACTTCTCCGCCTCGTGAAGAACCTCGCGCCTAGGGCCGTGGTGGTGGTGGACGCCGAAACCACCGCCACCGCTGCCGCAGCCTCCGCCGCAACCACCTCCTCTGCCTCTTTTGTTCACCATTTCCTGGAAGCGCTGCAATTTTACTCTTTCCTGTTCGATTCCCTGGATGCCGTGAACATCAACATGGACGCCGTGCACAGATCGAGAAGTTCCTGCTAGCTCCGAGATCGACGCCACCATTTCCTCCGCGCGCTCGCCATGGAGACCCTGTTC | |||||||||
gi|66690032|gb|DR012526.1|DR012526 HEAT1_13_A01.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_13_A01_A029 5', mRNA TGATTGAGACGAGTCCATATC EST sequence (targeted fragment marked with yellow): TCGAGCCAAACTTCGCAGACCCGGGGGCCTTTGCTTTCAGTAACAATAATCTCAGCGATGTCATCGCTCCGCCACAGCACGCTTCTGTCCCGTCCAGTTTCCGCCCGTCTTATGCCACATTGCCTAACTTGCCCCAACAACAATTTATTCCGCCGCCTCCTCCACCTCCACCTCCTCCACCACCACCATTTGCCTACAATGGCCCCATGCCCACGCCCTTCGGTCCCAATGCCTATCATCCGGAGGTTCTTTTCTCCGGGCCAGCAGTCTACGGTTCGAATCCCGTGCAACACTTGGGACCAGATTTTCCCCGCTTTAACATGGCCGCGGATCCAAACCGGAACAATAATAATCTTTTGTTCGACATGCCACACCCGCCTCCTCCCAAACGTTTTGGACTTGAGCACCAGCTCTGGCAGCAGACATTCAAGCAGCAAGAATACATGAACATGATGAAACCCCAGCAGCAGCAAGAACTGCTGCAGTCTCTGCACAGGCGGCAGCAATTCCTCCACCAGGCACCGCCTCCGTCGCCGCACCACCAGATGAGGCAGAAGGCCGTTGTGAATCACACTTTCAAGGTAGGGGGTTCTGGCGCAGTGGCGGACGAGGTGCATGTAATAGTGGAGCAACTGCTCAAAGCAGCAGAGGCTGTGGAACTTGGCAACTTAGATCATGCTCAGGCGATATTGGCGCGGCTCAATCA | |||||||||