miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGATTTTATTTTTGGCAATGC
species: Gnetum gnemon
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|158999101|gb|EX949795.1|EX949795 lk01c01.g7 Gnetum gnemon leaf (NYBG) Gnetum gnemon cDNA 3', mRNA sequence 

TGATTTTATTTTTGGCAATGC
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ACTAAAATAAAAACCGTTACG

EST sequence (targeted fragment marked with yellow):
AAACCACTCTTCCAAATGGTTTCCACGGACGTCCAAGATGCATATAGCCTGTTTCACCGTTCCCAGTAATCACACACCTCAAAAATACATAGCCTGTTGTTTCTTGAGCTGATTGCCGCGATTGTGCAGTAATAAAACCTGCAGATTTGCAGTGAATGTGACAATGCTCAAACAATGCTGTAGCATTGCCAAAAATAAAATCAACACTGCCTTCGATATAACAATCTCTCAAGTAATGCTTGCCAAAATGGAGATAAGCAGTATCCTGCC