miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGATTGAGCCGTGCCAATATC
species: Sorghum bicolor
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|9307408|gb|BE365851.1|BE365851 PI1_2_F02.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence

TGATTGAGCCGTGCCAATATC
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ACTAACTCGGCGCGGTTATAG

EST sequence (targeted fragment marked with yellow):
GCACGAGGGCCTCCTCCACCAGTACCAGCACCAGCCGACCCCCGCCACAACCTTCTTCATGCCCATCCCCTCCTTCCCCAACCACAATCAGCAGTCGCCACTCGTTCAACCACCGCCCAAACGTCATCAATCCATAGGGGATGACCTCTATCTCGCCCGAAATCGGCTTCTGTCTCCGCCGGCGGGGCAAGGTCACGCCTTTCCACCACTAAATGGTCCTGCTCCGTTCCAGCTCCAGCCTTCGCCACCACCGCCCCACGGGGCGATGAAGACGACGGCTGCGGAGGCAGCGCAGCAGCAGTTGCTGGACGAGCTTGCGGCGGCGGCAAAGGCCGCTGAAGCCGGCAATTCCATTGGCGCGCGAGAGATATTGGCGCGGCTCAATCACCAGCTTCCCCCGCTCGGGAAGCCGTTCCTCCGCTCCGCCTCCTACCTCAA