| mature miRNA: TGATTGAGCCGCGTCAATATC species: Raphanus raphanistrum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|167499777|gb|FD984920.1|FD984920 RR4GV41JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence TGATTGAGCCGCGTCAATATC EST sequence (targeted fragment marked with yellow): GCAGCATTCGAAAGTCTGAATGTCCTAAAGAGCTTGAGCCTGCTGATAAAAGAGCTCCTGTACATGTTAATTTTATGAGAAGAGACGAGATATGCCCCGAACGTGAGAAACCTACGGTTGCATTTCAAGGAGTGGGAAGGACACTAGGAGGCGGTGCTAGCTCATCAACCCCTCCAAGCCTAAGCAACCCAACCGATGTAGCCGCGGCTCCATCACCGTCACAGAGTCCTGTTGTAGTAGATGAAACTCTTCCATCCACTTCTATCCAGCTTAGACTCGCTGACGGGACACGCATGGTGGCTAAGTTCAACAACCAGCACACGGTCAACGACATTCGTGCTTTTATCGACTTTTCTCGACCAGGGAGTCCAATCAACTCCAGCCTTCAGGTCATGGGGTTCCCCCCTAAGCCGCTTACTGATCCTTTTCAGACCATTGATGAAGCCGGTCTCGCAAACTCTGTAGTCATTCAGAAATTCTAGAAACTTTTTGTTTCTTTTGTTGTTCTTAAAGAGAGTACTGTTACCCTCCAAGATTATCCAAGAAATG | |||||||||
gi|167503883|gb|FD989098.1|FD989098 RR4GV41TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence TGATTGAGCCGCGTCAATATC EST sequence (targeted fragment marked with yellow): GCCTAAGCAACCCAACCGATGTAGCCGCGGCTCCATCACCGTCACAGAGTCCTGTTGTAGTAGATGAAACTCTTCCATCCACTTCTATCCAGCTTAGACTCGCTGACGGGACACGCATGGTGGCTAAGTTCAACAACCAGCACACGGTCAACGACATTCGTGCTTTTATCGACTTTTCTCGACCAGGGAGTCCAATCAACTCCAGCCTT | |||||||||
gi|161517759|gb|EY897646.1|EY897646 RR1DB09TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence TGATTGAGCCGCGTCAATATC EST sequence (targeted fragment marked with yellow): GGAGAGAGAGAGAGAGATGTCTTCAAAGGACAAGCAACCGTCGAAGCCGTCTGGTGGTCGGACCAGTGGTATCCGTACACTTTCCGATCTGAACCGAAGATCAGGACCGGACTCCGACAGTGATTCCGATGGTCCTCAAGAGTACTACACCGGCGGAGAGAAAAGTGGTATGCTAGTTCAGGATCCTTCGAAAGAACCAAAACACGACGATGTTGATGAGATATTCAACCAAGCAAGGCAACTAGGAGCGGTGGAAGGACCTCTTGAGCGTCCTCCCAGTTCCAGCAGAAGCTTCACTGGAACCGGGAGATTGCTTTCAGGAGAAAGCGTGCCAACCGCTCTTCAACCGCCCGAGCCTGTGATTCACAGTATCGTTTTCTGGTCTAACGGTTTCACTGTTGATGATGGACCTTTGAGGAAGTTGGATGATCCAGAGAACGAGTCCTTTCTCGACAGCATTCGAAAGTCTGAATGTCCTAAAGAGCTTGAGCCTGCTGATAAAAGAGCTCCTGTACATGTTAATCTTATGAGAAGAGATGAGATATGCCCCGAACGTGAGAAACCTACGGTTGCATTTCAAGGAGTGGGAAGGACACTAGGAGGTGGTGCTAGCTCATCAACCCCTCCAAGCCTAAGCAACCCAACCGATGTAGCCGCGGCTCCATCACCGTCACAGAGTCTTGTTGTTGTTGATGAAACTCTTCCATCCACATCTATCCAGCTTAGACTCGCCGACGGACACGCATGGTGGCTAAGTTCACAACCATCACACGGTCAACGACGTTCGTTC | |||||||||