miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGCACTGCCTCTTCCCTGGCT
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|52528464|gb|CV275489.1|CV275489 WS0176.B21_K03 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides cDNA clone WS0176_K03 3', 

TGCACTGCCTCTTCCCTGGCT
 ||||||||||||| |||||.
CCGTGACGGAGAAGTGACCGG

EST sequence (targeted fragment marked with yellow):
CTGTATTCTAGCTAGAGATTGTTAAGGCTTTCAGACATGGCCAATATTGCATCTGCTCTCCTAATTCTTGTGCTTGCCGCTCCAGCAGCTTATGCTGCTACAACGTACACTGTTGGTGACTCGTCCGGCTGGACCACGTTAGGAGATTACACCACTTGGGTTAGTGGTAAAACATTCACTGTTGGTGACTCTCTTCTGTTCAAATATAGCTCCACACACAGTGTGGCTGAAGTATCGAAAGACGACTACGATAGTTGCAGCACAAGTAATCTCGGGAAAACCTATACTGATGGAAGCTCAACAGTACTCTTGTCCACGGCTGGTCCAATGTACTTCATTTGTTCCACACCTGGTCACTGTTCCGGCGGCATGAAGCTAGCAATCACCGTTGCCGCAGCCAGTGGCACCCCAAGTACCCCCACCACACCTGCCCCTCCAGTCGACGATGGTTCAACCACTCCATCAACTACATCTGGCTCGTCACCTACAGCCCCCACCGGCACACCACCACCACCGTCGAAGAGTGATAATGGAGCCACCAGCATTTTATATAACATGATGCTTGGTGTCTTTCTTGTATTCGGAACAACTGTTGCATTGATGGGCCAGTGAAGAGGCAGTGCCATATTATCGTGTTGTTAATTAATGTCCTTGTTATCATTGGGTTGAAGCTGGTTTTTTTCAATTTTTATTGGATGAGGGATGTGAAATTTATGTTTATATATATTATGTTATTGAATAATTAATTTTTATTTATAAGATGCAAAAAAAAAAAAAAAAAA


gi|52528191|gb|CV275216.1|CV275216 WS0175.B21_M02 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides cDNA clone WS0175_M02 3', 

TGCACTGCCTCTTCCCTGGCT
 ||||||| |||||||||||
CCGTGACGTAGAAGGGACCGC

EST sequence (targeted fragment marked with yellow):
GCTGAAATGGCTCGCCAGGGAAGATGCAGTGCCCTTCTTGTCATTCTATCACTCCAATTCAAAATCGCCATCGCCAAGGCAGCTACTTTCACCGTCGGTGACACCTCAGGCTGGACTTTCAACATCCAGAGTTGGACAGATGGGAAAAAGTTCAAGGCCGGCGACAGCCTGATTTTCAACTACGATCCTTCATTGCATGATGTGGCCACTGTAGATGTCGATGGCTACGATGGCTGCACAGTTTCTCCGAGCTCCAGCACTTACACAAGTGGAAAAGATACGATCAAGCTGAAGGAGGGACAAAACTATTTTATATGCAGTCTCCCCAGTCACTGTGACTGGGGGTTGAAAATTGCAGTCAATGCTTCCGCCTAGATAGAAAATGAATGTTGATGAATAAAAATATTATGGTGGCTTTCAGCTCATTGCAGCGCCGCCCCCTGTTCTTCATCTGAATCTTGAACGTGTAATTTGAGGTGAAATGAGTTGCGAAAAAAAAAAAAAAAAAA


gi|30233320|gb|CB239724.1|CB239724 RSH15G10 two-month-old roots from clone 'Beaupre' grown for 19 days under restricted irrigati 

TGCACTGCCTCTTCCCTGGCT
.||||||| |||||||||||
GCGTGACGTAGAAGGGACCGC

EST sequence (targeted fragment marked with yellow):
TACGGCCGGGGACCCGCGTTCTCTTTCAAGAATCAATTAATTCTTGGTAATTGCTGAAATGGCTCGCCAGGGAAGATGCAGTGCGATCGGCGTAGTTCTGGCTAGTACCCTTCTTGTCATTCTATCACTCCAATTCAAGATCGCCATCACCAAGGCAGCTACTTTCACCGTCGGTGACACCTCAGGCTGGACTTTCAACATCCAGAGTTGGACAGATGGGAAAAAGTTCAAGGCCGGCGACAGCCTGATTTTCAACTACGATCCTTCATTGCATGATGTGGCCACTGTAGATGTCGATGGCTACGATGGCTGCACACTTTCTCCGAGCTCCAGCACTTACACAAGTGGAAAAGATACGATCAAGCTGAAGGAGGGACAAAACTATTTTATATGCAGTCTCCCCAGTCACTGTGACTGGGGGTTGAAAATTGCAGTCAATGCTTCCGCCTAGATAGAAATTGAATGTTGATGAATAAAAATATTATGGTGGCTTTCAGCTCATTGCAGCGCCGCCCCCTGTTCTTCATCTGAATCTTGAACGTGTAATNTGANGTGAATTGAGTTCTGA


gi|52530109|gb|CV277134.1|CV277134 WS0142.B21_M01 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides cDNA clone WS0142_M01 3', 

TGCACTGCCTCTTCCCTGGCT
 |||||| ||||| ||||||.
TCGTGACCGAGAAAGGACCGG

EST sequence (targeted fragment marked with yellow):
CCAGTGGGATTTACTCCACCGGAGTTGGACCCAAGTACCCCATCACCAATTTTTGGTGGGAGCACCGGTGGACTGTTGAGGAAAGCCCAGGTAGAGGAGTTTTATGTGATCACTTGGGACTCCCCCCAAGGAACAAATATTTGAAATGCCAACTGGGGGTGCAGCCCATTATGAGGGAAGGCCCTAACTTGCTCAAGTTGGCCAGGAAAGAGCCAGTGCTTGGCCCTTGGAACTAGGCTAAGGTCTAAGTACAAGATCAAGTACCAGTTTTACAGGGTGTTCCCCTAATGGAGAGGTTCAGTACTTGCATCCCAAGGATGGTGTCTACCCTGAGAAGGTGAACCCGGGGCGCCTAAGGTGTCGGCCAGAATTTCAGGTCTATCGGAAAGAATGCTAGCCCTAATTGAGGTCAAGTTCACCGGCTAAGCAAGTTTATGACTTGTGATCTGGTAACATCATGTGTTTGTGATTACGTGAATATTTGTTGTAATTGTATCTCTTCTCAGGAAACTATAAGAGAAGCAAAACCTGTCTTGTGCGTGCACGTTTCTCTTTCTTTTTCATATGCTTATATAATATCTACATCATTTTCTATGAATATAGCAATATAGAATCTAAAAAAAAAAAAAAAAAACTTCGAGGGGGGGCCCCGGTACCCCATTCGCCCC


gi|73935800|gb|DT519110.1|DT519110 WS02440.B21_E18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02440_E1 

TGCACTGCCTCTTCCCTGGCT
|||||||||||||| |||||.
ACGTGACGGAGAAGTGACCGG

EST sequence (targeted fragment marked with yellow):
GGAAGCTTAACAGTATCCTTGTTCAAGGTTGGTCCAATGTACTTCATTTGTCCCACATCTGGTCATTGTTCCGGCGGCATGAAGCTAGCAATTCCCGTTGTGGCAGCCAGTGGCACCCCAAGTACCCCCACCACACCTCCAGTCGACGATGGTTCAACCACTCCACCAACTACATCTGGCTCGCCACCTACAACCCCATCAACCACCGTCACACCACCACCACCATCGAAGAGTAATAATGGAGCCACCAGCATTTTATATAACATGATGCTTGGTGTCTTTCTTGTATTCGGAACAACTGTTGCATTGATGGGCCAGTGAAGAGGCAGTGCATGCCATATTATCGTTGTTAATTAATGTCCTTGTTATCATTGGGTTGAAGCTGGTTTTTTTCAATTTTTATTGGATGAGGGATGTGAAATTTATGTTTATATATATTATGTTATTGAATAATTAATTTTTAAAAAAAAAAAAAAAAAA