| mature miRNA: TGCACTGCCTCTTCCCTGGC species: Fragaria vesca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|158369338|gb|EX677723.1|EX677723 JS5BE88JG Draught stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesca cDNA TGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): CCGCGCGGCGCCTTCTCGTCTTCGCCTTCCAGGATGTGGATGGTTGAGGGACTGAACATTTAGCATATGGCTTCAAGTGTGGTTGTATTTAATTCTTATGAGATGGGTTGCATGTTGAAATTTTCTGTACTTTGCTGGGATTTGGTGATTTCTGTTATGAAGGATGTAGTTGGTTTGGTTTAACATCATGGATATTGGGTGTGGTTGTAATGTGGGTGTGGCTGTGATGTGGACAGGGAGGAGGCAGTGGTGGTGGTGGTGGTGGTGTTTTTCCCTCAAATCAGTGGAGCTAGGTCATAATAAGAAATTAAACATAAGTATGGACAGCAGGAGCCTCAGCAGGAGCAGGAGCAGGAGCAGAAGCAGGAGCAGGAGCCCTACGGATCGTAAGATGCGTACTGATCGCTTTTCCTATCGCGATGCACCTTACAGGAGAGATGGTGGTCGTCGGGGTGGTGGTTTCAGCCGAGACAATCTATGCAAGAATTGCAAAAGACCTGGCCATTTTGCTAGAGAATGCCCTAATGTTGCAATTTGTCACAACTGTAGTCTTCCCGGGCACATTGCCTCAGAGTGTACCACAAAGTCACTATGTTGGAATTGCCGCGAACCTGGTCACATGGCTAGCAACTGTCCAAATGAGGGCATCTGCCACACCTGTGGCAAGGCTGGACACCGTGCTAGAGACTGCACTGCTGCCCCAATGCCGCCTGGGGACTTGAGGTTGTGCAACAATTGCTACAA | |||||||||
gi|89547396|gb|DY670239.1|DY670239 STRCI25JX cold-stressed Fragaria vesca seedlings cDNA library Fragaria vesca cDNA clone STRCI TGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): AAATGAATTGGTTATATCTTTCACAGGGAAACTCCTTGAGATATTACATCACTGTCTTCCTTCAACAATAGCGGACCTTGATCATGCTCTTAGTGATGGTATGAATAGGGGTGGAAGACAAGCGGTGGAGTGGAGAGTGTCAATTGCTAAACACTTTATTGAAGAGTGGGAATGGCGGTTGTCAATTTTGCAGCGTCTTCTTCCATTATCTGAACGTCAGTGGAAATGGAAGGAAGCATTGACAGTATTACGAGCTGCACCATCTAAGCTACTTAACCTTTGCATGCAAAGGGCAAAGTATGACATTGGGGAAGAAGCAGTGCATCGATTCTCATTGTCTGCAGAAGATAGAGCTACACTTGAATTAGCTGAATGGGTTGATGGTGCTGTCAGAAGACAGTCGGTAGAAGATGTAGTCTCTCGTGCTGCTGATGATGGAACTTCTACCGTACATGATCTGGATTTTTCATCTTTACGATCTCAGTTAGGTCCTTTGGCTGCAATTCTTCTTTGTATTGATGTTGCTGCAACTTCGGCACGGTCTGCAAAGATGTCCCAGCAGCTTTTGGATCAGGCTCAAGTTATGCTGTCTGAGATATATCCAGGAGTTTCTCCAAAGATGGGCTCCACGTACTGGGATCAGATTCTTGAAGTGGGAGTTATTTCTGTTCTAAAAAGAATCCTTAAGCGTTTACATGAGTTCTTGGATCAGATGATCCTCCAGCCCTTCAGCCACTCTGTCTGGGGAGATGTTAATCTCCTCACCAAAGGATTC | |||||||||
gi|158369533|gb|EX677918.1|EX677918 JS5BH86JG Draught stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesca cDNA TGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TGAAAACAGATCTTATTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGAGTAGACAAGCTGATCGATATGGCTTTGGGAAGAGGCAGTGCGATGGCGGTGCTTGTGGTGTTTGTGCTGGTGGTGCTAAGCTCGGAGTGGGCCGATGCGGCAACCTACACTGTTGGAGACAAACGTGGTTGGACGTTCAACGTTGCTGGGTGGCCGAAAGGAAAGACTTTCCGAGCCGGTGACACACTTGTTTTCAATTATGGGTCTGCTGCACACAATGTTGTAGCTGTGAACAAAGTGGGGTACCAGAAATGTAGCACAACTCCAGGAAATGCCAGAGTGTATCAGACTGGGAATGATAAAATCAGACTTGCCAAAGGACAGAACTTCTTCATCTGCAATTTCCCTGGACACTGCCAATCTGGAATGCAAGTTGCCATCACTGCAGTCTAGAGATCGATAATCATCTGGAAACAAAAGCTAGAGCTAAGCTAACAATACCTGGCCTATACTAGCTAGGATTCAATATGTTATCGATCATATCCTACGTATCTTAATGTATCCACTCTATGTACTAAGCTGGATATATGTGTGTTAAGGGTCGATATATAGACTCATTACTACTTTTGTGGATGAAGAAATAATATTGGGGGAGACGTAATATGAGAATTAAGG | |||||||||
gi|158349799|gb|EX658195.1|EX658195 JS1AJ57JG Salt stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesca cDNA cl TGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): CAAAGTTCTAAGCTCCCAGAGCCTAGCTACACAGATCATCGGTCACCAATGGAGGTTCTCAACAGCTCCATTTTCCTTAGGCGTTTGCCTTCTCTTGGCTTCATCGACAATGTCCTCCGCAGAACCCAAAACCCACAACCACGAATTTGTTATTCAAGCAACACCAGTGAAGAGGCTGTGCAAAACCCACAAAAGCATCACCGTGAACGGCCAGTTTCCCGGACCAACCTTGGAAGTTAACAACGGCGACACTCTCGTCGTCAAGGTCACGAACAAAGCTCGATATAACGTGACCATTCACTGGCATGGAATTCGCCAGATGAGGACTGGATGGGCAGATGGGCCGGAATTTGTAACTCAGTGCCCGATTAGACCTGGAGGGAGCTACACTTATCGGTTTACGATTCAAGGTCAAGAAGGAACACTGTGGTGGCATGCACACAGCTCTTGGCTTAGAGCCACTGTTTATGGAGCCCTTATTATTCATCCTAAACAAGGAGACTCGTATCCGTTCACTAAACCAAAGCGCGAGCAAACCCTTCTTCTGGGTGAGTGGTGGGATGCAAACCCTATCGACGTCCTGAGGCAGGCGACTCGAACCGGAGCTGCTCCGAATGTTTCTTATGCTTACACCATCAATGGTCAACCTGGTGATCTTTACAAGTGCTCGAGCAAAGACACAGTGATAGTTCCCATAAACTCCGGCGAGACCAACCTCCTCCGTGTCGTCAACGCCGCCCTTAACCAACAACTTTTCTTCGCCGTGGCCAACCATAAACTCACCGTTGTCAGTGCCGATGCCTCGTACACAAAGCCTTTCACCACGACCACCCTCATGCTCGGCCCCGGCCAAACCACTGACGTTTTAATAACCGGCGACCAGCCACCTTCCCGGTACTACATGGCTGCGCGTGCCTATTTCAGCGCACAAAACGCACAGTTCGACAACACCACCACCACG | |||||||||
gi|158374151|gb|EX682536.1|EX682536 JS7AO04JG Salt and heat stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesc TGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): CTAAACTCTCTCATAGCTAGAAGCTCAAAATGGCAGGCATGGGAGCCAGAATTGTGGGTATAGTCCTTGTTTTTGGCATGGTCATGATGCCAAGCTTGGCCAAAGACTACACTGTTGGAGACTCCTCTGGCTGGGCTACTGGTGTTGATTACACCACTTGGACGAGTGACAAGACCTTCGCAGTCGGCGATAACCTAGTGTTCAACTATGGAAGTGGGCACACGGTGGATGAAGTGAGTGGTACTGACTACAAGAGTTGCACCACAGGCAACTCAATCACTAGTGACAGCAGTGGCGCCACCACCATTCCTCTCAAGACTGCCGGGACACATAACTTCATTTGTGGCATTGTTGGGCATTGTGGAATGGGCATGAAGCTCTCTGTGACCGTTGGATCAGGATCAACCACCACCACACCAGCTGCCAAGGGTGCAACCACACCGCCTTCCACAGACGGTAGCAACACCACGGAAACCACTCCAGCAGTGACCACACCCACAACCACATCATCCACTGGTCTAGGAACTAGTCTCTCTAGCTCTCCTATTATGGCTTTGATGACTATTGCTGGGGTTGTTCTGAGTGTGTTGGTGCTTTCATAACTTGGGTAGTGGAGGCTTAGTTGTCTTGCCAGGACAGAGGCAGTGCTTTGTAATTTCTTCTTTTTAATTTGCAGTACCTTCTGAGTTTATTTAAATTCTATTGAATATGTATGAGTAG | |||||||||
gi|158354569|gb|EX662961.1|EX662961 JS1C358JG Salt stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesca cDNA cl TGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): ATTTCTTCATATTTTGAAAGAGATGAACTCTCAGGGAAGAGGCAGTGCCAGATTTACTGTTGTGCAGGTGGTTGCAGTTCTACTATGCCTCATGGCAGTTCAGTATGTTGATGCAGCTACCTACACAGTTGGAGACTCCGGTGGATGGAGCTTCAATACTGGTAAATGGCCCAACGGAAAGCAATTCCGAGCCGGTGATGTTCTAATTTTCAACTATGACTCTACACTTCACAATGTGGTAGCTGTGGGGAGGGGTGGTTATAGCAGCTGCACAACCCCTAGAGGTGCCAAGGTTCTGACATCGGGGAATGATCGGGTGAAGCTCGCCAAAGGACAGAACTACTTCATTTGCAACTTTCCAGGCCACTGCGAGTCCGGGATGAAGGTTGCCATCAATGCTGTCTAATGGTCGATTTATGTACGTACGCTAGCGTTTATTAGTCTAATATATCAATCCGCAATAAGAAAAATGTCACGGCCGGTTAGTCGGACATAATAGAACCGTGGACATATAAGACGGTTTTATGTATTACATATTGAATATTTGATTGTGAAACTTAACGC | |||||||||
gi|89544465|gb|DY668760.1|DY668760 STRB732JX cold-stressed Fragaria vesca seedlings cDNA library Fragaria vesca cDNA clone STRB7 TGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): CGATAGACCTAATGGCGAGCAGCGGTGGCGGCGACGACGACGCCGATGCGGTGCTCAGCGACGTGGAGGGAGACGATCCAGTCCCGATCGTGATCAAGAATCCCTCGCCGGAGCAAATCTCCGCCGACCGGTTCCGCGAGCTCCTCGCCGAGCTGGATCGCGAGCGGCACGCTCGCGAGGCGGTGGAGAATTCCAAGTCGGAGCTGCAGGTCCAGTTCGGCCGGTTGAAGGCTCTGGCGCACGAGGCGATTAAGAAGCGCGACGAGTGGGGGCGGCAGAGAGACGACGCCTTGCGCGAGAAGGAGGAGCTTTCCAGAACGAACGAGAAGGTGACGGCGGAGCTGGCGGAGGCTAACAGAGCTAAGGACGAGGCTGTGCAGCAGAAGGAGGAGATTTCGAGGCAGTTAGACGACGTCGTTAAGGAGAAAGATGGATTGAGAGCTGAGATTGGGAATTCGACGCATATGCTCATGTCTGGGATTGATAAGATTTCAGGAAAGGTTAGGAATTTCAAGAATTTCGCGGCCGGGGGACTGCCGCGGTCGAATAAGTACACCGCCGGACTGCCGGCGGTGGCTTACGGTGTTATAAAGAGGACTAATGAGATTGTGGAAGAGCTTGTTAGACAGGTTGAGGCCACTGCCAAGTCTAGGAACGAAACTAGGGAGCAGATGGATCAGAGGAACTATGAGATTGCTATTGAGATTTCGCAGCTGGAGGCT | |||||||||
gi|57896315|gb|CX662072.1|CX662072 V01018H07_559588 Fragaria vesca heat stressed seedlings cDNA library in pCMV-SPORT 6.1 Fragar TGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): GAACAACCATTAGAAAGAGGACCGACTTGTTCTAGGGTTCCTTCTCATTTTCTCTCTCCCTTTCACTCTAACCGCACCTTCTCAGCCCTCGTCTCCGCCGCGACATTCCTCGCCGGCTTCTCGGAAACGCCGTGACCTTAGCCGCGCGGCGCCTTCTCGTCTTCGCCTTCCAGGGAGGAGGCAGTGGTGGTGGTGGTGGTGGTGTTTTTCCCTCAAATCAGTGGAGCTAGGTCATAATAAGAAATTAAACATAAGTATGGACAGCAGGAGCCTCAGCAGGAGCAGGAGCAGGAGCAGAAGCAGGAGCAGGAGCCCTACGGATCGTAAGATGCGTACTGATCGCTTTTCCTATCGCGATGCACCTTACAGGAGAGATGGTGGTCGTCGGGGTGGTGGTTTCAGCCGAGACAATCTATGCAAGAATTGCAAAAGACCTGGCCATTTTGCTAGAGAATGCCCTAATGTTGCAATTTGTCACAACTGTAGTCTTCCCGGGCACATTGCCTCAGAGTGTACCACAAAGTCACTATGTTGGAATTGCCGCGAACCTGGTCACATGGCTAGCAACTGTCCAAATGAGGGCATCTGCCACACCTGTGGCAAGGCTGGACACCGTGCTAGAGACTGCACTGCTGCCCCAATGCCGCCTGGGGACTTGAGGTTGTGCAACAATTGCTACAAGCAGGGTCATATTGCAGTTGACTGCACAAATGAGAAGGCATGCAACAACTGTCGGAAGACAGGTCACCTGGCTCGTGATTGCCCAAATGAACCAATCTGTAACAATTGCAATGTATCTGGGCATGTGGCCAGGCAGTGCCCCAGAG | |||||||||