| mature miRNA: TGCACTGCCTCTTCCCTGGCT species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|37753471|gb|CF769776.1|CF769776 DSBF1_3_F11.g1_A010 Drought-stressed before flowering Sorghum bicolor cDNA clone DSBF1_3_F11_ TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): CCAATGGGGTTCAAAACTCTGAAGCAAATTCCAATGATGTTCAAAACTCTGAAGCCCAGGAAGAGGCATTGCACGGGAAATATATCCCTGCTCCTCATAAGGCAATACACCCCATAACATAAAGCTGAACTGGCAATATCAAATCTCATTATGTGCTATACTATGTTGATCTGTAAATGGTGCAGCTATGGTATGGAAAGTACAAGCAGGCGACTACCACCTGCTAAAACTAGGTGTTCCTCTGCAGGAAATATAGTATGCCTGTATTTAAGCAAAAGTCATCAAACTGTGTATGACTGCTGGATGGTGTCAATGTCCAGGCCCTTGAGCTTCACAACCGACTCCACATGCCCCTTCAGCGTGTGAAGCTCCCGCAGCCTTGCAATCTCAGCCCTCCGTTTCGCCTCCTCAGCCATTTGATTCAGCTCATGCACCCTCTCAGGGAACAGCTTGGCATCCGGTGGCTGCAGCCCGTGGAGCGTCCTCTGCGCATGTGCCCACTTGAGCGCCCTCTCTTCCTTACCAAAATTCTTCTTCCTTGTAA | |||||||||
gi|30942658|gb|CD209002.1|CD209002 HS1_45_G09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_45_G09_A012 5', mRNA TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): CTACTGGTCGGCATTCCCCCGCCGGCCGCCGCCAACCCCAACCCACCGCCGCGCGCGCTGTCTCCCTCTCTCGTGGAGACGACTGTGCGACAGCCGCTGCCGACAAACGCCAGGTGCCCAGGTCTTCTTCAGGCCCTTCGCCGGCGACGAGCACCGCCAGGTTTGGGTCGAGCGGGGGCCGATGGGGGAAGAGGCGGAGAGCACCTGCAAGCGCAAGGCGCCGGACTCGAGCGCGGAGGAGCAGCCGAGTTCCGCGCCTGCGCAGTCGCAGTCGCAGGCGGACCCGGCGGCCAAGCGCCGGAACCTCTCCCGCTCGTGCGTCCACGAGGTCGCCGTCCCGAAAGGGTACGAGTCGGCCAAGGACGAGGCGGTGCACGGGACGCTCGCCAACCCGGACTTCAATGGGGAGATGGCCAAGCAGTACCCGTTCAATCTCGACCCCTTCCAGAGCACCTCCATCGCGTGCCTGGAGCGGAACGAGTCCGTGCTTGTTTCTGCGCACACTTCTGCGGGGAAGACCGTTGTTGCTGAATACGCCATTGCAATGGCGTTCAGGGACAAGCAGAGGGTCATCTACACCTCCCCGCTCAAGGCCCTGAGCAACCAGAAGTACAGGGAGCTC | |||||||||
gi|9299525|gb|BE357968.1|BE357968 DG1_23_H09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): TGCCGGCCGGTCGTTGTCGTCGTCTGAGCATCCAGCTGGTGAGGTGAGGTGAGGTGAGGTGAGTAGACAGCAATGGCGGCGCAGCAGCAGCAGGGAAGAGGCAGTGGAGCTGCGGTGGTCGTTGCGGCGGCGGTGCTCCTCTGCGTGCTCCTCCAAGCCCACGTCGCGGAGTCGGCCGTGTTCACCGTCGGCGACCGTGGCGGCTGGAGCTTCAACACCAACACCTGGACCAACGGCAAGCGCTTCAAGGCTGGGGACGTCCTAGTGTTCAAGTACGACTCGACGGCGCACAACGTGGTGGCGGTGAACGCCGCCGGCTACAAAGGCTGCTCCGCGCCCCGCGGCGCCAAGGTGTACAAGTCCGGCAACGACCGCGTCACGCTCGCCCGCGGCACCAACTACTTCATCTGCAGCATCCCCGGCCACTGCCAGTCCGGCATGAAGATCGCCGTCACCGCCGCCTGACTGATCGACGACACCGCCGCCGCGTGATATACATATATATACATCTATCTATCGACTAGCTGATTGTCAGTTCGAGTGACTCATATGGACTTTTGTTATTACCATCGTTGTTTNCATGGA | |||||||||
gi|6673184|gb|AW283340.1|AW283340 LG1_223_A08.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): GGCGGAGGTGAGCTCCGCGGACTTCAACGCGTGCTCGGCCAGCAACGCCATCCAGTCCTACAGCGACCAGAACACCAAGATCGCGCTCACGGCGCCCGGCACGCGCTACTTCATCTGCGGCACGGCGGGCCACTGCGGCAACGGCATGAAGCTCGCCGTCACGGTCCCCGCTGCGGCCGCCACCACCCCGCCGGCGTCGTCATCCCCGCCCACCACGCCGGCGGCGCCCGGCGCCGACACGCCTCCGGAGACGACCACGCCGTCCACGTCCACGCCCACCGCGACGTCGCCGCCCACCGCGACCAAGCCCACATCGAGCAGCGCTGCCGCTGCCTGCGGTGGGGAGGCCCGGCTCGCTATGGGCATGTTGGCCGGCGCCGCGGGCCTCGCTGGGCTCGCCCTGATGGGCTAGGCAAGAGGCAGTGCTGTTTCCATGCTTTTCCCGTTGGTTGTTGGAGGCTTGTGGGCTTCTGGCCCATTGTGTTTATTTACTATTTATTACGCACTCTGAATTTCACGTTT | |||||||||
gi|57808304|gb|CX609584.1|CX609584 ANR1_13_C06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_13_C06_A002 5', mRNA sequ TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): GTGCTTATCCTGTTGGTATTCTTCTATACCTCCCTTGCTCTCGTCCCTCCCATTGTACCTGCAGTGCAGCCCATCATACTTTAGATCATCATGGCCAACGCCTTGCTGCTCCTCGTGGCGCTGCTCGTCGCCGGGTGCGCGGCTCTGGCTTCGGCCACGTCGTACACCGTCGGCGACGGGCAGGGCTGGACGACCAACGTCGACTACAGCACCTGGGCCTGCGGCAAGAGCTTCGCCGTCGGAGACAAACTAGTGTTCAACTACATGAGCAAGGCGCACTCGGTGACGGAGGTGAGCAAGAGCGGATACGACACCTGCTCCGGCGCCAACCCGCTGAGCGACGACGAGAGCGGCTCCACCGTCGTCCCGCTCCAGACCCCGGGAACGCACTACTTCATCTGCAACGTCCCCGGCCACTGCGCGGAAGGCATGAAGCTGGCCGTCGGCGTCTCCGCCACGCCGTCTTCCGCGGGGGGCGCCCTGCTGCAGGTCCCGGCGATGGCCTCCGTCGTCGCCGCGGCGGCCGCAGGCGCTGCGATCAAGCTCGCGCTCTTCTGACGGAGCACGGCGGCGCGGCTATGGATCGTCAGAGTCGTCTCAGGGAAGAGACAGTGCATGCAGATGGCTATGTTCTTGGACGTTGATGGTTCGTGTAATCGGAGATTACTGTCC | |||||||||
gi|33107769|gb|CF071110.1|CF071110 FE1_15_G11.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_15_G11_A002 5', mR TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): TACTGGATCGCCAACTCGGAAACCTTCAGAGGAAAGCCACTGCTAGCAAATCCCCCCGCGGTTCCATCGAGAGCCAACGCCGCCGCGGCAACATTTCGTTCTCGCCATGGCGTCGCTGTCGTCGACCTGGCTGCTCCTTCTCCTCTCCTGCCTCGCGCTTGCGCTGCTCGCGGCGGACGCCGAAGTGCACCACCATGAGTTCGTTGTCCAAGAGACGCCGGTGAAGAGGCTGTGCAAGACACACAACATCATCACGGTGAACGGACAGTTTCCGGGGCCGATGCTGGAGGTCAGGGAGGGCGACACGCTCGTGATCAACGTCGTCAACCGGGCGCAGTACAATGTCACCATCCACTGGCACGGCATCCGGCAGATGAGGACTGGGTGGGCGGACGGGCCTGAGTTCGTGACGCAGTGCCCCATCAAGCCCGGCGGCAGCTACAAGTACCGGTTCACCATCGAGGGGCAGGAGGGCACGCTGTGGTGGCACGCGCACAGCTCCTGGCTCAGGGCCACCGTCTACGGCGGGCTCATCATCCGCCCCAGGGAGAACAAGACCTACCCTTTCGCCAAGCCCTCCCGCGAAGTCCCCCTCATCCTCGGGGAAGTGGTGGGATGCGAACCCGATCGATGTCATCCGGGAGGCTCAGAAGACGGGCGGCGGTCCCAACGTCTCCGACGCCTTCACCATCAACGGCCAGCCCGG | |||||||||
gi|30973069|gb|CD229635.1|CD229635 CCC1_17_F09.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_17_F09_A00 TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): CTACTGGATGGAGGTGATGGCATTAGCATTAAGTGGTAGTTTGGCAATGGCAGCGGCCACAAGGTTTCCAGGTTTGGTATAAACACAAACACAGATAAAGATGGTGGGTTTGATTGGAGACAGGGGCGAGGCAGAGCATGGGATGGGGCCATCAACAACAAAATTTCCAATTTCCGTTTGCTTGCCCACAAAATGGAGGGACTTGTCAGGAGAGGTATCAGGCAGAGAGAAGGTGCCTCCCTGGTGAAACGGTGATGGCCTGAGAGAGCTCAGCTGGTGTCCTGGTGTTGTTGCTTCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCACCGTCGCCCTTGCCCATCATCATCATCTCTGTCTCTCTCTCGTTATGCTTTTGTGTGTTCTTGCCTGCATTCTTTTCTCAGTAGCAATATTACTTTCAGTTGTCTTTGCAATAGTTCTAACAAACACTGCAATGCAGGTCTGCAGCAGATTCCCATAGTTCTAACAAAAACTAAGCACTGTACACCATTTATTCCACCATGACGGGTTACCGTGGCAAATTATCCCTTGTTTTCTGCTAATCATACTTAA | |||||||||
gi|57821097|gb|CX622310.1|CX622310 GABR1_63_E08.b2_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_6 TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): TAATTGCCAATAAGACGAAAATACTACATTCTCTACCCTTTGTTAATGCAATAGCAGAGAAAACAGATTTTTTTTTTTGCTGTTCTGGTTGGTGCCTGAAATCGAGGAAGGGGAAGTAGCGGCGCATTGAGTGGTGGTGTTGCCATACTGTGTAAATTTTTGTCAACATTGTTTAACAAAATATATCCCTCCTCACATGTCATTTTGTCGACCTTGTGGCGGCGGACGGAGCGGCAGGCGGGAGCGAAGCGCGGCACGGACACCCATGCGCACTGCTCCGGCCTGCAGCTGGACGCTGGACGCTCGCGGGCGTCTGGAGCCCGGAGGCGCCCCAGATGCCTGAGAGCAGGACGATGCAAAGGGCAGCCCGACTGAAACGATCCCGAGCGAGACGGCGGCCGTACAGAGGTGACCGACCGGACTTCGGCGCAGGCACAGCACAGCGCAGCCGGACCAGAAGTTGCCGGCCCTTTGATGGCCGGACCAGAAGATGCTGACACCTCCAAATTCCAATGGTGTTCAAAACTCTGAAGCAAATTCCAATGATGTTCAGAACTCTGAAGCCCAGGAAGAGGCATTGCACGGGAGATATATCCCTGCTCCTCATAAGGCAATACACCCCATAACATAGAGCTGAACTGGCAATATCAGATCTCATTATGTGCT | |||||||||
gi|57821550|gb|CX622763.1|CX622763 GABR1_65_G11.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_6 TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): AGCAAGGGGAACAGCTGCTCTCTCTAGCTACATATACATATATATAACAACACGTACTACTGCGCGTTGCAACACCCATGGCGGCGGCTCGGGGAAGAGGCAGTGCCGCAGGCGGCAGTAGGGCGCCGCCGCTTGTCGCCGGTGCCGCGTTCCTGTGCGTGGCGGTGCTCCTGCTGGCGGTGGCCACCCCGGCGGCCGAGGCGGGGACGACGTACCTCGTCGGCGACGCCGCCGGGTGGACGCTCCGGCCCAAAGTTGACTACGGCCAGTGGGTGGCCGGCAAGACCTTCCACGCCGGCGACATCCTCGTGTTCAAGTACAACACCACGTATCACGACGTGGCGTGGGTGAGCAAGGGAGGCTACAGGAACTGCATCGTGTCGCCCAAGGGCGGACGCGCGCCGGTGTACCACACGGGCCACGACGCCGTCACGCTGCCCAGGGGCACGCACTACTTCATCTGCGGCACGCCGGGACACTGCAGCGCCGGCATGAAGCTCGCCGTCACGGTCTACTGATCAGATCCATAGTACGTCGTACTACGTACGTCTCCGGCCAGCAGCTTCATATCTTCTCGATCGCGTGTGGGTAG | |||||||||
gi|30967674|gb|CD224240.1|CD224240 CCC1_32_G04.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_32_G04_A00 TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): ATGGAGGTGATGGCATTAGCATTAAGTGGTAGTTTGGCAATGGCAGCGGCCACAAGGTTTCCAGGTTTGGTATAAACACAAACACAGATAAAGATGGTGGGTTTGATTGGAGACAGGGACGAGGCAGAGCATGGGATGGGGCCATCAACAACAAAATTTCCAATTTCCGTTTGCTTGCCCACAAAATGGAGGGACTTGTCAGGAGAGGTATCAGGCAGAGAGAAGGTGCCTCCCTGGTGAAACGGTGATGGCCTGAGAGAGCTCAGCTGGTGTCCTGGTGTTGTTGCTTCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCACCGTCGCCCTTGCCCATCATCATCATCTCTGTCTCTCTCTCGTTATGCTTTTGTGTGTTTTTGCCTGCATTCTTTTCTCAGTAGCAATATTACTTTCAGTTGTCTTTGCAATAGTTCTAACAAACACTGCAGTGCAGGTCTGCAGC | |||||||||
gi|45951028|gb|CN126101.1|CN126101 RHOH1_15_D10.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_15_D10 TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): CTTCAGAACCAGACCAGGCGTACTCAGACATGCCATGCCTTGGCGTTTCGCAAAAAAAGATGGTTCCCAATCAGATTTTCTTAGCGCTACCCTGTGAATTGATCTATGGCTAGCATCACACCGTCCACTTCTGTTTCTGGGATACTATTCACAATTTGAGCCACGAAACAAAGACCAAACCGGGTCCAGTTCGTACATTGGAGAATGTGTGCCAGGAAACCCAAACTCTGTTCAACCAACTCACATCCCCCTCTTCTCAGTAAAGCATATGAACCAGCCCAGTGTGGTGGGATTCGCGTGAAATGAACCTCGGTCGATGCTAATTCGGTGGTGGTCCAGATCCCCCGACCAAGCGCCTCCTGAGCCGACCCCGTGTCAACCGAATCGCCTCCTCGATGAGCGTCTCCTCCGGTGGTAGTGGTGGCGGTGCACCCCTCAATGACACCCGGGGTGGGTCAACCTGCATGGCTTCAGTGTCCTGAGGACCGTTGGTAGCAGCGGCTTCAGGAGCAAGTGGTGGTGGTGGTGGCTGGGCAAGAGGCACTGCACCACGAGGGGCCACTGGAATTGGGGGCGGCATTGGAGTGGGAGGAACTTTATCTTGGGCAGGCTGTGGTGGCAT | |||||||||
gi|18069991|gb|BM330854.1|BM330854 PIC1_57_D10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): AGGTCCTCCAAAGAAAGGACACCACATGGGTGACTTCATTCCTCCAGAAGAACTTGAAAAGTTCATGGCACGCTGTAATGATGCTGCAGCACAAAAGGCTACCAAAGAAGCCGCCGAGAAGGCTAAGATTCAGGCAGACAATATTGGTCATAAACTTCTATCTAAGATGGGTTGGAGGGAAGGTGAGGGTCTTGGTAGCGAGAGAAGAGGCCGTGCAGATCCCATTATGGCTGGAGATGTGAAGAAGGATCATCTTGGTGTTGGCGCAGTCCAGCCTGGTGAGGTCACATCTGAAGATGACATCTATGAGCAATACAAGAAGCGAATGATGCTTGGATACCGCTATAGGCCAAACCCTCTGAACAATCCAAGGAAATCATACTACTGAGTACTGATACAGGAGAGTTCATCCGAGGGGAGATCAGAGAAGTCAAGAAGTTCGTTATTCAGCATATTTCTTGGAATGCCACAGATGTGAGGCTTCTGGGTTCTACGAAGCTTTGTTCTTTGTGTAGTGTTGATCTTTGTGGCTTTAAATGTTGTGTTGAAACGAGTATCATGTTTCAAACCAGTGATATATTGCCTTCTTGGATCCAGTATATTTTTTCTG | |||||||||