| mature miRNA: TGCACTGCCTCCTCCCTGGGC species: Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211895871|gb|DV977621.2|DV977621 GQ0067.B3_P07 GQ006: Cambium and phloem from mature trees Picea glauca cDNA clone GQ0067_P07 TGCACTGCCTCCTCCCTGGGC EST sequence (targeted fragment marked with yellow): TCGTTGAAACAGCCTGGACCACGTGATGCACCCATGCAATGTTTTATCAAACGGGATCGGGCAACTTCTACATACCACTTGTTCCTGGGCCTAAGTCCTGCTTTGCTTGTTGAAAATGGAAAATTCCTCTTTGCTGCCAAAAAAGTTAGACATGCCACAAGCACAGATTATATAATTTCTTTGAGTGCCGAGGACTTTTCCCGAGCAAGTAACACATATGTGGGAAAATTGAGGTCAAACTTCTTGGGTACCAAGTTCACAATATATGATAGCCAACCTCCGCACAGTGGTGCAGTAGTCTTAACTAGCCGGCCAAGTCGGAGATTTTATTCCAAGCAAGTATCTCCAAGAGTACCCCCTGGCAGCTATAACATAGCAAACATTGTTTATGAACTCAATGTCCTTGGTACTAGAGGGCCAAGGAGGATGCAGTGCACAATGCATTCTATTCCAGTTTCTTCTATTCAGTCTGGAGGAAATGCTCCAACACCGACAGAATTTCCTCGTTCATTGGATGAATCATTTTCCTTACCCTTTTCCAAAGAACCCCTTGTAGATTTCAGCAGCTCTAGCTTATCAGAAATTCCAATCAACGTTGAGAGCAAAGATGTACCTCTTGTATTGAAAAATAAGGCACCAAGATGGCATGAGCAGTTGCAGTGTTGGTGCCTGAATTTCAGGGGACGTGTGACAGTGGCATCTGTAAAAAACTTTCAGCTCGTTGCTGCTGTGGAACCTTCGCAATTGGTGACACAAGCTGACCAGGACAAAGTTATCCTTCAGTTTGGGAAGATTGGAAAAGACATATTTACCATGGATTATCGCTACCCATTGTCTGCTTTTCAGGCCTTTGCTATATGCTTAAGCAGCTTTGACACAAAAC | |||||||||
gi|211880019|gb|CK442585.2|CK442585 GQ0013.BR.1_J04 GQ001: Male strobili developmental sequence Picea glauca cDNA clone GQ0013_J TGCACTGCCTCCTCCCTGGGC EST sequence (targeted fragment marked with yellow): GTGATCCAGGGGACGGTATTCATGTGAGCGAGAACCGGCCACTAACACCTCTATATAAACCCTCTCCATTGCTTACTCAAATCACAGCTGCTCCTATTCTCCAAGAATAGAATACTGATCTATCTTCGTCTTTTGTCAATTTTTAGTGTTAGTCTCGTCCCAGAAAATGGCCCAGCGAGGAGGCAGTGCAACGCTTTTGGTGGCGGGCATCCTCATCTTATTTGTGGTTGAATATGCACTTGTTGTTGAAGGGGCCACTTACGTAGTTGGGGATCACCAGGGGTGGAGTTTGCAAATCCGGTCCTCTCGCTGGAGCGTTGGGAAGAATTTCAAAGCTGGCGATACTCTGGTGTTCAATTACAACGCGGCACGACATAACCTGGTGGTGGTGAGCGCTAAAGGTTACAGCAGCTGCAGCACAGGAGGGTCCAGACTTTTCACCTCTGGCAGTGACATTATTACTCTAAAGAAGGGTGTCAACTACTTCATCTGCAGTTTTCCTGGCCACTGCTCTGCTGGGATGAAACTCGCTATCACGGCCGCTTAGACTCCTCAAATAGACACAGGTTATCACTGTGTTTTCTGAATAAAGGATTATCATGATCGTGC | |||||||||
gi|211899142|gb|DV970431.2|DV970431 GQ0081.BR.1_L21 GQ008: Cambium, phloem and bark of girdled saplings Picea glauca cDNA clone TGCACTGCCTCCTCCCTGGGC EST sequence (targeted fragment marked with yellow): CTCGATTAGAGATCCCGTCATATTGTTATTATTTCGAGGTGTCTCGTATCTGAGAAAAAGCAAGAATGGCCCAGGGAGGAGGCAGTGCGAATGTGCTGGTGGGGGGTCTGCTCCTCCTCCTTTGTGTTATTCAATGTGCGCATCTTGTTGAAGGGGCTACCTACGTCGTTGGGGGTCGCCAGGGCTGGAATTTGCAGAGCAAGACATGGACTGTTGGGAAAAGATTCAGGACCGGTGACACTCTGGTGTTTAATTACAATACATCAGTGCACAACGTGGTGATAGTGAACGCCGGAGCGTACAGGAGCTGTAGCACGGCAGGGTTTCGTCCTCTCACTTCTGGTAGCGACAAAGTTACTCTGAGTAGGGGCGTTAACTACTTCATCTGCGGTGTTCCCGGCCACTGCCCTGCCGGAATGAAGATCGCAGTTTCCGCAGCTTAAGTCCCACTCTGCTGATACACATACCATATAAATAATGCTGCGCTATAATCCGCGGTTTTCCCTCCATGCCTATATATATATATATAAGATGTACATCTCCATTTAGCAGCATCGCTGCTCAGTCTGCGTTGTGTATTGTGAATAGTGGTCTTCTTTGTTTACTGAGAATAAATATGTATGGTTAAGTTAAAAAA | |||||||||
gi|225919631|gb|GO371084.1|GO371084 GQ04101.SP6.r_L12 GQ041 - Shoot tip - Dormant (Normalized) Picea glauca cDNA clone GQ04101_L TGCACTGCCTCCTCCCTGGGC EST sequence (targeted fragment marked with yellow): TTGCATACCGTTAAAGCAATTAATGGAGTGTTAATTGCTTATTAAAGCAATTAATGGAGGATTGCGTGCATCAATTAAATTGACGTGTAATTTAGTGTGCAGTGACTTCTTGCTGCTAACTATTTTCATTGCTGATATGAACAATAATTAATCCTTGTTGGACGTTTTTTTGTCATTTGCATAGGCATTTCGGATGTCAGAACCCAGAAGTAATCCTTGAAGTAAGTCTTTTAATACAGATATGTCCAGCAAAACAGATCGATATGTATTGATTCTTTTGCAGTGAACTTTTATCAATTGTTAATCTGTCAACCAGTATTCTGAGTCTGTTTACAGGGTATTTTTATTAGTTGTGTTGATTTAGTAAATGATTGTTCACAAAGCAATATTCAGTGAATGATTGAATATAGCAACGTTGTACAAGATATCTACAATTGTTCTGAAGTAGATAAGGTCATATGTAATCTCCTGCTCTTGTCCACAGATTGCGCTTGTATAAGTGGAAGTGCCACTGGATCTGCCGTTGGCTAGGGTCGAGGCAGTGCAGGAAGAATGCGTTTTGAACTTAACATCCTCGCCCACGCTTTTTTTCATGATGCTCGTTTTGCTGCTTTATATTTTTTGTTGTTGTGTTATAAATGTTATTGGAGCTAGTCGGATTTTATATCTGAAGATGGCATTTATTATTTCCCTCCGCAGATGAATAATCCTTGTGCTGTAGGACATTCTGTCGTTATTCACGTTAGCATTTCGAATGGTAGAATCCAGAATTTCATCCTTGTAAAAAA | |||||||||
gi|211879034|gb|CO476909.2|CO476909 GQ0132.B3_I22 GQ013: Elongating ROOTS tips - saplings Picea glauca cDNA clone GQ0132_I22 5', TGCACTGCCTCCTCCCTGGGC EST sequence (targeted fragment marked with yellow): GTTTTCTCTGCGTTTCAGTGAGAGTTTGTAGTTGTGGTTGTGATTGTGAAGAGATTAAAATGGCCAAGGGAGGAGGCAGCGCAGGCCTGGTTTTGGCTTTGGGTTTGCTGATTTTGGTTGCCAGTCAATGTGCTTACGTTGAAGGGGCCAGGGCCATCTACAATGTTGGTGGCATTCAGGGATGGGGACCCTTCGCCTACTCTAGGTGGCTGGCCACGGTTCCCAAGTTAAAGGCCGGAGACCAACTGGTACTCCGATACAACCCCTCTGTGCACGATGTCATGGTTGTGGGCTACAACGGCTTCAAAAGCTGCCGTGTCACAGGACGCCCAAAACAATTTATGTCTGGAAAA | |||||||||
gi|211900942|gb|DV991270.2|DV991270 GQ0256.B7_F18 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ0256 TGCACTGCCTCCTCCCTGGGC EST sequence (targeted fragment marked with yellow): TTTCCTGTTGACCCTTTTGAATCGAGTCAGATCAGTGAGAAGACTTGGAGGGTTTTTGGGAAAACCTGCTGTACATTCCATCGACGAACAGATAGACGCCAAAGACGGCGAGAGCGATTCCAAGCCCTGGAGTCGCGTTACGTATGTTATTAGTGAGCATTGGATGCTTCCTCCACTCGTCCCTCCTCCTGAAAAATTCTCCCGTGTTGTTTAGTTTCCCACTCATTTTCCCAACCACGCGATCACCAACGAAGCCTGCACCTCCTCCTTCTCAACAAATGGATTGGATGTGTGATCGGATATTGAGAGTGCCCAGATCTCGTCTTATTACTATTTCGAGTGTTGAGTTCCAGAGAAACAGAATGGCCCAGGGAGGAGGCAGTGCGAGAGTTGTGAACAAGAATGTGCTGGTGGGGGGTCTGCTCCTGCTCCTCCTCTGTGTTCTTCAATGTGTGAGTGTTGTTGAAGGGGCTACCTACACAGTCGGGGGTCGCCAGGGGTGGGGTTTCCAGACCAACTCATGGACTGCTGGGAAAAGATTCAGGGCCGGTGACACTCTGGTGTTCAACTACAATCCTTCAGTGCACAACCTGGTAGTAGTGGGCGCCGGAGCGTACAGGAGCTGCAGCACGGGAGGGTCTCGGCCTCTCACTTCTGGTAGCGACAAAGTTACTCTGAGGAAGGGCGTTAACTACTTCATCTGCAGTATTCCCGGCCACTGCACTAGCGGAATGAAGATCGCTGTCCCTGCAACTTAGTCCCACATGCTTTACAGAATTTCTTGCCGGTATAAATAATGCCGCGCGCTATAATCCGCGGTTTTTCCTCCCTTCCTATATATATTTATAGATAGAAGATGTATTTCTGGATTTAGCAGAATAGCTGCTGAGACTCTGTAGTGTTGTGTGAACTGGGATCTTGCTTGTTCTGTTTTCTGAGAATAATAATTGGCCATCTTATTATTAAACAAAAAA | |||||||||