miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGATTGAGCCGCGCCAATATC
species: Brassica rapa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|119425430|gb|DY013547.1|DY013547 8RDBRH_UP_025_D04_17SEP2003_026 Brassica rapa - 8RDBRH Brassica rapa cDNA 5', mRNA sequence

TGATTGAGCCGCGCCAATATC
|||||||.||||.| ||||||
ACTAACTTGGCGTGATTATAG

EST sequence (targeted fragment marked with yellow):
GGCAAATAGCCACCTTCTTTTCTCTCCTCTGATTCTTCTACTTAGTTCTTTTATTTTGGACGTTGCTAAAAATAAGAGTTCTGCGCGGATCCGATGATCTTCACTGGTAAAGTAACATTTTTAGTGCCGAGATCATTTTATATGTTTATTTGATCTATTAGTTCATGATATTACTTTTATTTTTGGTTTCTCGGTTTTGTGGAGCTAACTAGCTAGTGATGAAAATCAGATGAGACGGGTTTTGTATTGTGATGTAAGCTGGTCAAGCGAGATATTAGTGCGGTTCAATCAAATAGTCTCACTCTTAGTTGATAGAGATTGATTTTGTTCGATTGAGCCGTGCCAATATCACGCATATAACCAAGATGGTTATTAACCTAAAAAGTATATTGTCAATCATGTTAAAGGTATTTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGTC