| mature miRNA: TGCACACTTGCGAGTCCGTGG species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22076927|gb|BQ825703.1|BQ825703 1030129B12.x1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona TGCACACTTGCGAGTCCGTGG EST sequence (targeted fragment marked with yellow): TTTTTTATCGCATCGATCGTTACATCTGCATGTCCTAATATGTGCCCTCCACGGGCCTGTGAACTCTCCCTTCGCAGCAGCACATTCCGTTCCGCTCGTGCTACCCGTCGGCCAACCGAGTCATTGCCATGCAATACCTCACGTACAACTACATTTCTTGTACCTTTCGTCCATCTTTGCCCACCGAATTGCATGTGTGCAGTGGCCCGGGGTGCCAAAATGTGGGGCTGCACCAAGACCCTGACAGCCGCTCCCGCCCGACCGCCGACGCCCAATCCCAACTGTCCAGCAGCCCTTAGTGTACAACACGAATGCTTGCCCTCATGGGCACGCCGGAGCGCACCATCAACAAGCCATGAAATAAAATACATACTGCAATGCAGCTAAGAATTTAGCGCTGCTCAACACCAAAAACGTTCAAACTATAGGGGTGCCGTTATCCGCACCAGCCACTACCGACAGGCACGCCGCCAATACACGGGCATGTTGCGCGCCCTTGCTCGCAGTCCTCGTAAAATGGCATGTCCGTATTGCAAAAAACTGCGATTGCAAAGCCA | |||||||||
gi|161795566|gb|FC085028.1|FC085028 CACW14377.rev CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cD TGCACACTTGCGAGTCCGTGG EST sequence (targeted fragment marked with yellow): ATTCGGTTTAACTTCCAGAAGCGCTAAGATTTTACTAACAGGCCTGGTTTTGTTTGCTTCTTGTGCCAAGCGGCACGGGAGTAGCACGGCATGCACTGAGTGCGTCAAGTACCGGTACTTGCTCCCGTCCGTGAACCTTACTGACTTGCATGTGTGCAAAGGGGGGGGGGGTGACCCACGATCATAAGGTTAAGAGATTGGCATGAGTGGCCCGCGAGTGAGAGAGTGTCATTCTTTGAGACGTGTTTGCGAGAAAGTGATGATTGCGCATTCCGTAAGTGTGGGCGTGGTTAGTTGGTTGACCCGGAAGGAAACGGGTACGTAGATACGTAGGTACGATTGTGTCATTACAGGAGGAAGCGACACGGTGTAGATGATCTAAGCGCCCAAGTAACGCGCGCAGGGCCCATTGAGAAGGCATGCAAGTTGTACGCATGGTTATTTGCGTCATTGAGCGACCAGGGCCTATGGCCGTCATGCTTAAGGAACCCGATTCAAGAGTGAGTATGGTAGTGCATAGACGCACACAGCTGCACATACACATGAGTAATGTAGTGGAGGAAACGCACGCACTTGGAACGTTGGCGAAAGTAACGGATGGCCCTCATACACCACGGGGGCATGTCGCACCCATGAAGGGCACTGTAATGTATTGTGGTCAAAAAAAAAAAAATCAAACAAAAAAAAAAAA | |||||||||
gi|14224622|gb|BG843438.1|BG843438 1024002G08.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN TGCACACTTGCGAGTCCGTGG EST sequence (targeted fragment marked with yellow): TTTTTTATCGCATCGATCGTTACATCTGCATGTCCTAATATGTGCCCTCCACGGGCCTGTGAACTCTCCCTTCGCAGCAGCACATTCCGTTCCGCTCGTGCTACCCGTCGGCCAACCGAGTCATTGCCATGCAATACCTCACGTACAACTACATTTCTTGTACCCTTCGTCCATCTTTGGCCCACCGAATTGCATGTGTGCAGTGGCCCGGGGTGCCAAAATGTGGGGCTGCACCAAGACCTGACAGCCGCTCCCGCCCGACCGCCGACGCCCAATCCCAACTGTCCAGCAGCCCTTAGTGTACAACACGAATGCTTGCCCTCATGGGCACGCCGGAGCGCACCATCAACAAGCCATGAAATAAAATACATACTGCAATGCAGCTAAGAATTTAGCGCTGCTCAACACCAAAAACGTTCAAACTATAGGGGTGCCGCTATCCGCACCAGCCACTACCGACAGGCACGCCGCCAATACACGGGCATGTTGCGCGCCCTTGCTCGCAGTCCTCGTAAAATGGCATGTCCGTATTGCAAAAAACTGCGATTGCAAAGCCAAACCCCAACCCAACCTTGCAAGGATGCTCGGGTCGCGGCAGCCCTTGCTGCGTGGCTTGGCGCCTACCACGCACAAACATCCAGCCTAATCATTGCCCCGCGCAACACGAGGGCAATTTGCTAATGAAGAGCGAGTCACACGTGTGCTTGGCACGCTACA | |||||||||
gi|161795567|gb|FC085029.1|FC085029 CACW14377.fwd CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cD TGCACACTTGCGAGTCCGTGG EST sequence (targeted fragment marked with yellow): CCGAGCTACCCTTCCTGTTCGTGCAGTCGGTGCTTTTCGTGGTCATCGTCTACACCACCGTGCACTTCGAGTTCAACTCAGCAAAGGCGATGTGGTTCTGGCTCTACATGTGGCTCCAGACCATGTTCTTCACATTCTTCGGCATCGCTGCCATGAACCTGGCCCCGGTCATGCCCACCGCCATCGCCGGATCCAGCGGTCTCATCATGCTGTGGAACCTGTTCTGCGGCTTCCTCATCTCCCGCCCCAACATGAAGCCCTGGTATCTGTGGGCCTACTACGCCAACCCGCCCACGTGGACCATCTACGGCACCGCCGTGTCGCAGCTGGGCGACCTCACCGACACCTTCATCGAGCTGCCGGGCGGCGAGAGCATGAGCGTGGCGGAATACATCAAGGGCGCCTTCAGCTACGATTACGACATGCGCGGCTGGATCGTGCTGATCATGATTGGGTTCATCGTGGCGTGCCGCGCCGCCGCCTACTACGGCCTCATTCGGCTTAACTTCCAGAAGCGCTAAGATTTTACTAACAGGCCTGGTTTTGTTTGCATCTTGTGCCAAGCGGCACGGGAGTAGCACGGCATGCACTGACTGCGTCAAGTACCGGTACTTGCTACCGTCCGTGAACCTTACTGACTTGCATGTGTGCAAAGGGGGGGGGGGTGACCCACGATCATAAGGTTA | |||||||||
gi|14224623|gb|BG843439.1|BG843439 1024002G08.x2 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN TGCACACTTGCGAGTCCGTGG EST sequence (targeted fragment marked with yellow): TTTTTTATCGCATCGATCGTTACATCTGCATGTCCTAATATGTGCCCTCCACGGGCCTGTGAACTCTCCCTTCGCAGCAGCACATTCCGTTCCGCTCGTGCTACCCGTCGGCCAACCGAGTCATTGCCATGCAATACCTCACGTACAACTACATTTCTTGTACCCTTCGTCCATCTNTTGCCCACCGAATTGCATGTGTGCAGTGGCCCGGGGTGCCAAAATGTGGGGCTGCACCAAGACCTGACAGCCGCTCCCGCCCGACCGCCGACGCCCAATCCCAACTGTCCAGCAGCCCTTAGTGTACAACACGAATGCTTGCCCTCATGGGCACGCCGGAGCGCACCATCAACAAGCCATGAAATAAAATACATACTGCAATGCAGCTAAGAATTTAGCGCTGCTCAACACCAAAAACGTTCAAACTATAGGGGTGCCGCTATCCGCACCAGCCACTACCGACAGGCACGCCGCCAATACACGGGCATGTTGCGCGCCCTTGCTCGCAGTCCTCGTAAAATGGCATGTCCGTATTGCAAAAAACTGCGATTGCAAAGCCAAACCCCAACCCAACCTTGCAAGGATGCTCGGGTCGCGGCAGCCCTTGCTGCGTGGCTTGGCGCCTACCACGCACAAACATCCAGCCTAATCATTGCCCCGCGCAACACGAGGGCAATTGCTATGTAGAGCGAGTCACACGTGTGCTGGCACGCTAN | |||||||||
gi|9441781|gb|BE442267.1|BE442267 925016F04.x1 C. reinhardtii CC-2290, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, TGCACACTTGCGAGTCCGTGG EST sequence (targeted fragment marked with yellow): TTTTTTGGTGGCACTCACATTACACATGCACTTTCCATTTGCACTACACATGCTCTTTCCATCAAGTGCAGGGCCTTCTACTCCCGCGGGCGCGCGGGTGTGCAGCTGTTTTGTGCAGCACGACCACGCGAGTGCACGGCACTCCCGTACACCTGGGCTGGGCCTACCGGTAGCTATAGCGTGCAAGCGTGTAAAGCACATCCAGGGTTCCTTAGCTCCGGAATTTAGGCTACGCCACCTCGCGTCCGCCCGCCCCACACAGTCATAGGGACCACTTGGCACTTGGCAGCCTCGTGCGCGTACCCCTATCCACTGCTGCCATCACCACGCGTCCATCTTCCGTGTATACCGTAGTGTCGAGTGGCGCTGCCCCGCCAGACGTTGGTTCTCGTCGCGTTCCTGCCATGGCCGGTCCATCCGAGGCTAGTTGACACACACACTCCGACAGTCCCGCACCAGCCACACGCACACATACGCTACTGTCAAGCTGCATTGCCTCTGGCCCCCGACACCAGCATGATGACCACCGCCCGGCGCTTGCCTGCCTGTCGGACACAGTGCAACCATGCCACCAGAAACCGTGCCGTACC | |||||||||
gi|14241091|gb|BG859907.1|BG859907 1024066C05.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN TGCACACTTGCGAGTCCGTGG EST sequence (targeted fragment marked with yellow): AGGGGGAGGAGCGNGGCGANAGCGGAAGAACCGACAGAGCGAGAGAGAGAGGGGAAATGNGNATGACGGACTAACACCCAGAGGTGTCGGAGATTGGAGAGAGCCGGGAGCCCACCCCTGCGGAGTTGGTTTATTGTTTATTTTATTCTTGGATTAATATGTATTAGAAGAGCGAGAAGGGGGAGACAAGGAACGGCCTGTAAGGCCTGCCGACCGAGAGCGGAGCAGGCAAGCGAAAAAAGATGCAGAAGGGGAAGCAAGGAGAAAGGGGCAAGAGCGCGAAGGGGGCGGGACGCGGGACCGCGAGAGGGAGAACGGGAGAGGCACCAAAAAAGGAGGCGGGGCGCGGGGTGGGGCGGGGCAAGAGGAGGAGGAGGGCGAAGAAAAAGAAGCCGAGGGGTGACAGGAAGAAGAGGGAAACGACAGCAGACTCACCCGAGAAGGCACGAAAAGTCGCCTCCGCCGCAGAGAGGCGATAGGAGCGGACAAGCGCAAGAAAGCCGCAAAAGAGAAAAGCCAACCGAGAATGAGAGAAACAACGGCGAGACCACACATAAAGAGAAGACGACCAAGCACAACAGACACGAGAAGAAGAGAGACGACAGAGCAGGGTACGAGCGGGCGGCGCCACAAGCCTACGACAAACGACACATATGTACACGGACAACAGACAAATAGAGANCCAGGGCGCAGAAAAGAAGACGTGTCACATAAGAGAGAAGAGAAGAATAGAAAGGAGAGGAGAGGTGGCAAATAAGAGAGCAGACGGACACGCAAGTGTGCAAGGCCAGCAGCGGACGGCAATGCGAAGAGAGGACAGGGTACAGCAGGGCGCCCGTGAGCAAAGAAGCGCAGGAGCGACAGGAGGCACGAGAAGCGAACTATCTACTCAGACGAAAGACGGTCAAGCATGAAGACCGAATTAATAGACGACGGCGCGGAANACCACTAATGAGCAGACAGACGACGNGAGAAGACGAATAACAAGCAATGAGATAAATAACATCATAGATAGCANAGAGTTAACAGGAAGACAGAAGCAAGCGACGTCACAAGGATAAACGGAGTTAGCAGCGGGCAGACACACAAGAACGACAAGTGAGCATATCGCCAACATGCGTGTGANGCGCGAACAGCAGGATGGAAGCGCAGCACGCTAGGTAGAGGTGGATGGCGAAGAGTTNTACAGCAGATACCATATAGAACACGAGCAGAAACCGACAGAAAGATAGGACAAACTAAGAGGAAACAGAGGCAGATCAGAGACTAGAGCAACACGAAGCTATAGACAGACAAGGAGN | |||||||||
gi|23366259|gb|BU654079.1|BU654079 1112111B05.x1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II TGCACACTTGCGAGTCCGTGG EST sequence (targeted fragment marked with yellow): TTTTTTATCGCATCGATCGTTACATCTGCATGTCCTAATATGTGCCCTCCACGGGCCTGTGAACTCTCCCTTCGCAGCAGCACATTCCGTTCCGCTCGTGCTACCCGTCGGCCAACCGAGTCATTGCCATGCAATACCTCACGTACAACTACATTTCTTGTACCCTTCGTCCATCTTTGCCCACCGAATTGCATGTGTGCAGTGGCCCGGGGTGCCAAAATGTGGGGCTGCACCAAGACCTGACAGCCGCTCCCGCCCGACCGCCGACGCCCAATCCCAACTGTCCAGCAGCCCTTAGTGTACAACACGAATGCTTGCCCTTATGGGCACGCCGGAGCGCACCATTAACAAGCCATGAAATAAAATACATACTGCAATGCAGCTTAAAATTTAGCGCTGTTCAACACCAAA | |||||||||