| mature miRNA: TGCAGTTGCTGCCTCAAGCTT species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270412192|gb|GT795241.1|GT795241 CCXG7367.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG73 TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): TCGATATGGAAAGACCAAGACGAGCAGCAGTCGTCGCAAATCCCAACTCGGAGCTTAAGTTTTGGCAAAGGGAGGCAGCAAGCTTGAGACAACAACTGCACAACTTGCAAGAAAATCATCGGCAGTTGATGGGAGAAGATCTATCAGGGCTGAACGTTAAGGAACTGCAGTCCATAGAGAATCAGCTGGAAATAAGCATACGTGGCGTCCGCACAAAGAAGGACCAGCTCTTGTTCGATGAAATTCACGAACTGAATCGGAAGGGAAGTATGGTTCACCAAGAAAACATGGAATTATACAAAAAGATAAGTCTGATTGGCCAAGAAAATGCTGAATTATATAAGAAGATCTACGAGGCAGAAGGACCAAGTGAAGTCAACCAGGATTCACCAACACCATACAACTTTGCAGTGGTTGAGAACAGGAATGTTCCTGTGCAACTTGAACTCAGCACACTGCCACAACAGAATGATAATGAGCAGTCAACTGCTCCTAAGCTAGGATTACAGTTAAATCCATGAACTGAAGTGATAACGTTGAGGTCTGTTGCTGAAGGATACTATTTGATGTAAAGAGTTGATATTCAGAGCAAGAGTTTACACAACGAGTTATTTAAGGAATGGACATGTAAATGTACTGCAAATAAGTGCCACCATGGAATTGAATTGTGGAATCCAGAAAATGATTGTTTCCTAAAGCATAATTATTTATTTGTACAAATCCACCTGGCATGGAAAAATAGATGAGATGTGTGTACTCCAC | |||||||||
gi|270455964|gb|GT838490.1|GT838490 CCYP1272.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): ATCAGACATCCAGCGCAATCGAAGATTTGAATTCCAGCTATGGTTCTGCGACCATCTCTTGCAACCTCCTCGCTGTCACGAGGCATGGTGATGGTGTGATCGACATGTGTCCCGCCGATTTGCTTCCATGACCATCTGCTGCGTCGCCTCGCATGGCTCCACGCGTCGACCACCCGTGCTCCCACAGACCCCCGTCGATCTCGTGTTGGTTTCGCCTTCCCGATTTCCTTCCTCCCTAAAGCCCCGATCCCCCCAAGTTATCGCAAGCCGCAGTGGCTGGCTTCGGAGTCCACATCTCTCCACCGGCGGCCGCGCGCCGTGGCCTCAGATTGATGCAAGGGGTGGTGACAAACTTGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGGTTTCAGAGCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTGTCAGTGCAACAGCAGAATTATGCAATCTGAAGGCAAAAAGTAATGAAAATGTACCACTAGCAAACATGATTAGTTATTGGCATAGAGAATATTCCGATGCATGACATTTGCACAGTAGCTGCACAACTAAGCGAGAAATAACATTTCTGGAAAACGCAGGCAAGCATGTCCATTTTGAAATATGGATATCCTGTCTTGTTAAAGTCTTTAATTACCAATATGTACTTATTTAAAGTGCTCAGCTAGTAAA | |||||||||
gi|270475791|gb|GT857343.1|GT857343 CCYP12053.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): TAGCGATGGCCATAGTTATCAAAGATGACGTTCACTTTCGATCATCTTTTGCAAATAGAAGTGCTTTCAATGGTCTTTGGGCGATACCTTTCACTTTCGGGGTCGCAGTTTTCTGCTTTGAAGGGATTTAGTATGACTCTGGCCGCTGGAGGCATCAATGGCAGAACGAAGAAAGTTCCGCTGGGTGCTTTCTCAAGCAGTTGTCTGCATCATATTTGTGTATGCGTGTTTTGGAGTGTGTGGGTACTTGGCCTATGGTGAAGCCACCAAGGACATCATAACACTTAATCTTCCCAATACCTGGTCTTCTTCTGCAGTTAAGGTTGGCTTATGCTTCGCACTGGCATTCACATTCCCAGTTATGATGCACCCGATCCATGAGATTGTTGAGATGAGAATCAGATCAATCGGATGCTTCCATAAGCTTTCCCACAATGTCCATGGTGCCGAATGGTTGGGCTTGCACTCAAGCCGCATCGCTGTGGTGATCATCCTGGCAGTGGTGGCCTCCTTTGTGCCTGCATTTGGGTCTTTCATCTCCTTTGTTGGGAGCACGGTGAGTGCGCTGCTCGCTTTCGTGCTGCCTACCGCCTTCCATCTCCGCATAGTGGGGTCATCAATGAGCTTGTGGCAGCGGCTGCTTGACTATGGTTTCCTTCTCTTTGGCCTGGTTTTCGCTGGCTATGGAATGTTCACGGCTCTCTAGCCTGTCAAATTGATTGAGGAATTCAAGATTAAATGTCCACTATGTTGAAGTACAGAAGTCAAGTGTTCATAG | |||||||||
gi|270396035|gb|GT777106.1|GT777106 CCXF12207.b1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachy TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): AAGAAGAAGAGTAAATGAACTCCAGAGACCTCAGATAAGATTGATGCAGGAACTGCACCTACTGAGGTCGAGGGGAAATCTAATGGTGCCAGTGTGAATAGTGATGCTGTAGAAGAAGGGAAAGATGCCAATGAAAAGAAAAGTAAAAAGAAGAAAAAGAAGCTGAGTTCTGAATCAGATGACGAAAACAAGATTGGAATGGACATCGAGACAGGTGAAGATGGAAGGGTTTCAACTGATAATGGAGTTACTAAGAAGAGGAAACTTGAAGACAAAGAAGGTATCACTGGCACTGAGGATGATGTGAATGAGTGCAGCACCATATTGAAGCCAAATAAAAGGCAGAAACTTTCCGAGCCTAAAGCTTTGATTCCGTTTCAACGTGTGAAGCTGGATGATGTTAAATTTGCTGATGAAAGACTACAGGATAATTCATATTGGGCTAAGGGTGGTGCGGACTCTGGGTACGGTGCGAAGGCACAGGAGATTCTTGGCCAAGTCAGAGGAAGGGGCTTTAGACATGAGAAGACCAAGAAGAAGCGTGGAACCTACAAGGGGTGGGCTCATTGACCTCCAAACCCACTCGATTAAGTTCGACAATTCAGACGACGAGTGATTGCTTCACATCTGCAAGCCTCCCAAATTTTCCTGCCCTCAT | |||||||||
gi|270442586|gb|GT825892.1|GT825892 CCYO8753.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDN TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): TACACAAGTAAAATGGTTTAAAAGGGAAGAAAAAGAAGAAGAGTAAATCAACTCCAGAGACCTCAGATAAGATTGATGCAGGAACTGCACCTACTGAGGTCGAGGGGAAATCTAATGGTGCCAGTGTGAATAGTGATGCTGTAGAAGAAGGGAAAGATGCCAATGAAAAGAAAAGTAAAAAGAAGAAAAAGAAGCTGAGTTCTGAATCAGATGACGAAAACAAGATTGGAATGGACATCGAGACAGGTGAAGATGGAAGGGTTTCAACTGATAATGGAGTTACTAAGAAGAGGAAACTTGAAGACAAAGAAGGTATCACTGGCACTGAGGATGATGTGAATGAGTGCAGCACCATATTGAAGCCAAATAAAAGGCAGAAACTTTCCGAGCCTAAAGCTTTGATTCCGTTTCAACGTGTGAAGCTGGATGATGTTAAATTTGCTGATGAAAGACTACAGGATAATTCATATTGGGCTAAGGGTGGTGCGGACTCTGGGTACGGTGCGAAGGCACAGGAGATTCTTGGCCAAGTCAGAGGAAGGGGCTTTAGACATGAGAAGACCAAGAAGAAGCGTGGAACCTACAGGGGTGGGCTCATTGACCTCCAAACCCACTCGATTAAGTTCGACAATTCAGACGACGAGTGATTGCTTCACATCTGCAAGCCTCCCAAATTTTCCTGCCCTCATTACTTGGGTCAGTCTCGCTGAATGGAAGAAGTGAGGGGAATGCCCTCTTT | |||||||||
gi|78014945|gb|DV483333.1|DV483333 5384_C08_E16Z_060 Brachypodium distachyon leaf EST library Brachypodium distachyon cDNA clone TGCAGTTGCTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAAAAGAGATGGCGCCGGCCATGGCCTACCTGAACAGCAGCCTCTTCTTGCCATCATCCCCTCTCTCCTACTTCAGTGGTGCATCCCTCTCCATGTCTACCCATAATAGGAGGAGATCATGGCCGCCAAGGGGGGCAATAATGCTCGTGGCAGCAGCTGCATACTCTAAGAACATTCTTGTCATGGGGGGCACCATGTTCATTGGTGTCTTCATGTCCCCACTCCTTGTCAAGGAGGGACATCCCGTCACATTGTTCACTACAGGAAAGGCTCCCGTAACCCACCTGTTGCCAGGTGAATCAAATGCACAGTATGCAGAGTTCTCTTCCAAGGTGCTACTTTTGGAAGGTGACAGGCAAGACTTTGACTT | |||||||||