| mature miRNA: TGCACTGCCTCTTCCCTGGCT species: Saccharum hybrid cultivar SP70-1143 database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|35266807|gb|CA216984.1|CA216984 SCSFAD1122B02.g AD1 Saccharum hybrid cultivar SP70-1143 cDNA clone SCSFAD1122B02 5', mRNA seq TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): AACGGCCACCACCAGGTTTCCAGGTTTGGTATTTACAGAGGCACAGGTAAAAAGAGCGAGAGATAGAAGATGGGTATGGTTGGAGACAGGGATGAGGCAGAGCATGGGATGGGGCCATCAACAAAATTTCCAATTTCTGTCCTCCGCTAGGCCGCTACTGCATTTATGTTTGCTTGCTCACAAAACGGAGGGATTTGTGAGAGTTATCAGGCAGAAAGAACAAAGAAGGTGCCTCCCTGGTGAAGTGGTGATGGCCTGACCTGAGAGGGCTGAGAGCTCAGCTGGTGTCCTGGTGTTGTTGCTTCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCACCGTTGCCCTTGCCCATCATCTCTCTCGTTATGCTCTTGTATGTTTTTTTGCCTGCATTCTTTTCTCAGTAGCAGTATTACTTTTAGTTGTCTTTACAATAGTTCTAATAAAAACTGCAGGTCTGCAGCAGATTTGCAATAGTTCTAATAAAAACTAAGCACTGTACGACATTTATTCCACCACGACGGGCTACCGTGGCAAATGATCCTTTGTTTTCTGCTAACCATACTCAAGAATCTTCTGTCTAGAGTGTACTTTCAGGAAGGGNANANAAAAATATTCGGTCTGCATCTTCGGGGAGCCTGCATGGACAATNGGACATCACGTCGCTCCTATTATCAC | |||||||||
gi|34958282|gb|CA104975.1|CA104975 SCJFHR1C03C11.g HR1 Saccharum hybrid cultivar SP70-1143 cDNA clone SCJFHR1C03C11 5', mRNA seq TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): TGGCAATGGCAGCGGCCACCACCAGGTTTCCAGGTTTGGTATAAACAGAGACACAGGTAAAAAGAGCGAGAGATAGAAGATGGGTATGGTTGGAGACAGGGATGAGGCAGAGCATGGGATGAGGCCATCAACAAAATTTCCAATTTCTGTCCTCCGCTAGGCCGCTACTGCATTTCTGTTTGCTTGCTCACAAAACGGAGGGATTTGTGAGAGTTATCAGGCAGAAAGAACAAAGAAGGTGCCTCCCTGGTGAAGTGGTGATGGCCTGACCTGAGACGGCTGAGAGCTCAGCTGGTGTCCTGTTGTTGCTTCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCACCGTTGCCCTTGCCCATCATCTCTCTCGTTATGCTCTTGTATGTTTTTTGCCTGCATTCTTTTCTCAGTAGCAGTATTACTTTTAGTTGTCTTTACAATAGTTCTAATAAAAACTGCAGGTCTGCAGCAGATTTGCAATAGTTCTAATAAAAACTAAGCACTGTACGACATTTATTCCACCACGACGGGCTACCGTGGCAAATTATCCCTTGTTTTCTGCTAACCAAANTCAAGAATCTTCTGTCTACAGTGTACTTTCAGGAAGGGGAAAAAAATATTCGGTCTGCATCTTCGGGGAACCTGCATGGACCATTGGACATCACGTCGCTCTTATTATCCACAGAGCTCGACGCTCAAGGACTTAGG | |||||||||
gi|34920061|gb|CA068537.1|CA068537 SCRUAD1062H12.b AD1 Saccharum hybrid cultivar SP70-1143 cDNA clone SCRUAD1062H12 3', mRNA seq TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): CCACGGGTGCCGCACAACTCCCCGCTAACGTCTCCGGGGGCCGCTCTGGGGCCACCCGGGCGGTACCCCCGCCGCAGCGCGGCCCCTTGTCGGCCCCTTTNCCGCCTGCGTGGCCCCGGGGTTAGAGCCCCCGGTTTTGCTCCGTGGTGCAGTGGGGGTTGTGGGCCCCTGGCCCTTCTCTTAGCCCGGGGCTCGAGCTGGGGGGACCCGGGAGACCCGCTGCTCAATCGCCATGACGGTCCCCGAAACGCGCCCCAACTTTTCTTCCCCTCCGGAAAGCACCCTGTCGAAGGGCGGTTCTTGGTACGGTGTACCGCCAACCCAGGTTCCTTGTGCCCCGTAGCCGGTCGTGCTGGAATAAAGTCGGACCGGGCTAGTTTTTAATAGGACTATAGCAAATGTGCTGCGCACCTGCAGTTTTACTGCGGATTATTGCAGAGACAAGTGGAAGTTATACTGCCCCCGGGACAAGGATGCAGGGCCCAGGACATACTAGTGCATAACGAGGAGAGATGATGGGCAAGGGCCCCGTGGTGGAGCCAGGGTAGAGCCAGTGCAGGGGAGGAAGCGACTACACCAGGACACCAGCTGAGCTCTCAGCCCTCTCAGGTCAGGCCATCACCACTTCACCAGGGAGGCACCTTCTTTGTTCTGTCTGCCTGATGACTCTCACGCATCCCTCCGTTTTGTGAGCACGCACACATATATGCAGTAGCGGCGCAGCGGAGGACAGGCATTGGAAATTTTGTTGATGGCCCCATCCCATGCTGTGCCTCATCCCTGTCTCCGACCATACCCATGTTCTATCTCTCGCTCTTATTACATGTGCGTGTGTGTATACCAAACCTGGGCACCTGGTGTGGCCGTGTC | |||||||||