miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGCACTGCCTCTTCCCTGGCT
species: Prunus persica
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|209177806|gb|FC867363.1|FC867363 PPN026A05-T7 PPN Prunus persica cDNA clone PPN026A05, mRNA sequence 

TGCACTGCCTCTTCCCTGGCT
| ||||||||||| |||.||.
AGGTGACGGAGAAAGGATCGG

EST sequence (targeted fragment marked with yellow):
AAGTCCAGAGAGAGAAACACATTCAGAGATGGATATGGGCATGAGCTTGAGTTTTTCTCTTTTCCTTGTGCTTATTGTATAATGAGCAAAGCTTTTATTTTCTTCTTCTCTGAAGAAGATGGCTCTGCAAGAAGAACCCCAAGAGCTACAGAACCCTCCAATGGCTTTTGACGCTTTGTTTTGTGAAGAAGGTCTTGAGGAAGATTTGGGAGACAATGGTATTGAGGAAGAGAGTGAGGGTTGTGTTGGGAATATGGAAAAGCAGTCAACTTTCCCTCTGGTTTTGCTAGAAAATGACCTCTTTTGGGAAGATGATGAACTTGCCTCTCTAATCTCCTAAGAGGAACAGACCCATGTGTGTTTCAGTGGTTCAATCTCAGATGGGCCTTTAATGGCGGCTAGGAAAGAGGCAGTGGAGTGGATTTTGAGTGTTAAGGCACACTATGGGCTCTCTTCTTTGACTACTGTTTTAGCTGTGAACTACTTTGATAGGTTCATTGCCAGCCTACGGTTTCAGAGGGACAAGCCTTGGATGAGTCAGCTCGCTGCCGTCGCTTGTGTGTCTTTGGCTGCCATAGTGGAAGAGATCCATGTGCCCCTTCTC


gi|89480064|gb|DY635858.1|DY635858 PU1_plate56_E13 PU1 Prunus persica cDNA similar to similar to selenium-binding protein, putat 

TGCACTGCCTCTTCCCTGGCT
||| |||||||||||||. ||
ACGGGACGGAGAAGGGAT-GA

EST sequence (targeted fragment marked with yellow):
TGGAAAGAGCCCCTTTTCCGTTCTTCTTTTTCTTAATTTTCATCATCTTCTTCTTTCTTCATCTTATCACAGCCTTTTAGAAAGAGAGTAGATATAGGAGAAAGAGATGGCTACAGATGTGGCGGTTCCGCAACATGGGACAGTAGGGAAGAGGCAGGGCAATGAAGCAGCATGCTGCAAAACTGGGCCAGGGTACGCCACCCCACTGGACGCCATGTCTGGTCCAAAAGAGGCTCTCATCTATGTCACTGCCGTTTACTCAGGAACAGGAATACAGAAGCCTGATTATCTCGCCACAGTCGACGTAGATCCAAGTTCTCCTACTTATTCGAAAGTCATCCACAGGCTGCCTGTGCCTTATATTGGTGATGAACTGCATCATACGGGCTGGAACTCATGCAGCTCTTGCTATGGAGATCCATCTGCACAACGTCGTTTCTTGGTCCTACCTGGATTAATATCTGGTCGTATATATGCGATAGACACAAAAACAAATCCGAAGGCTCCCTCTTTGCATAAAGTTGTTGAACCTGAAGAGATTATACAGAAGACTGGATTGGCATATCCACACACATCCCATTGCCTTGCTTCTGGCGATTTATTGGTTCATGCCTGGAGATAAGATGGAGTGCTGCAGAAGTGGGATTCTCTCTG


gi|89487934|gb|DY643728.1|DY643728 PU3_plate33_D07 PU3 Prunus persica cDNA similar to expressed mRNA inferred from (AB023041) un 

TGCACTGCCTCTTCCCTGGCT
||| |||||||| |||| ||.
ACGAGACGGAGACGGGAACGG

EST sequence (targeted fragment marked with yellow):
CGAGAGACAGGCAGATAGATAGAGAGAGGGGGAGAGAGAGAGAGAGATAAAACTCAAAACTTGATATTGTCAACAGTCAACACGAACAGCTCATCAAATTCTCTTTAGAAAAGATAGTGGGTTGGTGATTTGAAGAAAGAGGCAAGGGCAGAGGCAGAGCATAATTTATGTAGCTGGGTATTCCGGTTATGTCTATCGCCGGCGGCTGGAGGCTTTTGCACTCTTCTCTGGTGGTGATTTTGGTCATTTCTGTGTTACAGATTTGGGTCTGCTGTGACTGCAAAGCAGGCGCAATACGGGTTTTCCCAGGACACACAAATGCGTTATCAAAGGGGGAGGCAGAGAGCAGCAACACGATGCAGAGCAAGAGCAACAGAAGCAGAGAGGCCCTGTTCCATAAGTACTTCGGTGGCAGTGTCAGAGCTTCTAAATTCAACAAAACAGAGCAAGGGTATGAAGACAGCAAACGAAGAGTGCCCAGTTGCCCAGATCAACTCCACAACTAGTAAAATTATTCATTTTCTCTCTTCTTTTCTTGGGAAATTTTGTTGAATTATAACCAAAATACCCACGTTTTTCTCATTATGTCTGTGGAAATTTGATGGCCTTTTCTTGCTTCTGTATTCATGAGTGGGAAACCGGGGTAT