| mature miRNA: TGATTGAGCCGTGCCAATAT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|58599944|gb|CK010472.1|CK010472 30563rsicef_9590.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): CCCCGGGCGCAGGAATTCGGCACGAGGGCGAAGCGCCACACTCCGGCCCGACAATCTCTTCCTCCTCCACAAGCAGCCCCAGCCACCGCCGCCGGCGCCCGCGCAATGCCTCCCGTTTCCAACGCTACATAGCACGGTACCCTTCCAGCTCCAGCCTTCGATGCAGCATCCGCGCAACGCGATGAAGTCAACCGCGGCGGCGGCGGCGGCGCAGCAGCAACACCTCCTGGACGAGCTTGCAGCGGCGGCGAAGGCAACCGAAGTCGGCAACTCCATAGGCGCGCGAGAGATATTGGCGCGGCTCAATCAGCAGCTTCCCCCAATTGGGAAGCCTTTCCCTCCGCTCCGCCTCCTACCTAAAGGACGCCCTCCTCCTCGCGCTCGCCGACGGNCACCACGCCGCCACCCGTCTCACGTCTCCGCTCGACGTCGCCCTGAAGCTCACCGGTTACAAATCCTTCTCCGACCTCTCCCCCGTGCTCCAGT | |||||||||
gi|88432851|gb|CI690701.1|CI690701 CI690701 Oryza sativa (japonica cultivar-group) 3 weeks after flowering ear Oryza sativa Japo TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): GATTCAGATCACTCATTCACACTAACCCTAGCTAGCAACCTGCAACCTGCATAGTATATTGCATTGCGCCCAAGCTTTCTTCTTCTTCTTCTTCTTCCCTCGCCGACAACCTCCTCCGTTTGCCCGGCCATTGTTCTTCAGAGCTTGGTCGCGATAGAAAGAAATGAAATTGTAGCTATGATGTTGGCCCGGCTCACTCAGATGGATCATCGGTGCAGAAGAGTGCATGAATCTGATGCAGTCTCAGTGTAGTATGCTCCATGCTGGAACTTCTGATTGAGCCGTGCCAATATCTCAGCACCATTTTTATGCAATCATGCGTACAGATCACTCCCAAAGTCTCAATTTACCATCACTAATCTGC | |||||||||
gi|86435670|gb|CI106903.1|CI106903 CI106903 Oryza sativa (japonica cultivar-group) Panicles less than 5cm stage Oryza sativa Jap TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): TTAATTCTGAATTTCNATTTTTTGGCGCGGCTCAATTATATTACGCCAACCTCCATACAATCTGGGTTCAATTTTTTCCCCTCTGTACCTGTTTGAGCGCTACAAAATGCTCAGTAGTTACATCTCAGTATTTTACCCCTGCAAGGATTCTACTGCTCCCTTGTACAGTTGTACACACTTTTCTACTGTACTACGTCCATAGACTGTAAAAAAAGAAAATTACTGTCCACTTTTTACCAGTGGATGCTCTGCTCAAAGCAGCAAGAGAGAATCAGAAGAATCATCCGCTGAACGGCCTGTACACCTTGAGCGCGTCGATGACGTCAGCAATGGAGCCCGCGGCGGCGGCGATGGAGACGACGAGGCAGCACGCGCTGAGCGTCTTGAGTGAGACCCACCTCGCGCTGCCACGTGGCACGCCGCGCTGCGCGATGTACATCTCGACGGGGAAGTAGACGGTGAGCGGCCAGAAGGAGACGGCGCCGAGGAGACCCACCACGTTGCCGAAGAAGGGGAGGAGCATGGCGACGACGGTGGTGAGGCAGACGAA | |||||||||
gi|117246287|gb|CT862661.1|CT862661 CT862661 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): TTTTTTTGTTTTTGAGAATCCGCGGGGCGGCCGCTCTAACTGTGGATCCCTGGGCTGCAGATTCGGTACTCTTTAAAGGGGTCGAGAGACGGAATCTCCGCCTCCCCTATATAAGATAGGAGTACTCTACATGCTGCTATGATCAATATTGCCCTCATGTCCTCCTCGCTCTTGCCATCTCCCCAACCCCACCACCCTGCCGCTGCCGGAGCCGGACAGCAGCAAGTCGCCGGAGCCCACCTCCGTGCTCTACAACCGCAGCAGCCCGAGCACCTCCCTCGGCTCCTGCTCCTCCAAACCACCGGAGGACCCTCCTCCTCCCCCCATCGCCGCCGACGACGACTGCGACTGGGACGCCGTCGTCGACATGCACATGCACATGCTCGCCCCCGCCCCCGCCCCCGACTCCTCCTTCTTCCGCTGGATCATGGATACCGGCTATGCCGACGCCGACACCTTTCCCGACCACCCCTCCTTCGACTCCGACCTGCTCCAACTCCCCATGCCCATGCCCTCTGACCATCCTCCTCAGCCGCTCGTCGACGACCTCCCCGACGCCGCACGCCTCCTCGACGCCGGGGACTCCACTTCCGCTAGGGAGATATTGGCGCGGCTCAATCATCGCCTCCCCTCTCTTCCGTCGCCGCCGGGCCATGCCCACCCTCCGCTCCTCCGCGCCGCCGCCCTCCTCCGGGACGCGCTCCTCCCGCCCACCGCCCTCCCCCGTCTCCTCTACTCCCCTCGACGTCCCGCTTCAGCTCGCCGCGCACAAGGCCCTGTCGGACGCCTCCCCGAACGTGCAGTTCCCCACCTCACATCCACCCCAGGCTTTCCTCGAAGCGGTTCGGCTCCCCCGCGCCGCCTCCACCTCCTTGAATTTAAAGTTCGCTTCGGGGGCCCATTGGGCCCCCTCTCATGGTCAGAACTTCGGCAACCACTGGGGCCCTCGCTTGTTGGCCCGCCCCCCAAAACCCCCAAGGGGACCACAATTGGTGTCCCCCCGGGTTCCTCCCCCCCCCTTCGAACTTCCTCCTCCCAAAAAAAAGCCCCCCCCGCTGCTTTTTCCCCCCAAAATTTCGTTATCCCCCTTTATAATTTTATACCCCCCCCCTTTGTTTTTCTTTCCCCCCCTTCTAACAGACCGGTGTCCCCCCAACCTTTTTGTGGTAAATCTTCTCTTTGCCCGCCCCGCCTTCCGAAAGATAAAAAGATCGTGTTGGGGGTGCGTCTCTACTATATTTTTTTTTCATTATCTATACCCTCTCTATAGGTACTTTTCTTTCCTCCGTGGGGTGTGTTGCTCC | |||||||||
gi|58668116|gb|CK056802.1|CK056802 63331rsicek_8081.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): GCACGAGGTCTCTACTTGTCCACTTTTGCTTCAAATTTATATTTGGCCTTCTTCTTATTGAAAGCAGGGCAGAGTGAGCACGATATCTTCTATCTGATAGACAAGGGCGATGCCTTCGATTACATGTGATAAGGTTGTTCTGGATAATTTATATGGAGAAATAGCCAAGTCTGTGGTGACGATTAAAAGATACAACCGAACTGGGCTTGTTAACTTTGCCACCGGGTTTATCATCTATGCAACAAGGTCTGAAGTTCTAGTATGCACAGATCACACAGTACTTAAACAGGGGGAAGACACATATGTATATTACAGTGATGGTACTGCTCGTCAAGCATTTGAATTCATTAAACGCACACCATGTGGACATGCAATTTTATTAGTATCTGTACAACCTGGCGAACGCCGCCAGTATCCGGTCTCATTCAGTACAGTACGAGCAAAAAGAGAGGAGATTTGTATGATTGCACGGGTCAATCATGACGGAGATCCTGGATTTATGTCCGGCATTGTAGTGGCCCCGAG | |||||||||
gi|88692682|gb|CI736257.1|CI736257 CI736257 Oryza sativa (japonica cultivar-group) after pollination embryo Oryza sativa Japonic TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): ATCCCTAAGTCCATTCCTTCACCACACCTCTGCTCGCCTCCTTCTCCATCTCTCTCTAAGCTGCATGCCTTCCATTGGAGACAAGGGAGAGAACCATTGCATGTCCATCGTCCATGCATCTGCATATGCATGGTGTTGTTCTTCTCGTCTACCTCCTGCTTCTACATGTGACGGAGAAGAAGGGAATGAAATGGTAGCTATGATGTTGGCTCGGCTCACTCAGACGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTACCTCACTTGTGTTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGTGTACGTACGCGCACGCACGGTTGCACCATGCATCGACGACGACCACTGCCATGGCCGCCGGTA | |||||||||
gi|88397755|gb|CI684697.1|CI684697 CI684697 Oryza sativa (japonica cultivar-group) 30 days after pollination pistil Oryza sativa TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): GATGTTGTGCTTTTGCTCCTAGCTAAGCTCTCCTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTCATCTACAACTACCTCTCCCTCACTTTTGCATTGCCTCCAAGAAGCCATATTAAAGGATCCTACGACTCCTTCCTCTCCCTCCTGCTCCTCCTCTTCTCATCTCCTTCACTTCTGCTTCTGCATGAAACCAAGAAAAAAAAACTAGTTGCTTACTTGCTTTGCATAGTTAGCTAGCTGTTGTGTTTCTCTGATCCCATGTCCTCATGAACTCTTGTTTGATCCTAGTGAGGTGAGAGTACTTGAGAGGGAGTGTATNGATTGGATTGCTGTTNTTATCTCTGATGATTTGCCTTGTTTGGCTGATCTGAATGCTGATCGTTGGGGGATTGTNCTGCTCTCTATGTGGGAACGGGATATTGGTGCGGTTCAATCAGAAAGCTTGTGCTCCGAAGGCGAGGGGCTCCACTCTTTGATT | |||||||||
gi|29659720|gb|CB655995.1|CB655995 OSJNEc09N21.f OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc09N21 5', mRNA sequence TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): CTCTTCCTCCTCCACCACCAGCCCCAGCCACCGCCGCCGGCGCCCGCGCAATGCCTCCCGTTTCCAACGCTACATAGCGCGGTACCCTTCCAGCTCCAGCCTTCGATGCAGCATCCGCGCAACGCGATGAAGTCAACCGCGGCGGCGGCGGCGGCGCAGCAGCAACACCTCCTGGACGAGCTTGCAGCGGCGGCGAAGGCAACCGAAGTCGGCAACTCCATAGGCGCGCGAGAGATATTGGCGCGGCTCAATCAGCAGCTTCCCCCAATTGGGAAGCCTTTCCTCCGCTCCGCCTCCTACCTAAAGGACGCCCTCCTCCTCGCGCTCGCCGACGGCCACCACGCCGCCACCCGTCTCACGTCTCCGCTCGACGTCGCCCTGAAGCTCACCGCTTACAAATCCTTCTCCGACCTCTCCCCCGTGCTCCAGTTTGCCAACTTCACGGTAACTCAGGCGCTTCTGGATGAGATCGCCAGCACAACCGCGTCTTGTATCCGCGTCATTGATTTCGACCTCGGTGTCGGCGGCCAGTGGGCTTCGTTCTTGCAGGAGCTTGCTCACCGCTGTGGCTCTGGCGGTGTGTCCTTGCCGATGTTGAAGCTCACAGCCTTCGTCTCAGCCGCCTCCCACCACCCGCTTGAGCTGCATCTTACTCAGGATAACCTCTCACAGTTTGCTGCTGATCTTGGTATTCCATTTGAGTTCAATGCTATTAATCTCGACGCATTTGATCCTATGGAACTCATTGCTCCTACAGCTGATGAGGTTGTTGCAGTAAGCCTCCCAGTTGGTTGCTCAGCACGCACTCCACTCCCAGCTATGCTTCAGTTGGTGAAACAGCTTGCTCCTAAGAT | |||||||||
gi|29624378|gb|CB629389.1|CB629389 OSIIEb05J08.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb05J08 3', mRNA sequence TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): TGAGAGAGCTTCCAAAAAAAGCTGGTGAACAACTAGTTATCCTATCTCAGGTTCTCATGGATGATATTAATGTTGGTTATGAAAGGCTCGCTGAACTACAGGTAAAAAGGGTGAACGGTGTGGAAGTAGAAAATCTGAAGCATCTGTGCAGCCTTGTGGAAAGCTGCACTGAAGAAAACCTGAGATTTGATCTGGACGATGAGCGGGTGATCGTCCTGAAATATCAGAACGCAAAGCTCGCCACGTCCCGGATCTTAAAACGGCACAGGATACCGTCGGCCATATCTGCTGACCTCGTCGACGAACAGGCGACTGACGACGGTGAGGAGGCGACTAATGGTGAGATCGAGGCATCATGCACTAGCTAACATTGTTTTGCATACTTAGCTAGGCAATTACCTGTGGAAGAATAGATAGATATTAGCACGGTTCAATTTCCAGAGACAGACGCAGTGAGGCGAGGACTGCCCGGAGCACTGCGCTGGTTGCAGCGGCTCCTGTTCGGCCGTCTCAGTTTTGACGTGAGGGGTGGGTGCTCCGGTTTCCCTCAGCAAATAAGAAGTGAAGAACCCAAGTTCTTCAGCCTCATGATATGTTGTAACACAAATTATCTTCCCCATTTCTTCCCAATATTTCTCATTCTTTCACCAAAAGTGCCGTGGCAGTCACCTCATGTTGAACTCAGATTATATATATCATCACGAAACAGAGCATGGAAACAGGAGTTACAAAGTTTACAGCTCGATGAAAAAAAG | |||||||||
gi|58657192|gb|CK045872.1|CK045872 44230rsiceh_12912.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): GCACGAGGGCCTGATGACATCTACCTCGCCGTACCAGCTACGCCTGCGGCGGCGGCGGCGCAGGGGCTCCCGTTTTCACCACTACATGCCTCGGTTCCGTTCCAGCTCCAGCCTTCGCCGCCACCGACTCGCGGGGCGATGAAGACGACGGCTGCGGAGGCCGCGCAGCAGCAGTTGCTGGACGAACTGGCAGCGGCGGCAAAGGCAACCGAGGGTGGCAATTCCGTCGGCGCGCGCGAGATATTGGCGCGGCTCAATCAACAGCTCCCCCCTCTTGGGAAGCCCTTCCTCCGCTCCGCCTCCTACCTCAGGGAGGCCCTCCTCCTCGCACTCGCTGACAGCCACCATGGCGTCTCCAGCGTCACCACGCCGCTCGACGTTGCCCTCAAGCTCGCGGCCTACAAGTCGTTCTCCGACCTGTCGCCCGTGCTCCAGTTTGCAAACTTCACGGCAACTCAGGCACTTCTTGATGAAATTGGTGGCACCGCAACTTCCTGCATACATGTCATTGACTTCGATCTCGGTGTTGGCGGTCAGTGGGCTTCCTTCT | |||||||||
gi|58671994|gb|CK060680.1|CK060680 63832rsicek_9194.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): GCACGAGGCAATCACCAGTCGCCGCATCTCCAGCCACCGCTCAAACGCCACCACGCCATTCCAGATGACCTCTACCTCGCCCGTAACCAGCAGCAGTCATCCGCGGTGGCGCCAGGTCTCGCCTATTCACCACCGCTACATGGCCCGGCTCCGTTCCAGCTCCATCCTTCGCCGCCACCGATTCGCGGGGCGATGAAGTCGACGGCGGCGGAGGCGGCGCAGCAGCAGCTGCTGGACGAGTTGGCAGCGGCGGCAAAGGCAACCGAGGCTGGCAATTCCGTTGGCGCGCGAGAGATATTGGCGCGGCTCAATCAACAGCTTCCCCAACTTGGGAAGCCCTTCCTCCGCTCCGCCTCCTACCTCAAGGAGGCCCTCCTCCTCGCACTCGCCGACAGCCACCATGGCTCCTCCGGCGTCACCTCGCCGCTCGACGTTGCCCTCAAGCTTGCAGCATACAAGTCTTTCTCTGACCTGTCACCTGTGCTCCAGTTCACTAACTTTACCGCAACACAGGCGCTTCTTGATGAGATTGGTGGCATGGCAACTTCCTGCATCCATGTCATTGACTTTGATCTCGGTGTTGGTGGTCAGTGGGCTTCCTTCTTGCAGGAG | |||||||||
gi|88990671|gb|CI108058.1|CI108058 CI108058 Oryza sativa (japonica cultivar-group) Panicles less than 5cm stage Oryza sativa Jap TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): TTTTTTTCATTTTTTGGCNCGGCTCAATTATATTACGCCAACCTCCATACAATCTGGGTTCAATTTTTTCCCCTCTGTACCTGTTTGAGCGCTACAAAATGCTCAGTAGTTACATCTCAGTATTTTACCCCTGCAAGGATTCTACTGCTCCCTTGTACAGTTGTACACACTTTTTTACTGTACTACGTCCATAGACTGTAAAAAAAGAAAATTACTGTCCACTTTTTACCAGTGGATGCTCTGCTCAAAGCAGCAAGAGAGAATCAGAAGAATCATCCGCTGAACGGCCTGTACACCTTGAGCGCGTCGATGACGTCAGCAATGGAGCCCGCGGCGGCGGCGATGGAGACGACGAGGCAGCACGCGCTGAGCGTCTTGAGTGAGACCCACCTCGCGCTGCCACGTGGCACGCCGCGCTGCGCGATGTACATCTCGACGGGGAAGTAGACGGTGAGCGGCCAGAAGGAGACGGCGCCGAGGAGACCCACCACGTTGCCGAAGAAGGGGAGGAGCATGGCGACGACGGTGGTGAGGCAGACGAACGCCGAGC | |||||||||