| mature miRNA: TGCACTGCCTCTTCCCTGGCT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52387152|gb|CV232037.1|CV232037 WS0196.B21_F11 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0196_F11 3', mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): CCTAATTCTTGTGCTTGCCGCTCCAGCAGCTTATGCTGCTACAACGTACACTGTTGGTGACTCGTCCGGCTGGACCACGTTAGGAGATTACACCACTTGGGTTAGTGGTAAAACATTCACTGTTGGTGACTCTCTTCTGTTCAAATATAGCTCCACACACAGTGTGGCTGAAGTATCGAAAGACGACTACGATAGTTGCAGCACAAGTAATCTCGGGAAAACCTATACTGATGGAAGCTCAACAGTACTCTTGTCCACGGCTGGTCCAATGTACTTCATTTGTTCCACACCTGGTCACTGTTCCGGCGGCATGAAGCTAGCAATCACCGTTGCCGCAGCCAGTGGCACCCCAAGTACCCCCACCACACCTGCCCCTCCAGTCGACGATGGTTCAACCACTCCATCAACTACATCTGGCTCGTCACCTACAGCCCCCACCGGCACACCACCACCACCGTCGAAGAGTGATAATGGAGCCACCAGCATTTTATATAACATGATGCTTGGTGTCTTTCTTGTATTCGGAACAACTGTTGCATTGATGGGCCAGTGAAGAGGCAGTGCCATATTATCGTGTTGTTAATTAATGTCCTTGTTATCATTGGGTTGAAGCTGGTTTTTTTCAATTTTTATTGGATGAGGGATGTGAAATTTATGTTTATATATATTATGTTATTGAATAATTAATTTTTATTTATAAGCTCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|24059100|gb|BU868453.1|BU868453 M116A08 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): GGAACCCAAATACCTTCTTCTCTTCTCTTCTTTTCTCCCGGAAAATGGCCGGTTTAATTTCAAGATCAGTTCCTTGTGCAATCCTAGTAGTCTTGTGCACGTGGTGCCCATTTTGGCTAAAGATCACACTGTAGGAGATAGTTCAGGCTGGGCAATTGGTATGGATTATAGCACCTGGACTAGTGGCAAGACCTTTTCAGTTGGCGACAGCCTTGTGTTTAACTACGGAGGAGGCCACACGGTAGATGAAGTGAGAGCCAGTGACTACAGCACATGCACTACAGGCAATGCAATCACTTCAGATAGCAGTGGTGCTACCACAATAGCCCTCAAGACTGCCGGAACTCATTATTTCATTTGTGGTGTTCCTGGCCACTGTGGGAGTGGCATGAAGGTTGCAGTCACTGTTGCAGCAGCAGGATCGAGCACAAGTCCCTCCTCCGGAACTCCATCTTCTGATGGCACTACCACTTCTCCGGCCGGTAGTAACGTCACCAATTACAAGCCTTCATCCAACAACGTACCCGATTCATCCTTAGGGATCAATATTTCCCCATTTGTGGCTTTAGCCGGTACTTGTGTCGCCGTTTTTGTGATGGTTTTCTCATGAATTGCCAGGGTAGAGGCAGTGCTCTGCTAGATCCCTCTTTTTTTTTTTTTTTGGTTCTTGCTTTTCCTGAAGCTCTGCTTGTATTCAGGATTATTA | |||||||||